| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016B06 | Sequence | 561 | 010195 (6) | ref|XP_006345083.1| | 1e-34 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X3 [Solanum tuberos | 818 | 004128 (5) | ref|XP_009596648.1| | 9e-99 | PREDICTED: serine protease SPPA, chloroplastic isoform X3 [Nicotiana tomentosif |
| JMFF045P02 | Sequence | 449 | 010195 (6) | 525 | 004128 (5) | ref|XP_006345081.1| | 1e-08 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X1 [Solanum tuberos | |||
| JMSF004I19 | Sequence | 320 | 010195 (6) | 332 | 004128 (5) | ref|XP_009596646.1| | 8e-11 | PREDICTED: serine protease SPPA, chloroplastic isoform X1 [Nicotiana tomentosif | |||
| JMSF051I01 | Sequence | 673 | 010195 (6) | ref|XP_006345083.1| | 3e-55 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X3 [Solanum tuberos | 726 | 004128 (5) | ref|XP_009596648.1| | 9e-113 | PREDICTED: serine protease SPPA, chloroplastic isoform X3 [Nicotiana tomentosif |
| JMSF051K07 | Sequence | 700 | 010195 (6) | ref|XP_006345083.1| | 8e-69 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X3 [Solanum tuberos | 758 | 004128 (5) | ref|XP_009596648.1| | 3e-94 | PREDICTED: serine protease SPPA, chloroplastic isoform X3 [Nicotiana tomentosif |
This contig is upended
. : . : . : . : . : . :
rJMSF051I01+ TGGCAGAAACCNTACATTGACTGGTTCAAT
____________________________________________________________
consensus TGGCAGAAACCNTACATTGACTGGTTCAAT
. : . : . : . : . : . :
rJMSF051I01+ TGGAGTTGTGACAGGGAAGTTTAATCTTGGGAATTTATATGAAAAGATTGGCTTCAACAA
rJMSF051K07+ CAA
rJMFF016B06+ CAA
____________________________________________________________
consensus TGGAGTTGTGACAGGGAAGTTTAATCTTGGGAATTTATATGAAAAGATTGGCTTCAACAA
. : . : . : . : . : . :
rJMSF051I01+ GGAGATAATATCAAGGGGTAGATTTGCAGAGCTTACTGCTGCTGACCAGCGATCATTCAG
rJMSF051K07+ GGAGATAATATCAAGGGGTAGATTTGCAGAGCTTACTGCTGCTGACCAGCGATCATTCAG
rJMFF016B06+ GGAGATAATATCAAGGGGTAGATTTGCAGAGCTTACTGCTGCTGACCAGCGATCATTCAG
____________________________________________________________
consensus GGAGATAATATCAAGGGGTAGATTTGCAGAGCTTACTGCTGCTGACCAGCGATCATTCAG
. : . : . : . : . : . :
rJMSF051I01+ GCCTGATGAAGCAGAATTATTTGAGAAATCTGCACAGAACGCATACAAACAATTCCGAGA
rJMSF051K07+ GCCTGATGAAGCAGAATTATTTGAGAAATCTGCACAGAACGCATACAAACAATTCCGAGA
rJMFF016B06+ GCCTGATGAAGCAGAATTATTTGAGAAATCTGCACAGAACGCATACAAACAATTCCGAGA
____________________________________________________________
consensus GCCTGATGAAGCAGAATTATTTGAGAAATCTGCACAGAACGCATACAAACAATTCCGAGA
. : . : . : . : . : . :
