| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF047E04 | Sequence | 414 | 013256 (3) | ref|XP_008655101.1| | 1e-19 | PREDICTED: CTP synthase isoform X1 [Zea mays] | 383 | 004135 (5) | |||
| JMFS169E06 | Sequence | 269 | 004135 (5) | ||||||||
| JMSF009G22 | Sequence | 288 | 013256 (3) | 787 | 004135 (5) | ref|XP_009592741.1| | 3e-56 | PREDICTED: CTP synthase-like isoform X3 [Nicotiana tomentosiformis] | |||
| JMSF028E05 | Sequence | 627 | 013256 (3) | ref|XP_008386738.1| | 3e-52 | PREDICTED: CTP synthase-like [Malus domestica] | 732 | 004135 (5) | ref|XP_009592741.1| | 5e-49 | PREDICTED: CTP synthase-like isoform X3 [Nicotiana tomentosiformis] |
| JMSF046B12 | Sequence | 652 | 016881 | ref|XP_004229408.1| | 3e-139 | PREDICTED: CTP synthase [Solanum lycopersicum] ref|XP_010322495.1| PREDICTED: CT | 610 | 004135 (5) | ref|XP_009592739.1| | 3e-07 | PREDICTED: CTP synthase-like isoform X1 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF009G22+ ATCAAAGACACATA
____________________________________________________________
consensus ATCAAAGACACATA
. : . : . : . : . : . :
rJMSF009G22+ TGGGCAGCACCATGAGGCTGGTTCTCGGAAGACATTGTTCCGGTCTCCTGATTGCATCAC
rJMSF028E05+ TGATTGCATCAC
____________________________________________________________
consensus TGGGCAGCACCATGAGGCTGGTTCTCGGAAGACATTGTTCCGGTCTCCTGATTGCATCAC
. : . : . : . : . : . :
rJMSF009G22+ TGCAAAGCTGTACAAGAATTCACAGTATGTGGATGAGAGGCATCGGCATAGATATGAGGT
rJMSF028E05+ TGCAAAGCTGTACAAGAATTCACAGTATGTGGATGAGAGGCATCGGCATAGATATGAGGT
____________________________________________________________
consensus TGCAAAGCTGTACAAGAATTCACAGTATGTGGATGAGAGGCATCGGCATAGATATGAGGT
. : . : . : . : . : . :
rJMSF009G22+ TAATCCTGAGATGGTTGGTGCTTTAGAACAAGCTGGCTTGAAATTTGTTGGAACGGATGA
rJMSF028E05+ TAATCCTGAGATGGTTGGTGCTTTAGAACAAGCTGGCNTGAAATTTGTNGGAACGGATGA
____________________________________________________________
consensus TAATCCTGAGATGGTTGGTGCTTTAGAACAAGCTGGCTTGAAATTTGTTGGAACGGATGA
. : . : . : . : . : . :
rJMSF009G22+ AAGTGGAAAGCGAATGGAGATTTTGGAACTTCCAAATCACCCATTTTATGTATGTGTCCA
rJMSF028E05+ AAGTGGAAAGCGAATGGAGATTTTGGAACTTCCAAATCACCCATTTTATGTATGTGTCCA
rJMSF046B12+ CCATTTTATGTATGTGTCCA
____________________________________________________________
consensus AAGTGGAAAGCGAATGGAGATTTTGGAACTTCCAAATCACCCATTTTATGTATGTGTCCA
