Contig 004133:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006P07Sequence551004523 (2)gb|AAC50019.1|9e-63high mobility group protein 2 HMG2 [Ipomoea nil]397004133 (8)gb|AAC50019.1|3e-04high mobility group protein 2 HMG2 [Ipomoea nil]
JMFF013J08Sequence579004133 (8)gb|AAC50019.1|4e-63high mobility group protein 2 HMG2 [Ipomoea nil]631004133 (8)gb|AAC50019.1|9e-38high mobility group protein 2 HMG2 [Ipomoea nil]
JMFF016J21Sequence554004523 (2)gb|AAC50019.1|1e-62high mobility group protein 2 HMG2 [Ipomoea nil]677004133 (8)gb|AAC50019.1|6e-61high mobility group protein 2 HMG2 [Ipomoea nil]
JMFF046I16Sequence514004133 (8)gb|AAC50019.1|2e-63high mobility group protein 2 HMG2 [Ipomoea nil]536004133 (8)gb|AAC50019.1|9e-37high mobility group protein 2 HMG2 [Ipomoea nil]
JMSF039H12Sequence641004133 (8)gb|AAC50019.1|8e-63high mobility group protein 2 HMG2 [Ipomoea nil]717004133 (8)gb|AAC50019.1|2e-62high mobility group protein 2 HMG2 [Ipomoea nil]

Alignment

This contig is upended


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JMFF046I16-                                                                     CA
JMFF013J08-                                                                  ACACA
JMSF039H12-                                                                     CA
rJMSF039H12+                                                                    CA
                      ____________________________________________________________
consensus                                                                    ACACA
 
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JMFF046I16-           AGCCAAAGCATATCCATCCCTTCGTGTTATTGTCTTTCTCTCTCTCTCTCTCAACCCTAG
JMFF013J08-           AGCCAAAGCATATCCATCCCTTCGTGTTATTGTCTTTCTCTCTCTCTCTCTCAACCCTAG
JMSF039H12-           AGCCAAAGCATATCCATCCCTTCGTGTTATTGTCTTTCTCTCTCTCTCTCTCAACCCTAG
rJMSF039H12+          AGCCAAAGCATATCCATCCCTTCGTGTTATTGTCTTTCTCTCTCTCTCTCTCAACCCTAG
                      ____________________________________________________________
consensus             AGCCAAAGCATATCCATCCCTTCGTGTTATTGTCTTTCTCTCTCTCTCTCTCAACCCTAG
 
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JMFF046I16-           AGGTTTCGCCATGAAGGGAGGTAAATCCAAGGCCAAAGCTGATAACAAGCTTGCCGTGAA
JMFF013J08-           AGGTTTCGCCATGAAGGGAGGTAAATCCAAGGCCAAAGCTGATAACAAGCTTGCCGTGAA
JMSF039H12-           AGGTTTCGCCATGAAGGGAGGTAAATCCAAGGCCAAAGCTGATAACAAGCTTGCCGTGAA
rJMSF039H12+          AGGTTTCGCCATGAAGGGAGGTAAATCCAAGGCCAAAGCTGATAACAAGCTTGCCGTGAA
rJMFF013J08+                                                      ACAAGCTTGCCGTGAA
rJMFF016J21+                          GGAGGTAAATCCAAGGCCAAAGCTGATAACAAGCTTGCCGTGAA
                      ____________________________________________________________
consensus             AGGTTTCGCCATGAAGGGAGGTAAATCCAAGGCCAAAGCTGATAACAAGCTTGCCGTGAA
 
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JMFF046I16-           AAAGAGAGGCGGTGAGACTAAGAAAGCGAAGAAAGCTGTCAAGGATCCAAACAAGCCGAA
JMFF013J08-           AAAGAGAGGCGGTGAGACTAAGAAAGCGAAGAAAGCTGTCAAGGATCCAAACAAGCCGAA
JMSF039H12-           AAAGAGAGGCGGTGAGACTAAGAAAGCGAAGAAAGCTGTCAAGGATCCAAACAAGCCGAA
rJMSF039H12+          AAAGAGAGGCGGTGAGACTAAGAAAGCGAAGAAAGCTGTCAAGGATCCAAACAAGCCGAA
rJMFF013J08+          AAAGAGAGGCGGTGAGANTAAGAAAGCGAAGAAAGCTGTCAAGGATCCAAACAAGCCGAA
rJMFF016J21+          AAAGAGAGGCGGTGAGACTAAGAAAGCGAAGAAAGCTGTCAAGGATCCAAACAAGCCGAA
                      ____________________________________________________________
consensus             AAAGAGAGGCGGTGAGACTAAGAAAGCGAAGAAAGCTGTCAAGGATCCAAACAAGCCGAA
 
