| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003J13 | Sequence | 707 | 004118 (6) | ref|XP_009804653.1| | 7e-24 | PREDICTED: uncharacterized protein LOC104249841 isoform X2 [Nicotiana sylvestri | |||||
| JMFF044O03 | Sequence | 392 | 004118 (6) | ref|XP_009804653.1| | 3e-15 | PREDICTED: uncharacterized protein LOC104249841 isoform X2 [Nicotiana sylvestri | 392 | 004118 (6) | ref|XP_009804653.1| | 3e-15 | PREDICTED: uncharacterized protein LOC104249841 isoform X2 [Nicotiana sylvestri |
| JMFN006P12 | Sequence | 636 | 004118 (6) | ref|XP_009804653.1| | 5e-25 | PREDICTED: uncharacterized protein LOC104249841 isoform X2 [Nicotiana sylvestri | |||||
| JMFN037D18 | Sequence | 164 | 004118 (6) | ||||||||
| JMFN039I12 | Sequence | 646 | 004118 (6) | ref|XP_009804653.1| | 2e-25 | PREDICTED: uncharacterized protein LOC104249841 isoform X2 [Nicotiana sylvestri | |||||
This contig is upended
. : . : . : . : . : . :
JMFN039I12+ ATTAAAATT
rJMFF003J13- ATTATTTGTTCGAGAGTACAAACATACAAATTAAAGCGGAGCAATTAAAATT
____________________________________________________________
consensus ATTATTTGTTCGAGAGTACAAACATACAAATTAAAGCGGAGCAATTAAAATT
. : . : . : . : . : . :
JMFN039I12+ AAACATACACATGGCAGAGAAAAATAAATGAATTAAAAACAAGGATAAATCAATGTTTCT
JMFN006P12+ ATGGCAGAGAAAAATAAATGAATTAAAAACAAGGATAAATCAATGTTTCT
rJMFF003J13- AAACATACACATGGCAGAGAAAAATAAATGAATTAAAAACAAGGATAAATCAATGTTTCT
____________________________________________________________
consensus AAACATACACATGGCAGAGAAAAATAAATGAATTAAAAACAAGGATAAATCAATGTTTCT
. : . : . : . : . : . :
JMFN039I12+ TCAAGAAATCTCCGGCCATCTTAGCATATTCTCCATATTTATTTCCAGAATGAGATTGGC
JMFN006P12+ TCAAGAAATCTCCGGCCATCTTAGCATATTCTCCATATTTATTTCCAGAATGAGATTGGC
rJMFF003J13- TCAAGAAATCTCCGGCCATCTTAGCATATTCTCCATATTTATTTCCAGAATGAGATTGGC
____________________________________________________________
consensus TCAAGAAATCTCCGGCCATCTTAGCATATTCTCCATATTTATTTCCAGAATGAGATTGGC
. : . : . : . : . : . :
JMFN039I12+ TTGTGGTGGTGGTAGAAGATTCATGTTTATTGAAAATCCCTTCTGCCATCTTTATATACT
JMFN006P12+ TTGTGGTGGTGGTAGAAGATTCATGTTTATTGAAAATCCCTTCTGCCATCTTTATATACT
rJMFF003J13- TTGTGGTGGTGGTAGAAGATTCATGTTTATTGAAAATCCCTTCTGCCATCTTTATATACT
____________________________________________________________
consensus TTGTGGTGGTGGTAGAAGATTCATGTTTATTGAAAATCCCTTCTGCCATCTTTATATACT
. : . : . : . : . : . :
JMFN039I12+ CCCCGTACCCACCGGAGTGATGATTACCCCCGGAATGCCCAGAAGAATGAGCGTGTTGGG
JMFN006P12+ CCCCGTACCCACCGGAGTGATGATTACCCCCGGAATGCCCAGAAGAATGAGCGTGTTGGG
rJMFF003J13- CCCCGTACCCACCGGAGTGATGATTACCCCCGGAATGCCCAGAAGAATGAGCGTGTTGGG
____________________________________________________________
consensus CCCCGTACCCACCGGAGTGATGATTACCCCCGGAATGCCCAGAAGAATGAGCGTGTTGGG
. : . : . : . : . : . :
JMFN039I12+ CGGCGGCGGTGGAGTGGTGGGTGGATCCGGCGGTGGCGGTGGCAGTTTGGGAATGGGAAG
JMFN006P12+ CGGCGGCGGTGGAGTGGTGGGTGGATCCGGCGGTGGCGGTGGCAGTTTGGGAATGGGAAG
rJMFF003J13- CGGCGGCGGTGGAGTGGTGGGTGGATCCGGCGGTGGCGGTGGCAGTTTGGGAATGGGAAG
JMFF044O03+ GGCGGTGGCGGTGGCAGTTTGGGAATGGGAAG
rJMFF044O03- GGCGGTGGCGGTGGCAGTTTGGGAATGGGAAG
____________________________________________________________
consensus CGGCGGCGGTGGAGTGGTGGGTGGATCCGGCGGTGGCGGTGGCAGTTTGGGAATGGGAAG
. : . : . : . : . : . :
JMFN039I12+ TGTGGTACTTGTGGAGATAATCCTCCGCTTTCCCGACATACTTACCCATCCCCTTCTCCT