. : . : . : . : . : . :
rJMSF009G22+ GTTTCATCCAGAATTCAAGTCACGGCCTGGGAGGCCCTCAGCTCCA-TTTTTGGGTTTTA
rJMSF028E05+ GTTTCATCCAGAATTCAAGTCACGGCCTGGGAGGCCCTCAGCTCCA-TTTTTGGGTTTTA
rJMSF046B12+ GTTTCATCCAGAATTCAAGTCACGGCCTGGGAGGCCCTCAGCTCCATTTTTTGGGTTTTA
____________________________________________________________
consensus GTTTCATCCAGAATTCAAGTCACGGCCTGGGAGGCCCTCAGCTCCA-TTTTTGGGTTTTA
. : . : . : . : . : . :
rJMSF009G22+ TCTTGGCTGCGATAGGGAAATTAGATGCACACTTCAAGAAGGGTCTTCAGAATGGAACGC
rJMSF028E05+ TCTTGGCTGCGATAGGGAAATTAGANGCACACTTCAAGAAGGGTCTTCAGAATGGAACGC
rJMSF046B12+ TCTTGGCTGCGATAGGGAAATTAGATGCACACTTCAAGAAGGGTCTTCAGAATGGAACGC
____________________________________________________________
consensus TCTTGGCTGCGATAGGGAAATTAGATGCACACTTCAAGAAGGGTCTTCAGAATGGAACGC
. : . : . : . : . : . :
rJMSF009G22+ TATAGCAACGTCATTATTCAGTACTAGGGAAATCCTGTTATGTGCGGTTTGATACACTCA
rJMSF028E05+ TATAGCAACGTCATTATTCAGTACTAGGGAAATCCTGTTATGTGCGGTTTGATACACTCA
rJMSF046B12+ TATAGCAACGTCATTATTCAGTACTAGGGAAATCCTGTTATGTGCGGTTTGATACACTCA
____________________________________________________________
consensus TATAGCAACGTCATTATTCAGTACTAGGGAAATCCTGTTATGTGCGGTTTGATACACTCA
. : . : . : . : . : . :
rJMSF009G22+ AGACAAATGTAAATTTTCTTTTAGGAGGCTTGTTGAAGAAAGGGAAAACGTGGAAATTTT
rJMSF028E05+ AGACAAANGTAAATTTTCTTTTAGGAGGCTTGTTGAAGAAAGGGAAAACGTGGAAATTTT
rJMSF046B12+ AGACAAATGTAAATTTTCTTTTAGGAGGCTTGTTGAAGAAAGGGAAAACGTGGAAATTTT
____________________________________________________________
consensus AGACAAATGTAAATTTTCTTTTAGGAGGCTTGTTGAAGAAAGGGAAAACGTGGAAATTTT
. : . : . : . : . : . :
rJMSF009G22+ GGCTCGCTGCTGTTAACAAAGATGCATACCGATACAAGCTGCTTCATGTTGGTTGGGCTT
rJMSF028E05+ GGCTCGCTGCTGTTAACAAAGATGCATACCGATACAAGCTGCTTCATGTTGGTTGGGCTT
JMFS169E06- GCTTCATGTTGGTTGGGCTT
rJMSF046B12+ GGCTCGCTGCTGTTAACAAAGATGCATACCGATACAAGCTGCTTCATGTTGGTTGGGCTT
rJMFF047E04+ AGCTGCTTCATGTTGGTTGGGCTT
____________________________________________________________
consensus GGCTCGCTGCTGTTAACAAAGATGCATACCGATACAAGCTGCTTCATGTTGGTTGGGCTT
. : . : . : . : . : . :
rJMSF009G22+ TCAGGGTGCTGCTTCTGATGGTTGTTTCTGGCGAAAGCAGAAAACATTATATATAATTAT
rJMSF028E05+ TCAGGGTGCTGCTTCTGATGGTTGTTTCTGGCGAAAGCAGAAAACATTATATATAATTAT
JMFS169E06- T-AGGGTGCTGCTTCTGATGGTTGTTTCTGGCGAAAGCAGAAAACATTATATATAATTAT
rJMSF046B12+ TCAGGGTGCTGCTTCTGATGGTTGTTTCTGGCGAAAGCAGAAAACATTATATATAATTAT
