Contig 004121:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004H02Sequence388004121 (9)ref|XP_006339901.1|71.6PREDICTED: heat shock factor protein HSF24-like [Solanum tuberosum]579004121 (9)ref|XP_009797839.1|3e-07PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris]
JMFF009K14Sequence518003138 (4)ref|XP_006425894.1|1e-14hypothetical protein CICLE_v10026058mg [Citrus clementina] gb|ESR39134.1| hypoth696004121 (9)ref|XP_009797839.1|1e-46PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris]
JMFF017E10Sequence604003138 (4)ref|XP_006425894.1|6e-36hypothetical protein CICLE_v10026058mg [Citrus clementina] gb|ESR39134.1| hypoth728004121 (9)ref|XP_009797839.1|1e-53PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris]
JMFF025D14Sequence148004121 (9)ref|XP_009589845.1|6e-14PREDICTED: heat shock factor protein HSF24 [Nicotiana tomentosiformis]
JMFF043G11Sequence645003138 (4)ref|XP_009589845.1|6e-58PREDICTED: heat shock factor protein HSF24 [Nicotiana tomentosiformis]646004121 (9)ref|XP_009797839.1|2e-21PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris]
JMFF045E09Sequence599004121 (9)ref|XP_006339901.1|71.6PREDICTED: heat shock factor protein HSF24-like [Solanum tuberosum]603004121 (9)ref|XP_009797839.1|2e-12PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris]
JMFF048N01Sequence431003138 (4)ref|NP_001119129.1|7e-08uncharacerized protein [Arabidopsis thaliana] gb|AEE86731.1| uncharacerized prot313004121 (9)

Alignment

This contig is upended


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rJMFF017E10+                         TCCAAGAACCCCGGGTCGGTGGACACTCCAGGGAAGTCGCAGTTC
rJMFF009K14+                                                          AAGTCGCAGTTC
                      ____________________________________________________________
consensus                            TCCAAGAACCCCGGGTCGGTGGACACTCCAGGGAAGTCGCAGTTC
 
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rJMFF017E10+          CCGGACTTGACAGACGAAAACGAGAAGCTGAAGAGAGACAACCAGATGCTGAGCTCAGAG
rJMFF025D14+                                                             AGCTCAGAG
rJMFF009K14+          CCGGACTTGACAGACGAAAACGAGAAGCTGAAGAGAGACAACCAGATGCTGAGCTCAGAG
                      ____________________________________________________________
consensus             CCGGACTTGACAGACGAAAACGAGAAGCTGAAGAGAGACAACCAGATGCTGAGCTCAGAG
 
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rJMFF017E10+          TTGGCACAGACCAAGAAGCAGTGCGAGGNGCTGGTGACCTTCCTGACTCAGTACGTGAAG
rJMFF025D14+          TTGGCACAGACCAAGAAGCAGTGCGAGGAGNTGGTGACCTTCCTGACTCAGTACGTGAAG
rJMFF009K14+          TTGGCACAGACCAAGAAGCAGTGCGAGGAGCTGGTGACCTTCCTGACTCAGTACGTGAAG
rJMFF043G11+                            CAGTGCGAGGAGCTGGTGACCTTCCTGACTCAGTACGTGAAG
                      ____________________________________________________________
consensus             TTGGCACAGACCAAGAAGCAGTGCGAGGAGCTGGTGACCTTCCTGACTCAGTACGTGAAG
 
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rJMFF017E10+          GTTGTGCCCGAACAGATCAACCGCATCATGAGCCAAGGAATCTCCGGGTCCAGCCACGAC
JMFF004H02-                                                        GGGTCCAGCCACGAC
rJMFF025D14+          GTTGTGCCCGAACAGATCAACCGCATCATGAGCCAAGGAATCTCCGGGTCCAGCCACGAC
rJMFF009K14+          GTTGTGCCCGAACAGATCAACCGCATCATGAGCCAAGGAATCTCCGGGTCCAGCCACGAC
rJMFF043G11+          GTTGTGCCCGAACAGATCAACCGCATCATGAGCCAAGGAATCTCCGGGTCCAGCCACGAC
rJMFF004H02+                                                       GGGTCCAGCCACGNC
JMFF045E09-                                                        GGGTCCAGCCACGAC
rJMFF045E09+                                                                   GAC
                      ____________________________________________________________
consensus             GTTGTGCCCGAACAGATCAACCGCATCATGAGCCAAGGAATCTCCGGGTCCAGCCACGAC
 