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JMFF046I16-           GAGGCCTCCTAGTGCTTTCTTCGTGTTCATGGAGGACTTCCGCAAGACGTACAAGGAAAA
JMFF013J08-           GAGGCCTCCGAGTGCTTTCTTCGTGTTCATGGAGGACTTCCGCAAGACGTACAAGGAAAA
JMSF039H12-           GAGGCCTCCGAGTGCTTTCTTCGTGTTCATGGAGGACTTCCGCAAGACGTACAAGGAAAA
rJMSF039H12+          GAGGCCTCCGAGTGCTTTCTTCGTGTTCATGGAGGACTTCCGCAAGACGTACAAGGAAAA
rJMFF013J08+          GAGGCCTCCGAGTGCTTTCTTCGTGTTCATGGAGGACTTCCGCAAGACGTACAAGGAAAA
rJMFF016J21+          GAGGCCTCCGAGTGCTTTCTTCGTGTTCATGGAGGACTTCCGCAAGACGTACAAGGAAAA
                      ____________________________________________________________
consensus             GAGGCCTCCGAGTGCTTTCTTCGTGTTCATGGAGGACTTCCGCAAGACGTACAAGGAAAA
 
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JMFF046I16-           GCATCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
JMFF013J08-           GCATCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
JMSF039H12-           GCATCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
rJMSF039H12+          GCATCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
rJMFF013J08+          GCATCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
rJMFF016J21+          GCATCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
rJMFF046I16+             TCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
                      ____________________________________________________________
consensus             GCATCCAAACAACAAGTCCGTTGCAGCCGTCGGTAAAGCTGGAGGAGACAAATGGAAACA
 
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JMFF046I16-           GCTCACTG-ATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
JMFF013J08-           GCTCACTG-ATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
JMSF039H12-           GCTCACTG-ATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
rJMSF039H12+          GCTCACTG-ATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
rJMFF013J08+          GCTCACTGAATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
rJMFF016J21+          GCTCACTG-ATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
rJMFF046I16+          GCTCACTG-ATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
                      ____________________________________________________________
consensus             GCTCACTG-ATGCTGAGAAAGCTCCTTTCATAGCCAAGGCTGAGAAAAGGAAGCAGGAAT
 
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JMFF046I16-           ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
JMFF013J08-           ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
JMSF039H12-           ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
rJMSF039H12+          ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
rJMFF013J08+          ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
rJMFF016J21+          ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
rJMFF006P07+           CGAAAAGAGCANGCAGGCCTNCAATAGAAANCAGGCCGGGGAAGCTGCCGATGAGGAGG
rJMFF046I16+          ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
                      ____________________________________________________________
consensus             ACGAAAAGAGCATGCAGGCCTACAATAGAAAACAGGCCGGGGAAGCTGCCGATGAGGAGG
 
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JMFF046I16-           AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
JMFF013J08-           AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
JMSF039H12-           AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
rJMSF039H12+          AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
rJMFF013J08+          AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
rJMFF016J21+          AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
rJMFF006P07+          AATCTGNCAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
rJMFF046I16+          AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
                      ____________________________________________________________
consensus             AATCTGACAAGTCAAGGTCAGAGGTGAACGACGATGAGGAGGATGAGGACGGGAGTGCAG
 
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JMFF046I16-           AGGATGATGATGATGACGATGATGATGAGT                              
JMFF013J08-           AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
JMSF039H12-           AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
rJMSF039H12+          AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
rJMFF013J08+          AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
rJMFF016J21+          AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
rJMFF006P07+          AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
rJMFF046I16+          AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
                      ____________________________________________________________
consensus             AGGATGATGATGATGACGATGATGATGAGTAAAGGAAATATGTGTCAGCTTTGTGTAGGG
 
