Contig 004110:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006G24Sequence607005940 (18)ref|XP_010446199.1|2e-119PREDICTED: actin-85C [Camelina sativa]689004110 (14)gb|AFD62266.1|2e-87actin, partial [Persea americana]
JMFF011L21Sequence491005940 (18)gb|AET50987.1|2e-98actin [Lactuca sativa]684004110 (14)gb|AFD62266.1|1e-88actin, partial [Persea americana]
JMFF014B07Sequence456005940 (18)ref|XP_010485236.1|1e-81PREDICTED: actin-4-like [Camelina sativa]470004110 (14)dbj|BAB60900.1|1e-35actin [Ipomoea nil]
JMFF015P07Sequence571005940 (18)ref|XP_010485236.1|4e-112PREDICTED: actin-4-like [Camelina sativa]527004110 (14)dbj|BAB60900.1|4e-50actin [Ipomoea nil]
JMFF016B24Sequence502005940 (18)ref|XP_010485236.1|5e-92PREDICTED: actin-4-like [Camelina sativa]207004110 (14)dbj|BAB60900.1|5e-33actin [Ipomoea nil]
JMFF016O23Sequence573005940 (18)ref|XP_010485236.1|3e-110PREDICTED: actin-4-like [Camelina sativa]750004110 (14)gb|AFD62266.1|5e-100actin, partial [Persea americana]
JMFF018O22Sequence539005940 (18)ref|XP_010485236.1|4e-102PREDICTED: actin-4-like [Camelina sativa]668004110 (14)gb|AFP43696.1|2e-95actin4, partial [Eriobotrya japonica]
JMFF025G13Sequence556005940 (18)ref|XP_010485236.1|5e-107PREDICTED: actin-4-like [Camelina sativa]677004110 (14)gb|AFD62266.1|1e-87actin, partial [Persea americana]
JMFF031J24Sequence575005940 (18)ref|XP_010485236.1|7e-113PREDICTED: actin-4-like [Camelina sativa]181004110 (14)
JMFF043M04Sequence652005940 (18)ref|XP_010446199.1|1e-129PREDICTED: actin-85C [Camelina sativa]543004110 (14)dbj|BAB60900.1|6e-49actin [Ipomoea nil]
JMSF013K18Sequence529005940 (18)ref|XP_010485236.1|7e-99PREDICTED: actin-4-like [Camelina sativa]645004110 (14)gb|AFD62266.1|3e-85actin, partial [Persea americana]
JMSF016A13Sequence486005940 (18)ref|XP_010485236.1|9e-90PREDICTED: actin-4-like [Camelina sativa]716004110 (14)gb|AFP43696.1|6e-91actin4, partial [Eriobotrya japonica]
JMSF028B11Sequence276004110 (14)gb|AFD62266.1|3e-27actin, partial [Persea americana]
JMSF040N06Sequence681005940 (18)ref|XP_010446199.1|4e-138PREDICTED: actin-85C [Camelina sativa]744004110 (14)ref|XP_011091473.1|1e-82PREDICTED: actin-11 [Sesamum indicum] ref|XP_011091474.1| PREDICTED: actin-11 [S

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N06+                                     GCGGAGCGAGAAATTGTTAGAGATATGAAGGAG
                      ____________________________________________________________
consensus                                        GCGGAGCGAGAAATTGTTAGAGATATGAAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N06+          AAGTTATCCTACATTGCTCTTGACTATGAACAAGAGCTGGAAACATCAAAGACCAGCTCA
rJMSF016A13+                                    TGAACAAGAGCTGGAAACATCAAAGACCAGCTCA
rJMFF018O22+                                              CTGGAAACATCAAAGACCAGCTCA
rJMFF016O23+                                    TGAACAAGAGCTGGAAACATCAAAGACCAGCTCA
                      ____________________________________________________________
consensus             AAGTTATCCTACATTGCTCTTGACTATGAACAAGAGCTGGAAACATCAAAGACCAGCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N06+          GCTGTGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
rJMSF016A13+          GCTGTGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
rJMFF025G13+                          ACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
rJMFF006G24+              TGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
rJMFF018O22+          GCTGTGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
rJMFF011L21+                         TACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
rJMSF013K18+                          ACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
rJMFF016O23+          GCTGTGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
                      ____________________________________________________________
consensus             GCTGTGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTGATTACCATCGGTAATGAGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N06+          TTCCGCTGCCCAGAGGTTNTNTTCCAGCCATCGATCATCGGGATGGAAGCTGCT--CATT
rJMSF016A13+          TTCCGCTGCCCAGAGGTTCTCTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
rJMFF025G13+          TTCCGCTGCCCAGAGGTTNTNTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
rJMFF006G24+          TTCCGCTGCCCAGAGGTTNTNTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
rJMFF018O22+          TTCCGCTGCCCAGAGGTTNTTTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
rJMFF011L21+          TTCCGCTGCCCAGAGGTTNTNTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
rJMSF013K18+          TTCCGCTGCCCAGAGGTTCTNTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
rJMFF016O23+          TTCCGCTGCCCAGAGGTTNTNTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
                      ____________________________________________________________
consensus             TTCCGCTGCCCAGAGGTTCTTTTCCAGCCATCGATCATCGGGATGGAAGCTGCTGGCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N06+          CATGAAACTACTTACAATTCCATCNTGAAGTGTGACGTGGATATTAGGAAGGATCTTTAT
rJMSF016A13+          CATGAAACTACTTACAATTCCATCNTGAAGTGTGACGTGGATATTAGGAAGGATCTTTAT
rJMFF025G13+          CATGAAACTACTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATNTTTAT
rJMFF006G24+          CATGAAACTNCTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATCTTTAT
rJMFF018O22+          CATGAAACTACTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATNTTTAT
rJMFF011L21+          CATGAAACTACTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATNTTTAT
rJMSF013K18+          CATGAAACTACTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATCTTTAT
rJMFF015P07+                                                       AGGAAGGATNTTTAT
rJMFF016O23+          CATGAAACTACTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATCTTTAT
rJMFF043M04+                                                                  TTAT
                      ____________________________________________________________
consensus             CATGAAACTACTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGATCTTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B11+                                           TTCGGGGGCNNTGCTGATAGGNTGAGC
rJMSF040N06+          GGAAACNTTGTCCTCAGTGGTGGTACCNCTATGTTCGGGGGCNTTGCTGATAGGATGAGC
rJMSF016A13+          GGAAACNTTGTCCTCAGTGGNGGTACCNCTATGTTCGGGGGCNTTGCTGATAGGATGAGC
rJMFF025G13+          GGAAACATTGTCCTCAGTGGTGGTACCACTATGTTCGGGGGCATTGCTGATAGGATGAGC
rJMFF006G24+          GGAAACATTGTCCTCAGTGGTGGTACCNCTATGTTNGGGGGCATTGCTGATAGGATGAGC
rJMFF018O22+          GGAAACATTGTCCTCAGTGGTGGTACCNCTATGTTNGGGGGCATTGCTGATAGGATGAGC
rJMFF016B24+                                              GGGGGCATTGCTGATNGGATGAGC
rJMFF011L21+          GGAAACATTGTCCTCAGTGGTGGTACCACTATGTTCGGGGGCATTGCTGATAGGATGAGC
rJMSF013K18+          GGAAACATTGTCCTCAGTGGNGGTACCNCTATGTTCGGGGGCNTTGCTGATAGGATGAGC
rJMFF014B07+                                                    ATTGCTGATAGGATGAGC
rJMFF015P07+          GGAAACATTGTCCTCAGTGGTGGTACCACTATGTTCGGGGGCATTGCTGATAGGATGAGC
rJMFF016O23+          GGAAACATTGTCCTCAGTGGTGGTACCNCTATGTTCGGGGGCATTGCTGATAGGATGAGC
rJMFF043M04+          GGAAACATNGTCCTCAGTGGTGGTACCACTATGTTCGGGGGCATTGCTGATAGGATGAGC
                      ____________________________________________________________
consensus             GGAAACATTGTCCTCAGTGGTGGTACCACTATGTTCGGGGGCATTGCTGATAGGATGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B11+          AAGGAGATCNCNGCTTTGGCTCCGAGTAGCNNGAAGATAAAGGNTGTTGCCCCNCCTGAG
rJMSF040N06+          AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMSF016A13+          AAGGAGATCACNGCTTTGGCTCCGAGTAGCNTGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMFF025G13+          AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMFF006G24+          AAGGAGATCNCAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCNCCTGAG
rJMFF018O22+          AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMFF016B24+          AAGGAGATCNCAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMFF011L21+          AAGGAGATCNCAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMSF013K18+          AAGGAGATCNCAGCTTTGGCTCCGAGTAGCNTGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMFF014B07+          AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTNCCCCNCCTGAG
rJMFF015P07+          AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMFF016O23+          AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
rJMFF043M04+          AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
                      ____________________________________________________________
consensus             AAGGAGATCACAGCTTTGGCTCCGAGTAGCATGAAGATAAAGGTTGTTGCCCCGCCTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B11+          AGGAAGTACNGTGTGTGGATTGGAGGATNTATTTTGGCCTCCCTGAGCNCNTTCCNACNG
rJMSF040N06+          AGGAAGTACAGTGTGTGGATTGGAGGATCTATTTTGGCCTCCCTGAGCACATTCCAACAG
rJMSF016A13+          AGGAAGTACNGTGTGTGGATTGGAGGATCTATTTTGGCCTCCCTGAGCACATTCCAACNG
rJMFF025G13+          AGGAAGTACAGTGTGTGGATTGGAGGATNTATTTTGGCCTCCCTGAGCACATTCCAACAG
rJMFF006G24+          AGGAAGTNCAGTGTGTGGATTGGAGGATTTATTTTGGCCTCCCTGAGCACATTCCAACAG
rJMFF018O22+          AGGAAGTACAGTGTGTGGATTGGAGGATTTATTTTGGCCTCCCTGAGCACATTCCAACAG
rJMFF016B24+          AGGAANTACAGTGTGTGGATTGGAGGATNTNTTTTGGCCTCCCTGAGCACATTCCAACAG
rJMFF011L21+          AGGAAGTACAGTGTGTGGATTGGAGGATNTATTTTGGCCTCCCTGAGCACATTCCAACAG
rJMSF013K18+          AGGAAGTACNGTGTGTGGATTGGAGGATCTATTTTGGCCTCCCTGAGCNCATTCCAACAG
rJMFF014B07+          AGGAAGTNCAGTGTGTGGATTGGAGGATNTATTTTGGCCTCCCTGAGCNCATTCCAACAG
rJMFF015P07+          AGGAAGTNCAGTGTGTGGATTGGAGGATTTATTTTGGCCTCCCTGAGCACATTCCAACAG
rJMFF016O23+          AGGAAGTACAGTGTGTGGATTGGAGGATNTATTTTGGCCTCCCTGAGCACATTCCAACAG
rJMFF043M04+          AGGAAGTACAGTGTGTGGATTGGAGGATCTATTTTGGCCTCCCTGAGCACATTCCAACAG
                      ____________________________________________________________
consensus             AGGAAGTACAGTGTGTGGATTGGAGGATCTATTTTGGCCTCCCTGAGCACATTCCAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B11+          ANGTGGATAGCAAAGGCNGAGTNTGATGAATCNGGNCCCTCGATTGTTCATNGGAAANGC
rJMSF040N06+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCNGGACCCTCGATTGTTCATAGGAAATGC
rJMSF016A13+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCNGGACCCTCGATTGTTC--NGGAAATGC
rJMFF025G13+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
rJMFF006G24+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
rJMFF018O22+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
rJMFF016B24+          ATNTGGATAGCNAAGGCAGAGTATGATGAATCAGGACCCTNGATTGTTCATAGGAAA   
rJMFF011L21+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
rJMSF013K18+          ATGTGGATAGCAAAGGCNGAGTATGATGAATCNGGACCCTCGATTGTTCATAGGAAATGC
rJMFF014B07+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
rJMFF015P07+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
rJMFF016O23+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
rJMFF043M04+          ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
                      ____________________________________________________________
consensus             ATGTGGATAGCAAAGGCAGAGTATGATGAATCAGGACCCTCGATTGTTCATAGGAAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B11+          TTNTAAATGCTGCNTGCTGGGAAAGAGACNTNNGGAGAGATTTATACNAGCTGTGCTATG
rJMSF040N06+          TTNTAAATGCTGCATGCTGGGAAAGAGACATCTGGAGAGATTTATACNAGCTGTGCTATG
rJMSF016A13+          TTNTAAATGCTGCNTGCTGGGAAAGAGACATCTGGAGAGATTTATACNAGCTGTGCTATG
rJMFF025G13+          TTNTAAATGCTGCATGCTGGGAAAGAGACATNTGGAGAGATTTATACAAGCTGTGCTATG
rJMFF006G24+          TTTTAAATGCTGCATGCTGGGAAAGAGACATTTGGAGAGATTTATACAAGCTGTGCTATG
rJMFF018O22+          TTTTAAATGCTGCATGCTGGGAAAGAGACATNTGGAGAGATTTATACAAGCTGTGCTATG
rJMFF011L21+          TTTTAAATGCTGCATGCTGGG-AAGAGACATNTGGAGAGATTTATACAAGCTGTGCTATG
rJMSF013K18+          TTNTAAATGCTGCNTGCTGGGAAAGAGACATCTGGAGAGATTTATACNAGCTGTGCTATG
rJMFF014B07+          TTTTAAATGCTGCATGCTGGGAAAGAGACATNTGGAGAGATTTATNCAAGCTGTGCTATG
rJMFF015P07+          TTTTAAATGCTGCATGCTGGGAAAGAGACATNTGGAGAGATTTATACAAGCTGTGCTATG
rJMFF016O23+          TTTTAAATGCTGCATGCTGGGAAAGAGACATNTGGAGAGATTTATACAAGCTGTGCTATG
rJMFF043M04+          TTCTAAATGCTGCATGCTGGGAAAGAGACATCTGGAGAGATTTATACAAGCTGTGCTATG
                      ____________________________________________________________
consensus             TTTTAAATGCTGCATGCTGGGAAAGAGACATCTGGAGAGATTTATACAAGCTGTGCTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B11+          AAAAC                                                       
rJMSF040N06+          AAAACAGCTTCTCCTCAGNTGCTATGCTGCTTCCTTCTCATTTGTTATTTTACTTATTGT
rJMSF016A13+          AAAACAGCTTCTCCTCAGNTGCTATGCTGCTTCCTTCTCATTTGTTATTTTACNTATTGT
rJMFF025G13+          AAAACAGCTTNTCCTCAGTTGCTATGCTGCTTCCTTNTCATTTGTTATTTTACTTATTGT
rJMFF006G24+          AAAACAGCTTNTCCTCAGTTGCTATGCTGCTTCCTTNTCATTTGTTATTTTACTTATTGT
rJMFF018O22+          AAAACAGCTTCTCCTCAGTTGCTATGCTGCTTCCTTNTCATTTGTTATTTTACTTATTGT
rJMFF011L21+          AAAACAGCTTNTCCTCAGTTGNTATGCTGCTTCCTTNTCATTTGTTATTTTACTTATTGT
rJMSF013K18+          AAAACAGCTTCTCCTCAGNTGCTATGCTGCTTCCTTCTCNTTTGTTATTTTACTTATTGT
rJMFF014B07+          AAAACAGCTTCTCCTCAGTTGCTATGCTGCTTCCTTCTCATTTGTTATTTTACTTATTGT
rJMFF015P07+          AAAACAGCTTNTCCTCAGTTGCTATGCTGCTTCCTTCTCATTTGTTATTTTACTTATTGT
rJMFF031J24+                                     TGCTTCCTTNTCATTCGTTATTTTNNTTANNGT
rJMFF016O23+          AAAACAGCTTNTCCTCAGTTGCTATGCTGCTTCCTTNTCATTTGTTATTTTACTTATTGT
rJMFF043M04+          AAAACAGCTTCTCCTCAGTTGCTATGCTGCTTCCTTCTCATCTGTTATTTTACTTATTGT
                      ____________________________________________________________
consensus             AAAACAGCTTCTCCTCAGTTGCTATGCTGCTTCCTTCTCATTTGTTATTTTACTTATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N06+          TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCNGTGGAGACACAAAACNGG
rJMSF016A13+          TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCNGTGGAGACNC-AAACNGG
rJMFF025G13+          TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
rJMFF006G24+          TTTCTTTANGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
rJMFF018O22+          TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
rJMFF011L21+          TTTCTTTANGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
rJMSF013K18+          TTTCTTTATGTTCNTTCTTTCGAGTTTTTCAAGATTTGGCCNGNGGAGACNC--AACNGG
rJMFF014B07+          TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
rJMFF015P07+          TTTCTTTANGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
rJMFF031J24+          TTTCNTTATGNTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGNGGAGACAC-AAACAGG
rJMFF016O23+          TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
rJMFF043M04+          TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
                      ____________________________________________________________
consensus             TTTCTTTATGTTCATTCTTTCGAGTTTTTCAAGATTTGGCCAGTGGAGACAC-AAACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N06+          ATCTTGGCNTTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTT       
rJMSF016A13+          ATCTTGGCNTTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMFF025G13+          ATCTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMFF006G24+          ATNTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMFF018O22+          ATCTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTG               
rJMFF011L21+          ATCTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMSF013K18+          ATCTTGGCNTTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMFF014B07+          ATNTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMFF015P07+          ATCTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMFF031J24+          ATNTTGGCANTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTNGTCTACTTTTATGTTA
rJMFF016O23+          ATCTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
rJMFF043M04+          ATCTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
                      ____________________________________________________________
consensus             ATCTTGGCATTTTTTTTTTGTTAGTATTGCTATTAAGAAGATTTGTCTACTTTTATGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016A13+          TTTGGATTTCTGATAAATGAACAT                                    
rJMFF025G13+          TTTGGATTTCTGATAAATGAACATTCTCACTACT                          
rJMFF006G24+          TTTGGATTTCTGATAAATGAACATTCTCACTACT                          
rJMFF011L21+          TTTGGATTTCTGATAAATGAACATTCTCACTACT                          
rJMSF013K18+          TTT                                                         
rJMFF014B07+          TTTGGATTTCTGATAAATGAACATTCTCACTAC                           
rJMFF015P07+          TTTGGATTTCTGATAAATGAACATTCTCACTAC                           
rJMFF031J24+          TTTGGATTTCTGATAAATGAACATTCTCA                               
rJMFF016O23+          TTTGGATTTCTGATAAATGAACATTCTCACTACTGTCAACATGGAGAATTGTTATAT   
rJMFF043M04+          TTTGGATTTCTGATAAATGAACATTCTCACTACTGTCAACATGGAGAATTGTTATATGTT
                      ____________________________________________________________
consensus             TTTGGATTTCTGATAAATGAACATTCTCACTACTGTCAACATGGAGAATTGTTATATGTT