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rJMFF017E10+          GATTCCATTAACAAGGTTGACAATTCTGCAGATCTGAATTCAAGCCAGAACAAAGATGAT
JMFF004H02-           GATTCCATTAACAAGGTTGACAATTCTGCAGATCTGAATTCAAGCCAGAACAAAGATGAT
rJMFF025D14+          GATTCCATTAACAAGGTTG                                         
rJMFF009K14+          GATTCCATTAACAAGGTTGACAATTCTGCAGATCTGAATTCAAGCCAGAACAAAGATGAT
rJMFF043G11+          GATTCCATTAACAAGGTTGACAATTCTGCAGATCTGAATTCAA-CCAGAACAAAGATGAT
rJMFF004H02+          GATTCCATTAACAAGGTTGNCAATTCTGCAGATCTGAATTCAAGCCAGAACAAAGATGAT
JMFF045E09-           GATTCCATTAACAAGGTTGACAATTCTGCAGATCTGAATTCAAGCCAGAACAAAGATGAT
rJMFF045E09+          GATTCCATTAACAAGGTTGACAATTCTGCAGATCTGAATTCAAGCCAGAACAAAGATGAT
                      ____________________________________________________________
consensus             GATTCCATTAACAAGGTTGACAATTCTGCAGATCTGAATTCAAGCCAGAACAAAGATGAT
 
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rJMFF017E10+          GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
JMFF004H02-           GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
rJMFF009K14+          GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
rJMFF043G11+          GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
rJMFF004H02+          GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
JMFF045E09-           GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
rJMFF045E09+          GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
                      ____________________________________________________________
consensus             GATGATGATGATGACGAAAATGGAGAGACTTTGAAGTTATTCGGTGTGTTGTTGAAAGAG
 
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rJMFF017E10+          AAGAAGAGAAAGAGGGATCACGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
JMFF004H02-           AAGAAGAGAAAGAGGGATCACGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
rJMFF009K14+          AAGAAGAGAAAGAGGGATCACGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
rJMFF043G11+          AAGAAGAGAAAGAGGGATCACGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
rJMFF004H02+          AAGAAGAGAAAGAGGGATCNCGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
JMFF045E09-           AAGAAGAGAAAGAGGGATCACGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
rJMFF045E09+          AAGAAGAGAAAGAGGGATCCCGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
                      ____________________________________________________________
consensus             AAGAAGAGAAAGAGGGATCACGACGACAACACTGATTTCTCTGCTGCAAGTACCAAGGAG
 
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rJMFF017E10+          ATGAAGCCATCTATTGACTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
JMFF004H02-           ATGAAGCCATCTATTGACTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
rJMFF009K14+          ATGAAGCCATCTATTGACTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
rJMFF043G11+          ATGAAGCCATCTATTGACTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
rJMFF004H02+          ATGAAGCCATCTATTGANTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
JMFF045E09-           ATGAAGCCATCTATTGACTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
rJMFF048N01+                                        CCATGGATGAAAATTTTTCCGGTGCCTGGG
rJMFF045E09+          ATGAAGCCATCTATTGACTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
                      ____________________________________________________________
consensus             ATGAAGCCATCTATTGACTGCAAGAACGCACCATGGATGAAAATCTCTCCGGTGCCTGGG
 
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rJMFF017E10+          AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
JMFF004H02-           AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
rJMFF009K14+          AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
rJMFF043G11+          AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
rJMFF004H02+          AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
JMFF045E09-           AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
rJMFF048N01+          AAGAGCGGCAAAGTCTGTAACTAAGGGGCTGATGCTTGTTCGCCATTTTTTGCAAGTTCA
rJMFF045E09+          AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
                      ____________________________________________________________
consensus             AAGAGCGGCAAAGTCTGTAACTAACGGGCTGATGCTTGTTCGCCATTTCTGTCAAGTTCA
 
