| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF023E15 | Sequence | 658 | 004134 (5) | ref|XP_009620481.1| | 251 | PREDICTED: serine/threonine-protein kinase ATG1 [Nicotiana tomentosiformis] | |||||
| JMFF046O07 | Sequence | 513 | 006085 (4) | ref|XP_009796101.1| | 2e-64 | PREDICTED: serine/threonine-protein kinase ATG1 isoform X1 [Nicotiana sylvestri | 635 | 004134 (5) | ref|XP_009620481.1| | 208 | PREDICTED: serine/threonine-protein kinase ATG1 [Nicotiana tomentosiformis] |
| JMSF011M15 | Sequence | 217 | 006085 (4) | ref|XP_009796102.1| | 2e-11 | PREDICTED: serine/threonine-protein kinase ATG1 isoform X2 [Nicotiana sylvestri | 778 | 004134 (5) | ref|XP_009796101.1| | 1e-112 | PREDICTED: serine/threonine-protein kinase ATG1 isoform X1 [Nicotiana sylvestri |
| JMSF040N14 | Sequence | 681 | 006085 (4) | ref|XP_009796101.1| | 3e-114 | PREDICTED: serine/threonine-protein kinase ATG1 isoform X1 [Nicotiana sylvestri | 877 | 004134 (5) | ref|XP_009796102.1| | 5e-127 | PREDICTED: serine/threonine-protein kinase ATG1 isoform X2 [Nicotiana sylvestri |
| JMSF044P06 | Sequence | 204 | 023277 | 193 | 004134 (5) | ref|XP_006339009.1| | 4e-15 | PREDICTED: serine/threonine-protein kinase ATG1-like [Solanum tuberosum] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF040N14+ CATCACAAGGA
____________________________________________________________
consensus CATCACAAGGA
. : . : . : . : . : . :
rJMSF040N14+ TCAGTGGATATAGCTGACACCTTGGAGCAACCATCAACTGATTGCATGAGGAGGATTGAG
____________________________________________________________
consensus TCAGTGGATATAGCTGACACCTTGGAGCAACCATCAACTGATTGCATGAGGAGGATTGAG
. : . : . : . : . : . :
rJMSF011M15+ CAGAATTAGTAAATGAGAAGTCTGAGGCAGTC
rJMSF040N14+ TCATTGCAATGTTGTGCTTCTGCTATCACAGAATTAGTAAATGAGAAGTCTGAGGCAGTC
____________________________________________________________
consensus TCATTGCAATGTTGTGCTTCTGCTATCACAGAATTAGTAAATGAGAAGTCTGAGGCAGTC
. : . : . : . : . : . :
rJMSF011M15+ AAACATCTGGAAGCATTCTCAATTCAGCTTGTCATTCTTGCAATATGGAAGCAAGCTTTG
rJMSF040N14+ AAACATCTGGAAGCATTCTCAATTCAGCTTGTCATTCTTGCAATATGGAAGCAAGCTTTG
____________________________________________________________
consensus AAACATCTGGAAGCATTCTCAATTCAGCTTGTCATTCTTGCAATATGGAAGCAAGCTTTG
. : . : . : . : . : . :
rJMSF011M15+ CATATTTGTCATACTCAAGCAGCATCAGCAGTTGAAGGAAGTCCAACACAACATGCTACT
rJMSF040N14+ CATATTTGTCATACTCAAGCAGCATCAGCAGTTGAAGGAAGTCCAACACAACATGCTACT
____________________________________________________________
consensus CATATTTGTCATACTCAAGCAGCATCAGCAGTTGAAGGAAGTCCAACACAACATGCTACT
. : . : . : . : . : . :
rJMSF011M15+ ACACTGCGGGAAACTATGAAGAGGGGTCAAGGCGGTCTCAACGTACACAATCCTGTTGAT
