Contig 004106:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002M20Sequence388008805 (6)730004106 (5)ref|XP_009615190.1|8e-88PREDICTED: ankyrin repeat protein SKIP35 [Nicotiana tomentosiformis] ref|XP_0096
JMFF025K03Sequence566008805 (6)760004106 (5)ref|XP_009615190.1|4e-89PREDICTED: ankyrin repeat protein SKIP35 [Nicotiana tomentosiformis] ref|XP_0096
JMFF028A05Sequence503008805 (6)687004106 (5)emb|CDP19148.1|2e-70unnamed protein product [Coffea canephora]
JMFF043I05Sequence637008805 (6)633004106 (5)emb|CDP19148.1|4e-49unnamed protein product [Coffea canephora]
JMSF001P14Sequence276008805 (6)678004106 (5)ref|XP_009615190.1|7e-79PREDICTED: ankyrin repeat protein SKIP35 [Nicotiana tomentosiformis] ref|XP_0096

Alignment

This contig is upended


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rJMFF002M20+                                         TGAGCATTGAGATTCTCAAGGCGGCTGGT
rJMFF025K03+                               CTTGCAGCCNTGAGCATTGAGATTCTCAAGGCGGCTGGT
                      ____________________________________________________________
consensus                                  CTTGCAGCCNTGAGCATTGAGATTCTCAAGGCGGCTGGT
 
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rJMFF002M20+          GAGCGAAGTAGTGGGTCTCTTGATGGGGTAGCCTTTCTTCTTAGTTCAGACTTCC-TTGG
rJMSF001P14+                                ATGGGGTAGCCTTTCTTCTTAGTTCAGACTTCC-TTGG
rJMFF028A05+                                ATGGGGTAGCCTTTCTTCTTAGTTCAGACTTCCTTTGG
rJMFF025K03+          GAGCGAAGTAGTGGGTCTCTTGATGGGGTAGCCTTTCTTCTTAGTTCAGACTTCC-TTGG
                      ____________________________________________________________
consensus             GAGCGAAGTAGTGGGTCTCTTGATGGGGTAGCCTTTCTTCTTAGTTCAGACTTCC-TTGG
 
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rJMFF002M20+          AGATCCTGCTGCTACTTATGCTGTTGCCGACAGCATAGCTAGGTCGGAGGACGAGGCTGT
rJMSF001P14+          AGATCCTGCTGCTACTTATGCTGTTGCCGACAGCATAGCTAGGTCGGAGGACGAGGCTGT
rJMFF028A05+          AGATCCTGCTGCTACTTATGCTGTTGCCGACAGCATAGCTAGGTCGGAGGACGAGGCTGT
rJMFF025K03+          AGATCCTGCTGCTACTTATGCTGTTGCCGACAGCATAGCTAGGTCGGAGGACGAGGCTGT
                      ____________________________________________________________
consensus             AGATCCTGCTGCTACTTATGCTGTTGCCGACAGCATAGCTAGGTCGGAGGACGAGGCTGT
 
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rJMFF002M20+          AGCTCCGGAGCTTAGGTCTTTTCTTCACGAGCATTGGTCAGAAGCAGCAGCAATAGAAGG
rJMSF001P14+          AGCTCCGGAGCTTAGGTCTTTTCTTCACGAGCATTGGTCAGAAGCAGCAGCAATAGAAGG
rJMFF028A05+          AGCTCCGGAGCTTAGGTCTTTTCTTCACGAGCATTGGTCAGAAGCAGCAGCAATAGAAGG
rJMFF025K03+          AGCTCCGGAGCTTAGGTCTTTTCTTCACGAGCATTGGTCAGAAGCAGCAGCAATAGAAGG
rJMFF043I05+                                     CGAGCATTGGTCAGAAGCAGCAGCAATAGAAGG
                      ____________________________________________________________
consensus             AGCTCCGGAGCTTAGGTCTTTTCTTCACGAGCATTGGTCAGAAGCAGCAGCAATAGAAGG
 