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rJMFF017E10+          GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
JMFF004H02-           GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
rJMFF009K14+          GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
rJMFF043G11+          GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
rJMFF004H02+          GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
JMFF045E09-           GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
rJMFF048N01+          GCTAAATTCCAGTGTTTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
rJMFF045E09+          GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
                      ____________________________________________________________
consensus             GCTAAATTCCAGTGTCTGTGAGGGTCATAGAATGATAGGGTGACCAATATCCAACATTTT
 
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rJMFF017E10+          TATGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
JMFF004H02-           TATGTAAAACTAA                                               
rJMFF009K14+          TATGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
rJMFF043G11+          TATGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
rJMFF004H02+          TANGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
JMFF045E09-           TATGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
rJMFF048N01+          TATGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
rJMFF045E09+          TATGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
                      ____________________________________________________________
consensus             TATGTAAAACTAAATACATAGGTTATAAGGTTGGCTTGTGAAAATAAAAACTAAGAATAA
 
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rJMFF017E10+          TGTTTTTCCTTGTGTCTTTGCTGTTTATTAAGACCAAATGGTATGTCTTAACAAATGAAC
rJMFF009K14+          TGTTTTTCCTTGTGTCTTTGCTGTTTATTAAGACCAAATGGTATGTCTTAACAAATGAAC
rJMFF043G11+          TGTTTTTCCTTGTGTCTTTGCTGTTTATTAAGACCAAATGGTATGTCTTAACAAATGAAC
rJMFF004H02+          TGTTTTTCCTTGTGTCTTTGCTGTTTATTAAGACCAAATGGTATGTCTTAACAAATGAAC
JMFF045E09-           TGTTTTTCCTTGTGTCTTTGCTGTTTATTAAGACCAAATGGTATGTCTTAACAAATGAAC
rJMFF048N01+          TGTTTTTCCTTGGGTCTTTGCGGTTTATTAAGACCAAATGGTATGTTTTAACAAATGACC
rJMFF045E09+          TGTTTTTCCTTGTGTCTTTGCTGTTTATTAAGACCAAATGGTATGTCTTAACAAATGAAC
                      ____________________________________________________________
consensus             TGTTTTTCCTTGTGTCTTTGCTGTTTATTAAGACCAAATGGTATGTCTTAACAAATGAAC
 
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rJMFF017E10+          ATTGAATTATAGTGTCTAAGAGA                                     
rJMFF009K14+          ATTGAATTATAGTGTCTAAGAGAT                                    
rJMFF043G11+          ATTGAATTATAGTGTCTAAGAGATATGTTGTTGTCTTGTCTA                  
rJMFF004H02+          ATTGAATNATAGTGTCTAAGAGATATGTTGTTGTCTTGTCTATCTACTTNGATTTACGAA
JMFF045E09-           ATTGAATTATAGTGTCTAAGAGATATGTTGTTGTCTTGTCTATCTACTTTGATTTACGAA
rJMFF048N01+          ATTGAATTATAGTGTTTAAGAGATATGTTGTTGTTTTGT                     
rJMFF045E09+          ATTGAATTATAGTGTCTAAGAGATATGTTGTTGTCTTGTCTATCTACTTTGATTTACGAA
                      ____________________________________________________________
consensus             ATTGAATTATAGTGTCTAAGAGATATGTTGTTGTCTTGTCTATCTACTTTGATTTACGAA
 
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rJMFF004H02+          AATCTCATAATTGATTGGCAGTTG                                    
JMFF045E09-           AATCTCATAATTGATTGGCAGTTGAAGTTTAACACTTTAACTAA                
rJMFF045E09+          AATCTCATAATTGATTGGCAGTTGAAGTTTAACACTTTAACTAATTCAAATGAAAAAAAG
                      ____________________________________________________________
consensus             AATCTCATAATTGATTGGCAGTTGAAGTTTAACACTTTAACTAATTCAAATGAAAAAAAG