rJMSF040N14+ ACACTGCGGGAAACTATGAAGAGGGGTCAAGGCGGTCTCAACGTACACAATCCTGTTGAT
____________________________________________________________
consensus ACACTGCGGGAAACTATGAAGAGGGGTCAAGGCGGTCTCAACGTACACAATCCTGTTGAT
. : . : . : . : . : . :
rJMSF011M15+ GCTTCTAACACTTTGGGGCCACAGGATGTCTGCTCTCATATTCAAAGGTCATTCCTCAGT
rJMSF040N14+ GCTTCTAACACTTTGGGGCCACAGGATGTCTGCTCTCATATTCAAAGGTCATTCCTCAGT
rJMFF023E15+ CTTCTAACACTTTGGGGCCACAGGATGTCTGCTCTCATATTCAAAGGTCATTCCTCAGT
____________________________________________________________
consensus GCTTCTAACACTTTGGGGCCACAGGATGTCTGCTCTCATATTCAAAGGTCATTCCTCAGT
. : . : . : . : . : . :
rJMSF011M15+ GAAGTTCAGAATGCTGAGGAACTTTCCAAATTTGTAGAGCCTGGAAATACTGAAGTGCCA
rJMSF040N14+ GAAGTTCAGAATGCTGAGGAACTTTCCAAATTTGTAGAGCCTGGAAATACTGAAGTGCCA
rJMFF023E15+ GAAGTTCAGAATGCTGAGGAACTTTCCAAATTTGTAGAGCCTGGAAATACTGAAGTGCCA
rJMFF046O07+ CCAAATTNGTAGAGCCTGGAAATACTGAAGTGCCA
____________________________________________________________
consensus GAAGTTCAGAATGCTGAGGAACTTTCCAAATTTGTAGAGCCTGGAAATACTGAAGTGCCA
. : . : . : . : . : . :
rJMSF011M15+ GATGCAATGGAGATTATATTCCAATCTGCCCTAGCAATGGGCAGGAAGGGGGCTGTTGAC
rJMSF044P06+ TGAC
rJMSF040N14+ GATGCAATGGAGATTATATTCCAATCTGCCCTAGCAATGGGCAGGAAGGGGGCTGTTGAC
rJMFF023E15+ GATGCAATGGAGATTATATTCCAATCTGCCCTAGCAATGGGCAGGAAGGGGGCTGTTGAC
rJMFF046O07+ GATGCAATGGAGATTATATTCCAATCTGCCCTAGCAATGGGCAGGAAGGGGGCTGTTGAC
____________________________________________________________
consensus GATGCAATGGAGATTATATTCCAATCTGCCCTAGCAATGGGCAGGAAGGGGGCTGTTGAC
. : . : . : . : . : . :
rJMSF011M15+ GAATACATGGGCCGGACAGAAAATGCAGTAGTATTTTATTCAAAAGCAGTGCAGTTATTA
rJMSF044P06+ GAATACATGGGCCGGNCAGAAAANGCAGTAGTATTTTATTCAAAAGCAGTGCAGTNATTA
rJMSF040N14+ GAATACATGGGCCGGACAGAAAATGCAGTAGTATTTTATTCAAAAGCAGTGCAGTTATTA
rJMFF023E15+ GAATACATGGGCCGGACAGAAAATGCAGTAGTATTTTATTCAAAAGCAGTGCAGTTATTA
rJMFF046O07+ GAATACATGGGCCGGACAGAAAATGCAGTAGTATTTTATTCAAAAGCAGTGCAGTTATTA
____________________________________________________________
consensus GAATACATGGGCCGGACAGAAAATGCAGTAGTATTTTATTCAAAAGCAGTGCAGTTATTA
. : . : . : . : . : . :
rJMSF011M15+ GCATTCCTTCAAGTGGAAGCACCGTCTCTCATTTTAAATCCCCCGTTCTATCTGACAAAC
rJMSF044P06+ GCATTCCTTCAAGTGGAAGCNCCGTCTCTCATNTTAAATCCCCCGTTNTATCTGACAAAC
rJMSF040N14+ GCATTCCTTCAAGTGGAAGCACCGTCTCTCATTTTAAATCCCCCGTTCTATCTGACAAAC
rJMFF023E15+ GCATTCCTTCAAGTGGAAGCACCGTCTCTCATTTTAAATCCCCCGTTCTATCTGACAAAC
rJMFF046O07+ GCATTCCTTCAAGTGGAAGCACCGTCTCTCATTTTAAATCCCCCGTTCTATCTGACAAAC
____________________________________________________________
consensus GCATTCCTTCAAGTGGAAGCACCGTCTCTCATTTTAAATCCCCCGTTCTATCTGACAAAC
. : . : . : . : . : . :
rJMSF011M15+ ACAGATCGGTATAGGCTTCAGAATTACATAGACGTTCTTAAAAACAGGAAAAGCATTTCG