rJMSF051I01+ TAAGGCAGCATTTTCAAGATCAATGAGTGTAGACAAAATGGAAGAGGTTGCACAAGGGAG
rJMSF051K07+ TAAGGCAGCATTTTCAAGATCAATGAGTGTAGACAAAATGGAAGAGGTTGCACAAGGGAG
rJMFF016B06+ TAAGGCAGCATTTTCAAGATCAATGAGTGTAGACAAAATGGAAGAGGTTGCACAAGGGAG
____________________________________________________________
consensus TAAGGCAGCATTTTCAAGATCAATGAGTGTAGACAAAATGGAAGAGGTTGCACAAGGGAG
. : . : . : . : . : . :
rJMSF051I01+ GGTTTGGACCGGCAATGATGCTGCTTCACGAGGCCTTGTTGACGCAATTGGTGGTATTTC
rJMSF051K07+ GGTTTGGACCGGCAATGATGCTGCTTCACGAGGCCTTGTTGACGCAATTGGTGGTATTTC
rJMFF016B06+ GGTTTGGACCGGCAATGATGCTGCTTCACGAGGCCTTGTTGACGCAATTGGTGGTATTTC
____________________________________________________________
consensus GGTTTGGACCGGCAATGATGCTGCTTCACGAGGCCTTGTTGACGCAATTGGTGGTATTTC
. : . : . : . : . : . :
rJMSF051I01+ TCGTGCTGTCGCAATAGCAAAACAAAAGGCCAACATACCTCAGGAAAGACAGGTTGATGT
rJMSF051K07+ TCGTGCTGTCGCAATAGCAAAACAAAAGGCCAACATACCTCAGGAAAGACAGGTTGATGT
rJMFF016B06+ TCGTGCTGTCGCAATAGCAAAACAAAAGGCCAACATACCTCAGGAAAGACAGGTTGATGT
____________________________________________________________
consensus TCGTGCTGTCGCAATAGCAAAACAAAAGGCCAACATACCTCAGGAAAGACAGGTTGATGT
. : . : . : . : . : . :
rJMSF051I01+ TGTTGAGATGTCAAAGCCTTCCCCGACGTTGCCAGAAATATTGAGCGGTGTAGGGAGCAG
rJMSF051K07+ TGTTGAGATGTCAAAGCCTTCCCCGACGTTGCCAGAAATATTGAGCGGTGTAGGGAGCAG
rJMFF016B06+ TGTTGAGATGTCAAAGCCTTCCCCGACGTTGCCAGAAATATTGAGCGGTGTAGGGAGCAG
____________________________________________________________
consensus TGTTGAGATGTCAAAGCCTTCCCCGACGTTGCCAGAAATATTGAGCGGTGTAGGGAGCAG
. : . : . : . : . : . :
rJMSF051I01+ TTTAGCTGGAGCTGACAGAAGTTTGAAAGAATTGTTAAATGAGTTGGCATCTAGTGATGG
rJMSF004I19+ GGAGCTGACAGAAGTNCGAAAGAATTGTTAAANGAGTTGGCATCTAGTGATGG
rJMSF051K07+ TTTAGCTGGAGCTGACAGAAGTTTGAAAGAATTGTTAAATGAGTTGGCATCTAGTGATGG
rJMFF016B06+ TTTAGCTGGAGCTGACAGAAGTTTGAAAGAATTGTTAAATGAGTTGGCATCTAGTGATGG
rJMFF045P02+ TTAGCAGGAGTTGACAGAAGTTTGAAAGAATCGTTAAATGAGTTGGCATCTAGTGATGG
____________________________________________________________
consensus TTTAGCTGGAGCTGACAGAAGTTTGAAAGAATTGTTAAATGAGTTGGCATCTAGTGATGG
. : . : . : . : . : . :
rJMSF051I01+ AATCCAAGCTCGAATGGACGGAATCATGTTTGAGAAGTTGGAAGGAGCTGCTGCTCATGG
rJMSF004I19+ AATCCAAGCTCGAATGGACGGAATCATGTTTGAGAAGTTGGAAGGAGCTGCTGCTCATGG
rJMSF051K07+ AATCCAAGCTCGAATGGACGGAATCATGTTTGAGAAGTTGGAAGGAGCTGCTGCTCATGG
rJMFF016B06+ AATCCAAGCTCGAATGGACGGAATCATGTTTGAGAAGTTGGAAGGAGCTGCTGCTCATGG
rJMFF045P02+ AATGCAAGCTCGAATGAAGGGAATCATGTCTGAGAAGTGGGAAGGAGCTGATGCTCATGG
____________________________________________________________
consensus AATCCAAGCTCGAATGGACGGAATCATGTTTGAGAAGTTGGAAGGAGCTGCTGCTCATGG
. : . : . : . : . : . :
rJMSF051I01+ AAACCCCTTACTCATGTTGATAAAAGATTGCCTCAGTTCCCTATAAATTTCAATTAGCCT
rJMSF004I19+ AAACCCCTTACTCATGTTGATAAAAGATTGCCTCAGTTCCCTATAAATTTCAATTAGCCT
rJMSF051K07+ AAACCCCTTACTCATGTTGATAAAAGATTGCCTCAGTTCCCTATAAATTTCAATTAGCCT
rJMFF016B06+ AAACCCCTTACTCATGTTGATAAAAGATTGCCTCAGTTACCTATAAATTTCAATTAGCCT
rJMFF045P02+ AACCCCCTTAGTCATGTTGATAAAAGATAGCCTCAGTTTCATATAAATTTCAATTAGCCT
____________________________________________________________
consensus AAACCCCTTACTCATGTTGATAAAAGATTGCCTCAGTTCCCTATAAATTTCAATTAGCCT
. : . : . : . : . : . :
rJMSF051I01+ CTCATTTCACCTTCATTACGATTTGACCATTCTTTACTACTCCGTATAAAGTTTCTTATA
rJMSF004I19+ CTCATNTCACCTTCATTACGATTTGACCATTCTTTACTACTCCGTATAAAGTTTCTTATA
rJMSF051K07+ CTCATTTCACCTTCATTACGATTTGACCATTCTTTACTACTCCGTATAAAGTTTCTTATA
rJMFF016B06+ CTCATTTCACCTTCATTACGATTTGACCATTCTTTACTACTCCGTATAAAGTTTCTTATA
rJMFF045P02+ CTCATTTCACGTTCAATTCGATCCGACCATTCTTTATTGGGGGGTATAAAGTTTCTTATA
____________________________________________________________
consensus CTCATTTCACCTTCATTACGATTTGACCATTCTTTACTACTCCGTATAAAGTTTCTTATA
. : . : . : . : . : . :
rJMSF051I01+ CAGTAAAGCAGCATTTCCACGGCCTTTATCTAATGC
rJMSF004I19+ CAGTAAAGCAGCATTTCCACGGCCTTTATCTAATGCTGGCCGCNGGATAGTCAAATTAAG
rJMSF051K07+ CAGTAAAGCAGCATTTCCACGGCCTTTATCTAATGCTGGCCGCTGGATAGTCAAATTAAG
rJMFF016B06+ CAGTAAAGCAGCATTTCCACGGCCTTTATCTAATGCTGGCCGCTGGATAGTCAAATTAAG
rJMFF045P02+ CAGTAAAGCAGCATTTCCACGGCCGGAATTTAATGCGGGCCGCTGGATAGTCAAATTAAG
____________________________________________________________
consensus CAGTAAAGCAGCATTTCCACGGCCTTTATCTAATGCTGGCCGCTGGATAGTCAAATTAAG
. : . : . : . : . : . :
rJMSF004I19+ GGAAAATTGTATTTATCATCCTNAAGNTATAGGGTAATT
rJMSF051K07+ GGAAAATTGTATTTATCATCCTTAAGTTATAGGGTAATTGTAGAATTTGTTCTTATTGTT
rJMFF016B06+ GGAAAATTGTATTTATCATCCTTAAGTTATAGGGTAATTGTAGAATTTGTTCTTATTGTT
rJMFF045P02+ GGAAAATGGTCTTAATCATCCTCAAGTTATAGGGTAATTGTAGAATTTGTTTTTATTGTT
____________________________________________________________
consensus GGAAAATTGTATTTATCATCCTTAAGTTATAGGGTAATTGTAGAATTTGTTCTTATTGTT
. : . : . : . : . : . :
rJMSF051K07+ GGTTATGCTCACT
rJMFF016B06+ GGTTATGCTCACTTTTCATTCTTAAGATATCTTTAGCATTGTACT
rJMFF045P02+ GGTTATGCTCACTTTTCATTCGTAAGATATGGTCAGCATTGTACTCAGTGTCCAAATATT
____________________________________________________________
consensus GGTTATGCTCACTTTTCATTCTTAAGATATGTTTAGCATTGTACTCAGTGTCCAAATATT
. : . : . : . : . : . :
rJMFF045P02+ AAATTTTTAGCGTCGACTTTTTGTTCATAAGCTAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus AAATTTTTAGCGTCGACTTTTTGTTCATAAGCTAAAAAAAAAAAAAAAACTCTCCAGGGT