Contig 004144:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043A22Sequence423004144 (3)ref|XP_004136933.1|8e-59PREDICTED: magnesium transporter MRS2-3-like [Cucumis sativus] ref|XP_004159919.
JMFF047P15Sequence631000740 (3)ref|XP_004230684.1|5e-80PREDICTED: magnesium transporter MRS2-3 [Solanum lycopersicum]580004144 (3)ref|XP_004136933.1|2e-76PREDICTED: magnesium transporter MRS2-3-like [Cucumis sativus] ref|XP_004159919.
JMSF022L24Sequence643000740 (3)ref|XP_004230684.1|2e-79PREDICTED: magnesium transporter MRS2-3 [Solanum lycopersicum]808004144 (3)ref|XP_009603566.1|3e-112PREDICTED: magnesium transporter MRS2-3 isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022L24+ AATTAAAAGCCGCTTGGTTGC
                      ____________________________________________________________
consensus AATTAAAAGCCGCTTGGTTGC
 
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rJMSF022L24+ CATAACTGGGGCGTGTTCAGAAGGTAAGAGATGAACTGGAGCATCTACTAGATGATGATG
                      ____________________________________________________________
consensus CATAACTGGGGCGTGTTCAGAAGGTAAGAGATGAACTGGAGCATCTACTAGATGATGATG
 
. : . : . : . : . : . :
rJMSF022L24+ AAGATATGGCTGAGATGTATTTGACTGAAAAACTTATGCAACAACTTGAGGGTTCTTCTG
                      ____________________________________________________________
consensus AAGATATGGCTGAGATGTATTTGACTGAAAAACTTATGCAACAACTTGAGGGTTCTTCTG
 
. : . : . : . : . : . :
rJMSF022L24+ TTTCATCCATAAATGAGCAAGATGGCTTGGATGAAGGAGTTATTCAGGAAGATTTGATTG
                      ____________________________________________________________
consensus TTTCATCCATAAATGAGCAAGATGGCTTGGATGAAGGAGTTATTCAGGAAGATTTGATTG
 
. : . : . : . : . : . :
rJMSF022L24+ ATAGGATTCCTGCTGAGGTCTCAATGGGAGCAAATACTGGTTCCACCAGCTATGATGCTG
                      ____________________________________________________________
consensus ATAGGATTCCTGCTGAGGTCTCAATGGGAGCAAATACTGGTTCCACCAGCTATGATGCTG
 
. : . : . : . : . : . :
rJMSF022L24+ ATCTTCCTCATATTGATCACCAGCCTGAAAGATTAAATACACTTGGCCGAGGTAGTCAAG
                      ____________________________________________________________
consensus ATCTTCCTCATATTGATCACCAGCCTGAAAGATTAAATACACTTGGCCGAGGTAGTCAAG
 
. : . : . : . : . : . :
rJMSF022L24+ GAACACGGACAAGTACAACACATAGTGCTATTAGCAAGCATCTTGATGTGGAGGAGCTTG
                      ____________________________________________________________
consensus GAACACGGACAAGTACAACACATAGTGCTATTAGCAAGCATCTTGATGTGGAGGAGCTTG
 
. : . : . : . : . : . :
rJMSF022L24+ AAATGCTCTTAGAAGCATACTTTGTTCAGATCGATGGCACATTGAATAAACTCTCCACTC
rJMFF043A22+ C
rJMFF047P15+ C
                      ____________________________________________________________
consensus AAATGCTCTTAGAAGCATACTTTGTTCAGATCGATGGCACATTGAATAAACTCTCCACTC
 
. : . : . : . : . : . :
rJMSF022L24+ TCCGGGAGTATGTGGATGACACAGAAGATTACATCAACATTATGCTTGACGATAAACAGA
rJMFF043A22+ TCCGGGAGTATGTGGATGACACAGAAGATTACATCAACATTATGCTTGACGATAAACAGA
rJMFF047P15+ TCCGGGAGTATGTGGATGACACAGAAGATTACATCAACATTATGCTTGACGATAAACAGA
                      ____________________________________________________________
consensus TCCGGGAGTATGTGGATGACACAGAAGATTACATCAACATTATGCTTGACGATAAACAGA
 