rJMSF044P06+ ACAGATCGGTATA
rJMSF040N14+ ACAGATCGGTATAGGCTTCAGAATTACATAGACGTTCTTAAAAACAGGAAAAGCATTTCG
rJMFF023E15+ ACAGATCGGTATAGGCTTCAGAATTACATAGACGTTCTTAAAAACAGGAAAAGCATTTCG
rJMFF046O07+ ACAGATCGGTATAGGCTTCAGAATTACATAGACGTTCTTAAAAACAGGAAAAGCATTTCG
____________________________________________________________
consensus ACAGATCGGTATAGGCTTCAGAATTACATAGACGTTCTTAAAAACAGGAAAAGCATTTCG
. : . : . : . : . : . :
rJMSF011M15+ AGATCCCAAATGATGGCTCTGCTCAAGTGCGAGGACCAACATTGCTCCCCATAAAGACAA
rJMSF040N14+ AGATCCCAAATGATGGCTCTGCTCAAGTGCGAGGACCAACATTGCTCCCCATAAAGACAA
rJMFF023E15+ AGATCCCAAATGATGGCTCTGCTCAAGTGCGAGGACCAACATTGCTCCCCATAAAGACAA
rJMFF046O07+ AGATCCCAAATGATGGCTCTGCTCAAGTGCGAGGACCAACATTGCTCCCCATAAAGACAA
____________________________________________________________
consensus AGATCCCAAATGATGGCTCTGCTCAAGTGCGAGGACCAACATTGCTCCCCATAAAGACAA
. : . : . : . : . : . :
rJMSF011M15+ AGGTTTCAACTAATTCATACTAACTGGTGAAGTGGTGATAGCATGTCATGTTATAGTCTG
rJMSF040N14+ AGGTTTCAACTAATTCATACTAACTGGTGAAGTGGTGATAGCATGTCATGTTATAGTCTG
rJMFF023E15+ AGGTTTCAACTAATTCATACTAACTGGTGAAGTGGTGATAGCATGTCATGTTATAGTCTG
rJMFF046O07+ AGGTTTCAACTAATTCATACTAACTGGTGAAGTGGTGATAGCATGTCATGTTATAGTCTG
____________________________________________________________
consensus AGGTTTCAACTAATTCATACTAACTGGTGAAGTGGTGATAGCATGTCATGTTATAGTCTG
. : . : . : . : . : . :
rJMSF011M15+ CAAAATTATTTATTATGTACAGTTAATTCTTTTATGTTGTTCCTGCTCTTGAAGGAAATT
rJMSF040N14+ CAAAATTATTTATTATGTACAGTTAATTCTTTTATGTTGTTCCTGCTCTTGAAGGAAATT
rJMFF023E15+ CAAAATTATTTATTATGTACAGTTAATTCTTTTATGTTGTTCNTGCTCTTGAAGGAAATT
rJMFF046O07+ CAAAATTATTTATTATGTACAGTTAATTCTTTTATGTTGTTCCTGCTCTTGAAGGAAATT
____________________________________________________________
consensus CAAAATTATTTATTATGTACAGTTAATTCTTTTATGTTGTTCCTGCTCTTGAAGGAAATT
. : . : . : . : . : . :
rJMSF011M15+ GAAATCC
rJMSF040N14+ GAAATCC
rJMFF023E15+ GAAATCCACTGGACTGGAACAATATATACTTGATTAACATGTAGGNTGAAGCCTTCAGAA
rJMFF046O07+ GAAATCCACTGGACTGGAACAATATATACTTGATTAACATGTAGGCTGAAGCCTTCAGAA
____________________________________________________________
consensus GAAATCCACTGGACTGGAACAATATATACTTGATTAACATGTAGGCTGAAGCCTTCAGAA
. : . : . : . : . : . :
rJMFF023E15+ TTNTACCAGAATCAAGTTGTGGCCTGTGGCATTGCCTCTTGGTGAAGGTAC
rJMFF046O07+ TTCTACCAGAATCAAGTTGTGGCCTGTGGCATTGCCTCTTGGTGAAGGTACTTATAGGAT
____________________________________________________________
consensus TTCTACCAGAATCAAGTTGTGGCCTGTGGCATTGCCTCTTGGTGAAGGTACTTATAGGAT
. : . : . : . : . : . :
rJMFF046O07+ GCGTTTGGGTTATGTTACACTTCTAAATTTAACGAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus GCGTTTGGGTTATGTTACACTTCTAAATTTAACGAAAAAAAAAAAAAAACTCTCCAGGGT