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rJMFF002M20+          AAAGAGGCAAGGTGAGGAGCATTACCTGAATCTGGTGCGGATTATGAACTTGGGTGAGTC
rJMSF001P14+          AAAGAGGCAAGGTGAGGAGCATTACCTGAATCTGGTGCGGATTATGAACTTGGGTGAGTC
rJMFF028A05+          AAAGAGGCAAGGTGAGGAGCATTACCTGAATCTGGTGCGGATTATGAACTTGGGTGAGTC
rJMFF025K03+          AAAGAGGCAAGGTGAGGAGCATTACCTGAATCTGGTGCGGATTATGAACTTGGGTGAGTC
rJMFF043I05+          AAAGAGGCAAGGTGAGGAGCATTACCTGAATCTGGTGCGGATTATGAACTTGGGTGAGTC
                      ____________________________________________________________
consensus             AAAGAGGCAAGGTGAGGAGCATTACCTGAATCTGGTGCGGATTATGAACTTGGGTGAGTC
 
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rJMFF002M20+          TCCAATCTGTTTGAGGGATCTTCCATCTCCACTCAGGATTGCAATAGCATACCTGCCTCT
rJMSF001P14+          TCCAATCTGTTTGAGGGATCTTCCATCTCCACTCAGGATTGCAATAGCATACCTGCCTCT
rJMFF028A05+          TCCAATCTGTTTGAGGGATCTTCCATCTCCACTCAGGATTGCAATAGCATACCTGCCTCT
rJMFF025K03+          TCCAATCTGTTTGAGGGATCTTCCATCTCCACTCAGGATTGCAATAGCATACCTGCCTCT
rJMFF043I05+          TCCAATCTGTTTGAGGGATCTTCCATCTCCACTCAGGATTGCAATAGCATACCTGCCTCT
                      ____________________________________________________________
consensus             TCCAATCTGTTTGAGGGATCTTCCATCTCCACTCAGGATTGCAATAGCATACCTGCCTCT
 
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rJMFF002M20+          GTATAGGGAGTGTGTCAAGGCAGGAGGTTGCTTGCTATCACAGAGGCTTAGAGGACAGCT
rJMSF001P14+          GTATAGGGAGTGTGTCAAGGCAGGAGGTTGCTTGCTATCACAGAGGCTTAGAGGACAGCT
rJMFF028A05+          GTATAGGGAGTGTGTCAAGGCAGGAGGTTGCTTGCTATCACAGAGGCTTAGAGGACAGCT
rJMFF025K03+          GTATAGGGAGTGTGTCAAGGCAGGAGGTTGCTTGCTATCACAGAGGCTTAGAGGACAGCT
rJMFF043I05+          GTATAGGGAGTGTGTCAAGGCAGGAGGTTGCTTGCTATCACAGAGGCTTAGAGGACAGCT
                      ____________________________________________________________
consensus             GTATAGGGAGTGTGTCAAGGCAGGAGGTTGCTTGCTATCACAGAGGCTTAGAGGACAGCT
 
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rJMFF002M20+          TGTGGAGGCGGCCAAAAGGCTGAGTGGAGTCACGCTTGAAGATGCTAGGCAAGGAAGAGA
rJMSF001P14+          TGTGGAGGCGGCCAAAAGGCTGAGTGGAGTCACGCTTGAAGATGCTAGGCAAGGAAGAGA
rJMFF028A05+          TGTGGAGGCGGCCAAAAGGCTGAGTGGAGTCACGCTTGAAGATGCTAGGCAAGGAAGAGA
rJMFF025K03+          TGTGGAGGCGGCCAAAAGGCTGAGTGGAGTCACGCTTGAAGATGCTAGGCAAGGAAGAGA
rJMFF043I05+          TGTGGAGGCGGCCAAAAGGCTGAGTGGAGTCACGCTTGAAGATGCTAGGCAAGGAAGAGA
                      ____________________________________________________________
consensus             TGTGGAGGCGGCCAAAAGGCTGAGTGGAGTCACGCTTGAAGATGCTAGGCAAGGAAGAGA
 
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rJMFF002M20+          GTTACTGGGCATTTTAGAGCATAATCTTCCTACATTTTTGCTAAATGCATAAATTAAATT
rJMSF001P14+          GTTACTGGGCATTTTAGAGCATAATCTTCCTACATTTTTGCTAAATGCATAAATTAAATT
rJMFF028A05+          GTTACTGGGCATTTTAGAGCATAATCTTCCTACATTTTTGCTAAATGCATAAATTAAATT
rJMFF025K03+          GTTACTGGGCATTTTAGAGCATAATCTTCCTACATTTTTGCTAAATGCATAAATTAAATT
rJMFF043I05+          GTTACTGGGCATTTTAGAGCATAATCTTCCTACATTTTTGCTAAATGCATAAATTAAATT
                      ____________________________________________________________
consensus             GTTACTGGGCATTTTAGAGCATAATCTTCCTACATTTTTGCTAAATGCATAAATTAAATT
 