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JMFF013J08-           GGATCTGAAGAAATATGTGATGATGACCTTTCCAT                         
JMSF039H12-           GGATCTGAAGAAATATGTGATGATGACCTTTCCATTAGTTTATAGCAGTTTCTCTTTCCT
rJMSF039H12+          GGATCTGAAGAAATATGTGATGATGACCTTTCCATTAGTTTATAGCAGTTTCTCTTTCCT
rJMFF013J08+          GGATCTGAAGAAATATGTGATGATGACCTTTCCATTAGTTTATAGCAGTTTCTCTTTCCT
rJMFF016J21+          GGATCTGAAGAAATATGTGATGATGACCTTTCCATTAGTTTATAGCAGTTTCTCTTTCCT
rJMFF006P07+          GGATCTGAAGAAATATGTGATGATGACCTTTCCATTAGTTTATAGCAGTTTCTCTTTCCT
rJMFF046I16+          GGATCTGAAGAAATATGTGATGATGACCTTTCCATTAGTTTATAGCAGTTTCTCTTTCCT
                      ____________________________________________________________
consensus             GGATCTGAAGAAATATGTGATGATGACCTTTCCATTAGTTTATAGCAGTTTCTCTTTCCT
 
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JMSF039H12-           GTTTTGCTTTCTTTTGTTTTATGTTTTTTTCGGAAGGA                      
rJMSF039H12+          GTTTTGCTTTCTTTTGTTTTATGTTTTTTTCGGAAGGAGGGTTAGATGGGAAGGGGAAAG
rJMFF013J08+          GTTTTGCTTTCTTTTGTTTTATGTTTTTTTCGGAAGGAGGGTTAGATGGGAAGGGGAAAG
rJMFF016J21+          GTTTTGCTTTCTTTTGTTTTATGTTTTTTTCGGAAGGAGGGTTAGATGGGAAGGGGAAAG
rJMFF006P07+          GTTTTGCTTTCTTTTGTTTTATGTTTTTTTCGGAAGGAGGGTTAGATGGGAAGGGGAAAG
rJMFF046I16+          GTTTTGCTTTCTTTTGTTTTATGTTTTTTTCGGAAGGAGGGTTAGATGGGAAGGGGAAAG
                      ____________________________________________________________
consensus             GTTTTGCTTTCTTTTGTTTTATGTTTTTTTCGGAAGGAGGGTTAGATGGGAAGGGGAAAG
 
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rJMSF039H12+          ATTTACTTCTTAGACAAGTTAGAGCTGTTGGGAGAAATCCACTGCTCTGTGTAC      
rJMFF013J08+          ATTTACTTCTTAGACAAGTTAGAGCTGTTGGGAGAAATCCACTGCTCTGTGTACTTTATT
rJMFF016J21+          ATTTACTTCTTAGACAAGTTAGAGCTGTTGGGAGAAATCCACTGCTCTGTGTACTTTATT
rJMFF006P07+          ATTTACTTCTTAGACAAGTTAGAGCTGTTGGGAGAAATCCACTGCTCTGTGTACTTTATT
rJMFF046I16+          ATTTACTTCTTAGACAAGTTAGAGCTGTTGGGAGAAATCCACTGCTCTGTGTACTTTATT
                      ____________________________________________________________
consensus             ATTTACTTCTTAGACAAGTTAGAGCTGTTGGGAGAAATCCACTGCTCTGTGTACTTTATT
 
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rJMFF013J08+          ATTATGATGATGATT                                             
rJMFF016J21+          ATTATGATGANGATTACGTTTCTTCAATCC                              
rJMFF006P07+          ATTATGATGATGATTACGTTTCTTCAATCC                              
rJMFF046I16+          ATTATGATGATGATTACGTTTCTTCAATCCATTATGGTTAATGATAATTTCTTAGCTAGG
                      ____________________________________________________________
consensus             ATTATGATGATGATTACGTTTCTTCAATCCATTATGGTTAATGATAATTTCTTAGCTAGG