JMFN006P12+ TGTGGTACTTGTGGAGATAATCCTCCGCTTTCCCGACATACTTACCCATCCCCTTCTCCT
rJMFF003J13- TGTGGTACTTGTGGAGATAATCCTCCGCTTTCCCGACATACTTACCCATCCCCTTCTCCT
JMFF044O03+ TGTGGTACTTGTGGAGATAATCCTCCGCTTTCCCGACATACTTACCCATCCCCTTCTCCT
rJMFF044O03- TGTGGTACTTGTGGAGATAATCCTCCGCTTTCCCGACATACTTACCCATCCCCTTCTCCT
____________________________________________________________
consensus TGTGGTACTTGTGGAGATAATCCTCCGCTTTCCCGACATACTTACCCATCCCCTTCTCCT
. : . : . : . : . : . :
JMFN039I12+ CTAGCTTCCCGTAATGCGAGGCCGCGTTGAGAAGATCGGCGGCGGCCCCGGCTAACTCCG
JMFN006P12+ CTAGCTTCCCGTAATGCGAGGCCGCGTTGAGAAGATCGGCGGCGGCCCCGGCTAACTCCG
rJMFF003J13- CTANCTTCCCGTAATGCGAGGCCGCGTTGAGAAGATCGGCGGCGGCCCCGGCTAACTCCG
JMFF044O03+ CTAGCTTCCCGTAATGCGAGGCCGCGTTGAGAAGATCGGCGGCGGCCCCGGCTAACTCCG
rJMFF044O03- CTAGCTTCCCGTAATGCGAGGCCGCGTTGAGAAGATCGGCGGCGGCCCCGGCTAACTCCG
____________________________________________________________
consensus CTAGCTTCCCGTAATGCGAGGCCGCGTTGAGAAGATCGGCGGCGGCCCCGGCTAACTCCG
. : . : . : . : . : . :
JMFN039I12+ CCTTGTCTGCCTTGTTCGGCTTGTTGGGATCGTGATGAAGCGTTGACTTGGCCGCTTCCC
JMFN006P12+ CCTTGTCTGCCTTGTTCGGCTTGTTGGGATCGTGATGAAGCGTTGACTTGGCCGCTTCCC
rJMFF003J13- CCTTGTCTGCCTTGTTCGGCTTGTTGGGATCGTGATGAAGCGTTGACTTGGCCGCTTCCC
JMFF044O03+ CCTTGTCTGCCTTGTTCGGCTTGTTGGGATCGTGATGAAGCGTTGACTTGGCCGCTTCCC
rJMFF044O03- CCTTGTCTGCCTTGTTCGGCTTGTTGGGATCGTGATGAAGCGTTGACTTGGCCGCTTCCC
____________________________________________________________
consensus CCTTGTCTGCCTTGTTCGGCTTGTTGGGATCGTGATGAAGCGTTGACTTGGCCGCTTCCC
. : . : . : . : . : . :
JMFN039I12+ CCAGCAGCTTGGCGCTGGACATCAGCTCGGCTTTCGTCGGCGCCGGGTGGTTGTGGTGGC
JMFN006P12+ CCAGCAGCTTGGCGCTGGACATCAGCTCGGCTTTCGTCGGCGCCGGGTGGTTGTGGTGGC
rJMFF003J13- CCAGCAGCTTGGCGCTGGACATCAGCTCGGCTTTCGTCGGCGCCGGGTGGTTGTGGTGGC
JMFF044O03+ CCAGCAGCTTGGCGCTGGACATCAGCTCGGCTTTCGTCGGCGCCGGGTGGTTGTGGTGGC
JMFN037D18+ TGGACATCAGCTCGGCTTTCGTCGGCGCCGGGTGGTTGTGGTGGC
rJMFF044O03- CCAGCAGCTTGGCGCTGGACATCAGCTCGGCTTTCGTCGGCGCCGGGTGGTTGTGGTGGC
____________________________________________________________
consensus CCAGCAGCTTGGCGCTGGACATCAGCTCGGCTTTCGTCGGCGCCGGGTGGTTGTGGTGGC
. : . : . : . : . : . :
JMFN039I12+ TCGATTGGCCCGGCTTGGCATGACTACCTTCATTGTGCCCACGCGAATCCATGTCTGAAT
JMFN006P12+ TCGATTGGCCCGGCTTGGCATGACTACCTTCATTGTGCCCACGCGAATCCATGTCTGAAT
rJMFF003J13- TCGATTGGCCCGGCTTGGCATGACTACCTTCATTGTGCCCACGCGAATCCATGTCTGAAT
JMFF044O03+ TCGATTGGCCCGGCTTGGCATGACTACCTTCATTGTGCCCACGCGAATCCATGTCTGAAT
JMFN037D18+ TCGATTGGCCCGGCTTGGCAGGGGTGCCTTCATTGTGCCCACGGGAATCCATGTCTGAAT
rJMFF044O03- TCGATTGGCCCGGCTTGGCATGACTACCTTCATTGTGCCCACGCGAATCCATGTCTGAAT
____________________________________________________________
consensus TCGATTGGCCCGGCTTGGCATGACTACCTTCATTGTGCCCACGCGAATCCATGTCTGAAT
. : . : . : . : . : . :
JMFN039I12+ ATCTGGAGATTTTGGAAGAAATTAAAAATTGAGTGGA
JMFN006P12+ ATCTGGAGATTTTGGAAGAAATTAAAAATTGAGTGGATCGGAATTA
rJMFF003J13- ATCTGGAGATTTTGGAAGAAATTAAAAATTGAGTGGATCGGAATTATTGANTGTT
JMFF044O03+ ATCTGGAGATTTTGGAAGAAATTAAAAATTGAGTGGATCGGAATTATTGAGTGTT
JMFN037D18+ AT
rJMFF044O03- ATCTGGAGATTTTGGAAGAAATTAAAAATTGAGTGGATCGGAATTATTGAGTGTTGCGAT
____________________________________________________________
consensus ATCTGGAGATTTTGGAAGAAATTAAAAATTGAGTGGATCGGAATTATTGAGTGTTGCGAT