Contig 004129:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045P21Sequence633009130 (4)ref|XP_004173110.1|2e-117PREDICTED: uncharacterized LOC101221472, partial [Cucumis sativus]640004129 (2)ref|XP_006344223.1|79.7PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
JMSF014J07Sequence228009130 (4)ref|XP_002271170.1|106PREDICTED: uncharacterized protein LOC100242361 [Vitis vinifera] emb|CBI17699.3|789004129 (2)ref|XP_009797525.1|5e-28PREDICTED: uncharacterized protein LOC104243941 isoform X1 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF014J07+                                          CTAAAGAGACCAGACGTCAGACCGTAAA
                      ____________________________________________________________
consensus                                             CTAAAGAGACCAGACGTCAGACCGTAAA
 
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rJMSF014J07+          CNTAATCAGACTAAACCAACTATTGAGAGTGCTACACCGAGGAAGTTTGGGAAAATCGAT
                      ____________________________________________________________
consensus             CNTAATCAGACTAAACCAACTATTGAGAGTGCTACACCGAGGAAGTTTGGGAAAATCGAT
 
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rJMSF014J07+          GAAAGTGTTGATGATATTCAAGTCATGAAGCATGATTCTGTTCCGAAAAACGATTCTCAA
                      ____________________________________________________________
consensus             GAAAGTGTTGATGATATTCAAGTCATGAAGCATGATTCTGTTCCGAAAAACGATTCTCAA
 
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rJMSF014J07+          GAATCATTGCAGCCGCCTGAAGGGACAAATGGAACATTCAATTCTATGAGGTTTTGGATC
rJMFF045P21+                              AGGGACAAATGGAACATTCAATTCTATGAGGTTTGGATCC
                      ____________________________________________________________
consensus             GAATCATTGCAGCCGCCTGAAGGGACAAATGGAACATTCAATTCTATGAGGTTTTGGTTC
 
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rJMSF014J07+          ATTGTGCTGTGGGCTGTTTCAATTCTCGCGTTTTTGGCAGTAATGTCAATGATGCTTTCA
rJMFF045P21+          ATTGTGCTGTGGGCTGTTTCAATTCTCGCGTTTTNTGCAGTAATGTCAATGATGCTTTCA
                      ____________________________________________________________
consensus             ATTGTGCTGTGGGCTGTTTCAATTCTCGCGTTTTTTGCAGTAATGTCAATGATGCTTTCA
 
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rJMSF014J07+          CGTCGTAAGGGACTGAAAAGAAGAGGTAAAAGTCACAAGCCCAAGAGAAGAGCCTCACAT
rJMFF045P21+          CGTCGTAAGGGACTGAAAAGAAGAGGTAAAAGTCACAAGCCCAAGAGAAGAGCCTCACAT
                      ____________________________________________________________
consensus             CGTCGTAAGGGACTGAAAAGAAGAGGTAAAAGTCACAAGCCCAAGAGAAGAGCCTCACAT
 
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rJMSF014J07+          TCGGGTTTCTGGGATGGGAATGGCAACGATAGGCATCTTCGAAGTACTGAAACTGCATAA
rJMFF045P21+          TCGGGTTTCTGGGATGGGAATGGCAACGATAGGCATCTTCGAAGTACTGAAACTGCATAA
                      ____________________________________________________________
consensus             TCGGGTTTCTGGGATGGGAATGGCAACGATAGGCATCTTCGAAGTACTGAAACTGCATAA
 
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rJMSF014J07+          CCACCTTTGAGATATTAACGAGACAAAAAAATGCAGCATAGATTTATCTAACCCAGCAAA
rJMFF045P21+          CCACCTNTGAGATATTAACGAGACAAAAAAATGCAGCATAGATTTATCTAACCCAGCAAA
                      ____________________________________________________________
consensus             CCACCTTTGAGATATTAACGAGACAAAAAAATGCAGCATAGATTTATCTAACCCAGCAAA
 
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rJMSF014J07+          GCCCAAGTCGAAGTTCTTTGGAAATGTAAACACAACTCTTTTTAGCATTAAGATCAAGTC
rJMFF045P21+          GCCCAAGTCGAAGTTCTTTGGAAATGTAAACACAACTCTTTTTAGCATTAAGATCAAGTC
                      ____________________________________________________________
consensus             GCCCAAGTCGAAGTTCTTTGGAAATGTAAACACAACTCTTTTTAGCATTAAGATCAAGTC
 
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rJMSF014J07+          GGTCTTCCAGATTACGAGATTGGTTATTGTGAAGGGATGTAATTTTGGTATTCCATTGTC
rJMFF045P21+          GGTCTTCCAGATTACGAGATTGGTTATTGTGAAGGGATGTAATTTTGGTATTCCATTGTC
                      ____________________________________________________________
consensus             GGTCTTCCAGATTACGAGATTGGTTATTGTGAAGGGATGTAATTTTGGTATTCCATTGTC
 
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rJMSF014J07+          CTGGTAAAGAAAGATGTCAACTGAAACTGGAGGGTACATAAGCACAAGTGAAAACAAACC
rJMFF045P21+          CTGGTAAAGAAAGATGTCAACTGAAACTGGAGGGTACATAAGCACAAGTGAAAACAAACC
                      ____________________________________________________________
consensus             CTGGTAAAGAAAGATGTCAACTGAAACTGGAGGGTACATAAGCACAAGTGAAAACAAACC
 
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rJMSF014J07+          AAGCTTGACAGGCTGAACAATAATACTCAGATACCACTTTTCCAGTGTTTTTCTTCTGTT
rJMFF045P21+          AAGCTTGACAGGCTGAACAATAATACTCAGATACCACTTTTCCAGTGTTTTTCTTCTGTT
                      ____________________________________________________________
consensus             AAGCTTGACAGGCTGAACAATAATACTCAGATACCACTTTTCCAGTGTTTTTCTTCTGTT
 
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rJMSF014J07+          CCTTCAATTCTTCTAACATTTGTGTAGCATATTCTACAAACAAAAGAAAGAGAGAAACAA
rJMFF045P21+          CCTTCAATTCTTCTAACATTTGTGTAGCATATTCTACAAACAAAAGAAAGAGAGAAACAA
                      ____________________________________________________________
consensus             CCTTCAATTCTTCTAACATTTGTGTAGCATATTCTACAAACAAAAGAAAGAGAGAAACAA
 
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rJMSF014J07+          GAATTTCACAACTTTTTTGTATTATT                                  
rJMFF045P21+          GAATTTCACAACTTTTTTGTATTATTTGTTGCCAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             GAATTTCACAACTTTTTTGTATTATTTGTTGCCAAAAAAAAAAAAAAAACTCTCCAGGGT