rJMFF047E04+ TCAGGGTGCTGCTTCTGATGGTTGTTTCTGGCGAAAGCAGAAAACATTATATATAATNAT
____________________________________________________________
consensus TCAGGGTGCTGCTTCTGATGGTTGTTTCTGGCGAAAGCAGAAAACATTATATATAATTAT
. : . : . : . : . : . :
rJMSF009G22+ ATATGTTTTGTATTACAGATTTAGAGTGTACGTTGCCCATTTGGTTTCCTTCAAAATTCA
rJMSF028E05+ ATATGTTTTGTATTACAGATTTAGAGTGTACGTTGCCCATNTGGTTTCCTTCAAAATTCA
JMFS169E06- ATATGTTTTGTATTACAGATTTAGAGTGTACGTTGCCCATTTGGTTTCCTTCAAAATTCA
rJMSF046B12+ ATATGTTTTGTATTACAGATTTAGAGTGTACGTTGCCCATTTGGTTTCCTTCAAAATTCA
rJMFF047E04+ ATATGTTTTGTATTACAGATTTAGAGTGTACGTTGCCCATTTGGTTTCCTTCAAAATTCA
____________________________________________________________
consensus ATATGTTTTGTATTACAGATTTAGAGTGTACGTTGCCCATTTGGTTTCCTTCAAAATTCA
. : . : . : . : . : . :
rJMSF009G22+ AATTCGTCTGTGTTTCAAGCGAGTGATATGTAGGATTGTTTGGCTGATATTAGAGATGGC
rJMSF028E05+ AATTCGTCTGTGTTTCAAGCGAGTGATATGTAGGATTGTTTGGCTGATATTAGAGATGGC
JMFS169E06- AATTCGTCTGTGTTTCAAGCGAGTGATATGTAGGATTGTTTGGCTGATATTAGACATGGC
rJMSF046B12+ AATTCGTCTGTGTTTCAAGCGAGTGATATGTAGGATTGTTTGGCTGATATTAGAGATGGC
rJMFF047E04+ AATTCGTCTGTGTTTCAAGCGAGTGATATGTAGGATTGTTTGGCTGATATTAGAGATGGC
____________________________________________________________
consensus AATTCGTCTGTGTTTCAAGCGAGTGATATGTAGGATTGTTTGGCTGATATTAGAGATGGC
. : . : . : . : . : . :
rJMSF009G22+ AAAGTTAGATAGAAAATTTTCATGATATGCAATTTTGAGTTGCTCTATAATATA
rJMSF028E05+ AAAGTTAGATAGAAAATTTTCATGATATGCAATTTTGAGTTGCTCTATAATATATGGAAG
JMFS169E06- AAAGTTAGATAGAAAATTTTCATGATATGCAATTTTGAGTTGCTCTATAATATATGGAAG
rJMSF046B12+ AAAGTTAGATAGAAAATTTTCATGATATGCAATTTTGAGTTGCTCTATAATATATGGAAG
rJMFF047E04+ AAAGTTAGATAGAAAATTTTCATGATATGCAATTTTGAGTTGCTCTATAATATATGGAAG
____________________________________________________________
consensus AAAGTTAGATAGAAAATTTTCATGATATGCAATTTTGAGTTGCTCTATAATATATGGAAG
. : . : . : . : . : . :
rJMSF028E05+ A
JMFS169E06- AC
rJMSF046B12+ ACCATGGCTTTAAATGTCGAATGGTCAACATTTTTT
rJMFF047E04+ A-CATGGCTTTAAATGTCGAATGGTCAACATTTTTTTCCCTTTTTCAAAAAAGAAATGAC
____________________________________________________________
consensus ACCATGGCTTTAAATGTCGAATGGTCAACATTTTTTTCCCTTTTTCAAAAAAGAAATGAC
. : . : . : . : . : . :
rJMFF047E04+ GAATTGTCAAGTGTCCXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus GAATTGTCAAGTGTCCNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG