Contig 004122:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031L12Sequence544007472 (5)ref|XP_009794644.1|264PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris]369004122 (4)ref|XP_011043650.1|122PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Populus euphratica]
JMFF041P24Sequence649007472 (5)ref|XP_009794644.1|314PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris]599004122 (4)emb|CDP10626.1|8e-74unnamed protein product [Coffea canephora]
JMFF045F02Sequence611007472 (5)ref|XP_009794644.1|290PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris]646004122 (4)ref|XP_011043650.1|236PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Populus euphratica]
JMSF026N21Sequence642007472 (5)ref|XP_009794644.1|311PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris]724004122 (4)emb|CDP10626.1|7e-109unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF026N21+                                                            AAGACCCGGG
                      ____________________________________________________________
consensus                                                               AAGACCCGGG
 
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rJMSF026N21+          CCATTGCNTGCTGGATCAAACAGGTTTTGGGCTGTAATACAAGGCAAGGGCGGGCACGCT
                      ____________________________________________________________
consensus             CCATTGCNTGCTGGATCAAACAGGTTTTGGGCTGTAATACAAGGCAAGGGCGGGCACGCT
 
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rJMSF026N21+          GCATCCCCACATAAAACCAGAGACCCTGTTCTTGCTCTATCTATGGCCATTCTTGCTCTC
                      ____________________________________________________________
consensus             GCATCCCCACATAAAACCAGAGACCCTGTTCTTGCTCTATCTATGGCCATTCTTGCTCTC
 
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rJMSF026N21+          CAACAGCTTGTTTCTCGAGAAACTGATCCCCTTGAGGCCAGGGTCGTTTCAATTGGATAC
rJMFF041P24+                                                   GGTCGTTTCAATTGGATAC
rJMFF045F02+                                                   GGTCGTTTCAATNGGATAC
                      ____________________________________________________________
consensus             CAACAGCTTGTTTCTCGAGAAACTGATCCCCTTGAGGCCAGGGTCGTTTCAATTGGATAC
 
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rJMSF026N21+          GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTTTT
rJMFF041P24+          GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTTTT
rJMFF045F02+          GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTNTT
                      ____________________________________________________________
consensus             GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTTTT
 
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rJMSF026N21+          CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
rJMFF041P24+          CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
rJMFF045F02+          CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
                      ____________________________________________________________
consensus             CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
 
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rJMSF026N21+          ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
rJMFF041P24+          ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
rJMFF045F02+          ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
                      ____________________________________________________________
consensus             ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
 
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rJMSF026N21+          CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
rJMFF041P24+          CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
rJMFF031L12+           CCTACCCACCCACAGTTAACGATCAAGCNATGTATGAACACGCAAAGAAAGTTGGAGAA
rJMFF045F02+          CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
                      ____________________________________________________________
consensus             CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
 
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rJMSF026N21+          ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
rJMFF041P24+          ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
rJMFF031L12+          ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
rJMFF045F02+          ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
                      ____________________________________________________________
consensus             ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
 
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rJMSF026N21+          AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
rJMFF041P24+          AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
rJMFF031L12+          AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCNTNGTAATTGGTGTAAGCAATGAGACG
rJMFF045F02+          AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
                      ____________________________________________________________
consensus             AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
 
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rJMSF026N21+          ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
rJMFF041P24+          ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
rJMFF031L12+          ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTNTACCC
rJMFF045F02+          ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
                      ____________________________________________________________
consensus             ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
 
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rJMSF026N21+          ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
rJMFF041P24+          ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
rJMFF031L12+          ATAGGAGCAGCTNTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
rJMFF045F02+          ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
                      ____________________________________________________________
consensus             ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
 
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rJMSF026N21+          CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTAC                 
rJMFF041P24+          CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTACAAGTTAGGATGTGAACA
rJMFF031L12+          CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATNTTTTACAAGTTAGGATGTGANCA
rJMFF045F02+          CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTACAAGTTAGGATGTGAACA
                      ____________________________________________________________
consensus             CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTACAAGTTAGGATGTGAACA
 
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rJMFF041P24+          TACAAAATCATGAATAAACAACGTTGCATTACACC                         
rJMFF031L12+          TACAAAATCA                                                  
rJMFF045F02+          TACAAAATCATGAATAAACAACGTTGCATTACACCAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TACAAAATCATGAATAAACAACGTTGCATTACACCAAAAAAAAAAAAAACTCTCCAGGGT