Contig 004117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009E04Sequence544013292 (3)ref|XP_009790956.1|5e-13PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]672004117 (3)ref|XP_009589483.1|6e-45PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]
JMFF044N15Sequence650013292 (3)ref|XP_009790956.1|1e-35PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]567004117 (3)ref|XP_009790956.1|6e-29PREDICTED: growth-regulating factor 1-like [Nicotiana sylvestris]
JMSF013D13Sequence401013292 (3)745004117 (3)ref|XP_009589483.1|2e-58PREDICTED: growth-regulating factor 1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF013D13+                                                                 TTCAA
                      ____________________________________________________________
consensus                                                                    TTCAA
 
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rJMSF013D13+          CGCCCATGAACAGCATCTAGTTCACCATTTCATCGACGGCTGGACAAAGGAACAGTCTAC
                      ____________________________________________________________
consensus             CGCCCATGAACAGCATCTAGTTCACCATTTCATCGACGGCTGGACAAAGGAACAGTCTAC
 
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rJMSF013D13+          CTGCGCTCCTGCCTCCTGGCCAACCGAGCTGAAATCAGACTGGACTCAGCTCTCGATGTC
rJMFF009E04+                       TCCTGGCCAACCGAGCTGAAATCAGACTGGACTCAGCTCTCGATGTC
                      ____________________________________________________________
consensus             CTGCGCTCCTGCCTCCTGGCCAACCGAGCTGAAATCAGACTGGACTCAGCTCTCGATGTC
 
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rJMSF013D13+          AATCCCCATGGCTTCCTCCGATTTCTCATCATCCTCAACCTCTCCCCGGCAAGAGAAACC
rJMFF009E04+          AATCCCCATGGCTTCCTCCGATTTCTCATCATCCTCAACCTCTCCCCGGCAAGAGAAACC
                      ____________________________________________________________
consensus             AATCCCCATGGCTTCCTCCGATTTCTCATCATCCTCAACCTCTCCCCGGCAAGAGAAACC
 
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rJMSF013D13+          CACCATTTCACCTCTGAGGCTATCACGCGAGCTCGAACCATTCCAAATGGGATTGGGAGT
rJMFF009E04+          CACCATTTCACCTCTGAGGCTATCACGCGAGCTCGAACCATTCCAAATGGGATTGGGAGT
rJMFF044N15+                                           CGAACCATTCCAAATGGGATTGGGAGT
                      ____________________________________________________________
consensus             CACCATTTCACCTCTGAGGCTATCACGCGAGCTCGAACCATTCCAAATGGGATTGGGAGT
 
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rJMSF013D13+          GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
rJMFF009E04+          GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
rJMFF044N15+          GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
                      ____________________________________________________________
consensus             GAGCAATAATGGCATTGCTGACCCAATTCAAAAGCCATCAACTTGGATTCCAGTAACCTG
 
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rJMSF013D13+          GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
rJMFF009E04+          GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
rJMFF044N15+          GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
                      ____________________________________________________________
consensus             GGGGAACTCGATGGGCGGTCCATTAGGCGAGGCCCTAAACAACACGTATGGTAGCGCTGG
 
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rJMSF013D13+          AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
rJMFF009E04+          AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
rJMFF044N15+          AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
                      ____________________________________________________________
consensus             AGCTGGGAAGACCTCTCCTAATCTGAACCTAACCACAGAAATGTGGAGCAGTAGTCCTTA
 
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rJMSF013D13+          CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
rJMFF009E04+          CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
rJMFF044N15+          CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
                      ____________________________________________________________
consensus             CATGGGGTCGTCCCCCACAGGCGTCCTGCAGAAATCGTCCTTCGTCTCGCTCTCAAACAG
 
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rJMSF013D13+          CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
rJMFF009E04+          CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
rJMFF044N15+          CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
                      ____________________________________________________________
consensus             CAGCACCGCAAGTAGCCCCCAAGACGATAACAAGAAGGTTGAGAGTGCTAGAATGTGCAA
 
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rJMSF013D13+          TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
rJMFF009E04+          TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
rJMFF044N15+          TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
                      ____________________________________________________________
consensus             TGACATGGTTGGTTCAAGTGTAGTAAGTTCTTTGTCTATTCCATCACTGTGAAGAAACCA
 
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rJMSF013D13+          ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
rJMFF009E04+          ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
rJMFF044N15+          ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
                      ____________________________________________________________
consensus             ATCTGGAGAGGTTGAAGTTGATAACTAGTAATATCGACATTATTAGTATTCCTGCTGTTT
 
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rJMSF013D13+          TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
rJMFF009E04+          TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
rJMFF044N15+          TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
                      ____________________________________________________________
consensus             TACTACATTAACATTGCTTGCCACTTTGTGTAGTTGTCGTTGTCATCTCATAGTAACGTT
 
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rJMSF013D13+          GTAGCTTAAAATAATGT                                           
rJMFF009E04+          GTAGCTTAAAATAATGT                                           
rJMFF044N15+          GTAGCTTAAAATAATGTTGAATATTCCTATATGTTTTTATCAGAACTCGTATTTGTTTTT
                      ____________________________________________________________
consensus             GTAGCTTAAAATAATGTTGAATATTCCTATATGTTTTTATCAGAACTCGTATTTGTTTTT