. : . : . : . : . : . :
rJMSF022L24+ ACCATCTTCTGCAAATGGGAGTCATGTTGACAGCAGCAACTCTAGTCATAAGTGCATTTG
rJMFF043A22+ ACCATTTTCTGCAAATGGGAGTCATGTTGACAGCAGCAACTTTAGTCATAAGTGCATTTG
rJMFF047P15+ ACCATCTTCTGCAAATGGGAGTCATGTTGACAGCAGCAACTCTAGTCATAAGTGCATTTG
                      ____________________________________________________________
consensus ACCATCTTCTGCAAATGGGAGTCATGTTGACAGCAGCAACTCTAGTCATAAGTGCATTTG
 
. : . : . : . : . : . :
rJMSF022L24+ TGGTTGTGGCAGGAGTTTTTGGCATGAATATTGAAATTGAGCTGTTTAATGCTGAAAAAG
rJMFF043A22+ TGGTTGTGGCAGGAGTTTTTGGCATGAATATTGAAATTGAGCTGTTTAATGCTGAAAAAG
rJMFF047P15+ TGGTTGTGGCAGGAGTTTTTGGCATGAATATTGAAATTGAGCTGTTTAATGCTGAAAAAG
                      ____________________________________________________________
consensus TGGTTGTGGCAGGAGTTTTTGGCATGAATATTGAAATTGAGCTGTTTAATGCTGAAAAAG
 
. : . : . : . : . : . :
rJMSF022L24+ CTGGGATGCCAGAGTTCTTGTGGACCATTGGTGGTGGTTGCACTGGTAGTATTTTCCTGT
rJMFF043A22+ CTGGGATGCCAGAGTTCTTGTGGACCATTGGTGGTGGTTGCACTGGTAGTATTTTCCTGT
rJMFF047P15+ CTGGGATGCCAGAGTTCTTGTGGACCATTGGTGGTGGTTGCACTGGTAGTATTTTCCTGT
                      ____________________________________________________________
consensus CTGGGATGCCAGAGTTCTTGTGGACCATTGGTGGTGGTTGCACTGGTAGTATTTTCCTGT
 
. : . : . : . : . : . :
rJMSF022L24+ ATGTGATTGCAATTGCCTGGTGTAAGCACAAACGTTTACTTGAGTAAAAGGAGAGATCAA
rJMFF043A22+ ATGTGATTGCAATTGCCTGGTGTAAGCACAAACGTTTACTTGAGTAAAAGGAGAGATCAA
rJMFF047P15+ ATGTGATTGCAATTGCCTGGTGTAAGCACAAACGTTTACTTGAGTAAAAGGAGAGATCAA
                      ____________________________________________________________
consensus ATGTGATTGCAATTGCCTGGTGTAAGCACAAACGTTTACTTGAGTAAAAGGAGAGATCAA
 
. : . : . : . : . : . :
rJMSF022L24+ TCCTCAATATGGCGACAACATGTATGTATATGGATCCTAAACTGAAGGATCCCAAGTTGA
rJMFF043A22+ TCCTCAATATGGCGACAACATGTATGTATATGGATCCTAAACTGAAGGATCCCAAGTTGA
rJMFF047P15+ TCCTCAATATGGCGACAACATGTATGTATATGGATCCTAAACTGAAGGATCCCAAGTTGA
                      ____________________________________________________________
consensus TCCTCAATATGGCGACAACATGTATGTATATGGATCCTAAACTGAAGGATCCCAAGTTGA
 
. : . : . : . : . : . :
rJMSF022L24+ ACTT
rJMFF043A22+ ACTTTGTATTGATGCTTGAAATATATGATTGTGGTATGAAACT
rJMFF047P15+ ACTTTGTATTGATGCTTGAAATATATGATTGTGGTATGAAACTATGAACAGCCTTTTGCC
                      ____________________________________________________________
consensus ACTTTGTATTGATGCTTGAAATATATGATTGTGGTATGAAACTATGAACAGCCTTTTGCC