Contig 004117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009E04Sequence544013292 (3)ref|XP_009790956.1|5e-13PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]672004117 (3)ref|XP_009589483.1|6e-45PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]
JMFF044N15Sequence650013292 (3)ref|XP_009790956.1|1e-35PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]567004117 (3)ref|XP_009790956.1|6e-29PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]
JMSF013D13Sequence401013292 (3)745004117 (3)ref|XP_009589483.1|2e-58PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF013D13+ TTCAA
                      ____________________________________________________________
consensus TTCAA
 
. : . : . : . : . : . :
rJMSF013D13+ CGCCCATGAACAGCATCTAGTTCACCATTTCATCGACGGCTGGACAAAGGAACAGTCTAC
                      ____________________________________________________________
consensus CGCCCATGAACAGCATCTAGTTCACCATTTCATCGACGGCTGGACAAAGGAACAGTCTAC
 
. : . : . : . : . : . :
rJMSF013D13+ CTGCGCTCCTGCCTCCTGGCCAACCGAGCTGAAATCAGACTGGACTCAGCTCTCGATGTC
rJMFF009E04+ TCCTGGCCAACCGAGCTGAAATCAGACTGGACTCAGCTCTCGATGTC
                      ____________________________________________________________
consensus CTGCGCTCCTGCCTCCTGGCCAACCGAGCTGAAATCAGACTGGACTCAGCTCTCGATGTC
 
. : . : . : . : . : . :
rJMSF013D13+ AATCCCCATGGCTTCCTCCGATTTCTCATCATCCTCAACCTCTCCCCGGCAAGAGAAACC
rJMFF009E04+ AATCCCCATGGCTTCCTCCGATTTCTCATCATCCTCAACCTCTCCCCGGCAAGAGAAACC
                      ____________________________________________________________
consensus AATCCCCATGGCTTCCTCCGATTTCTCATCATCCTCAACCTCTCCCCGGCAAGAGAAACC
 
. : . : . : . : . : . :
rJMSF013D13+ CACCATTTCACCTCTGAGGCTATCACGCGAGCTCGAACCATTCCAAATGGGATTGGGAGT
rJMFF009E04+ CACCATTTCACCTCTGAGGCTATCACGCGAGCTCGAACCATTCCAAATGGGATTGGGAGT
rJMFF044N15+ CGAACCATTCCAAATGGGATTGGGAGT
                      ____________________________________________________________
consensus CACCATTTCACCTCTGAGGCTATCACGCGAGCTCGAACCATTCCAAATGGGATTGGGAGT
 
. : . : . : . : . : . :
rJMSF013D13+ GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
rJMFF009E04+ GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
rJMFF044N15+ GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
                      ____________________________________________________________
consensus GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
 
. : . : . : . : . : . :
rJMSF013D13+ GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
rJMFF009E04+ GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
rJMFF044N15+ GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
                      ____________________________________________________________
consensus GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
 
. : . : . : . : . : . :
rJMSF013D13+ AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
rJMFF009E04+ AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
rJMFF044N15+ AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
                      ____________________________________________________________
consensus AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
 
. : . : . : . : . : . :
rJMSF013D13+ CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
rJMFF009E04+ CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
rJMFF044N15+ CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
                      ____________________________________________________________
consensus CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
 
. : . : . : . : . : . :
rJMSF013D13+ CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
rJMFF009E04+ CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
rJMFF044N15+ CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
                      ____________________________________________________________
consensus CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
 
. : . : . : . : . : . :
rJMSF013D13+ TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
rJMFF009E04+ TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
rJMFF044N15+ TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
                      ____________________________________________________________
consensus TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
 
. : . : . : . : . : . :
rJMSF013D13+ ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
rJMFF009E04+ ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
rJMFF044N15+ ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
                      ____________________________________________________________
consensus ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
 
. : . : . : . : . : . :
rJMSF013D13+ TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
rJMFF009E04+ TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
rJMFF044N15+ TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
                      ____________________________________________________________
consensus TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
 
. : . : . : . : . : . :
rJMSF013D13+ GTAGCTTAAAATAATGT
rJMFF009E04+ GTAGCTTAAAATAATGT
rJMFF044N15+ GTAGCTTAAAATAATGTTGAATATTCCTATATGTTTTTATCAGAACTCGTATTTGTTTTT
                      ____________________________________________________________
consensus GTAGCTTAAAATAATGTTGAATATTCCTATATGTTTTTATCAGAACTCGTATTTGTTTTT