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rJMFF002M20+          AATTACACCCCATACCCATACCATGCATGGAGTAGTAGTAAGTACAAGTTGTATTTGAGG
rJMSF001P14+          AATTACACCCCATACCCATACCATGCATGGAGTAGTAGTAAGTACAAGTTGTATTTGAGG
rJMFF028A05+          AATTACACCCCATACCCATACCATGCATGGAGTAGTAGTAAGTACAAGTTGTATTTGAGG
rJMFF025K03+          AATTACACCCCATACCCATACCATGCATGGAGTAGTAGTAAGTACAAGTTGTATTTGAGG
rJMFF043I05+          AATTACACCCCATACCCATACCATGCATGGAGTAGTAGTAAGTACAAGTTGTATTTGAGG
                      ____________________________________________________________
consensus             AATTACACCCCATACCCATACCATGCATGGAGTAGTAGTAAGTACAAGTTGTATTTGAGG
 
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rJMFF002M20+          TTCAGGAATTTTATTTTAATAATACAATAGTTAGTAGTTGGGTTCAATGGTGAGAAAGCT
rJMSF001P14+          TTCAGGAATTTTATTTTAATAATACAATAGTTAGTAGTTGGGTTCAATGGTGAGAAAGCT
rJMFF028A05+          TTCAGGAATTTTATTTTAATAATACAATAGTTAGTAGTTGGGTTCAATGGTGAGAAAGCT
rJMFF025K03+          TTCAGGAATTTTATTTTAATAATACAATAGTTAGTAGTTGGGTTCAATGGTGAGAAAGCT
rJMFF043I05+          TTCAGGAATTTTATTTTAATAATACAATAGTTAGTAGTTGGGTTCAATGGTGAGAAAGCT
                      ____________________________________________________________
consensus             TTCAGGAATTTTATTTTAATAATACAATAGTTAGTAGTTGGGTTCAATGGTGAGAAAGCT
 
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rJMFF002M20+          GCTGGGTGGAGACTATCATGATGTACAGTAGTAGAATGTTTTCTTAGAGATAAAACCACC
rJMSF001P14+          GCTGGGTGGAGACTATCATGATGTACAGTAGTAGAATGTTTTCTTAGAGATAAAACCACC
rJMFF028A05+          GCTGGGTGGAGACTATCATGATGTACAGTAGTAGAATGTTTTCTTAGAGATAAAACCACC
rJMFF025K03+          GCTGGGTGGAGACTATCATGATGTACAGTAGTAGAATGTTTTCTTAGAGATAAAACCACC
rJMFF043I05+          GCTGGGTGGAGACTATCATGATGTACAGTAGTAGAATGTTTTCTTAGAGATAAAACCACC
                      ____________________________________________________________
consensus             GCTGGGTGGAGACTATCATGATGTACAGTAGTAGAATGTTTTCTTAGAGATAAAACCACC
 
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rJMFF002M20+          CGCTCGGAGTTGAGTTCTGTAAGTGGAAATTGAACACAAGTA                  
rJMSF001P14+          CGCTCGGAGTTGAGTTCTGTAAGTGGAAAT                              
rJMFF028A05+          CGCTCGGAGTTGAGTTCTGTAAGTGGAAATTGAACACAAGTA                  
rJMFF025K03+          CGCTCGGAGTTGAGTTCTGTAAGTGGAAATTGAACACAAGTATGAATATGAATATGAATA
rJMFF043I05+          CGCTCGGAGTTGAGTTCTGTAAGTGGAAATTGAACACAAGTATGAATATGAATATGAATA
                      ____________________________________________________________
consensus             CGCTCGGAGTTGAGTTCTGTAAGTGGAAATTGAACACAAGTATGAATATGAATATGAATA
 
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rJMFF025K03+          TA                                                          
rJMFF043I05+          TAATAATTAATTAATTTTCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TAATAATTAATTAATTTTCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG