Contig 004104:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF016M05-                            GCAATCGCACAATCCCCCGGTGAACGTCGGACCTCAGGCGACA
                      ____________________________________________________________
consensus                              GCAATCGCACAATCCCCCGGTGAACGTCGGACCTCAGGCGACA
 
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JMFF016M05-           GGTAAACCTCACCAGACACTAATCAAATTCCAGCTTCGACGCTTTACCCATTGTAGACTC
                      ____________________________________________________________
consensus             GGTAAACCTCACCAGACACTAATCAAATTCCAGCTTCGACGCTTTACCCATTGTAGACTC
 
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JMFF016M05-           GTAGTAGACATTCAAGTTTTTCAGTAACCGACATAATCGACCGAAACCAATGGTCCGCTA
                      ____________________________________________________________
consensus             GTAGTAGACATTCAAGTTTTTCAGTAACCGACATAATCGACCGAAACCAATGGTCCGCTA
 
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JMSF010E07-                                             AACTCTTCAGCATTGGCAGCTAAGCT
JMFF016M05-           TATCATTTACTTTGGTCGGTTATGAAGGTTCAAAAACTCTTCAGCATTGGCGGCTAAGCT
JMFF042O09-                                             AACTCTTCAGCATTGGCGGCTAAGCT
                      ____________________________________________________________
consensus             TATCATTTACTTTGGTCGGTTATGAAGGTTCAAAAACTCTTCAGCATTGGCGGCTAAGCT
 
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JMSF010E07-           ATCGTCACTTTTACTCCGAAGAATTTCACCTTTGAATCGAAACTGTTTCT---------G
JMFF016M05-           ATCGTCACTTTTACTCTGAAGAATCTCACCTTTGAATCGAAACTGTTTCTGCCGCCGGAG
JMFF042O09-           ATCGTCACTTTTACTCTGAAGAATCTCACCTTTGAATCGAAACTGTTTCTGCCGCCGGAG
rJMFF016M05+                                                                     G
                      ____________________________________________________________
consensus             ATCGTCACTTTTACTCTGAAGAATCTCACCTTTGAATCGAAACTGTTTCTGCCGCCGGAG
 
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JMSF010E07-           CCGCCATGAGTTCCGACCCTGAAAATGATCCCCAAAACGCGTCGTCCTCGAGCTCCCAAG
JMFF016M05-           CCGCCATGAGTGCCGACAGTGAAAATGGTCCCCAAAATGTGTCGTCCTCGAGCTCCCAAG
JMFF042O09-           CCGCCATGAGTGCCGACAGTGAAAATGGTCCCCAAAATGTGTCGTCCTCGAGCTCCCAAG
rJMFF016M05+          CCGCCATGAGTGCCGACAGTGAAAATGGTCCCCAAAATGTGTCGTCCTCGAGCTCCCAAG
                      ____________________________________________________________
consensus             CCGCCATGAGTGCCGACAGTGAAAATGGTCCCCAAAATGTGTCGTCCTCGAGCTCCCAAG
 
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JMSF010E07-           AAGCCGATAAGCCACCGATCGAACCCATTCGCC                           
JMFF016M05-           AAGCCGATAAGCCACCGATCGAACCCATTCGCCTCCCAACAGTCGAGGAAATTCGAGGCC
JMFF042O09-           AAGCCGATAAGCCACCGATCGAACCCATTCGCCTCCCAACAGTCGAGGAAATTCGAGGCC
rJMFF016M05+          AAGCCGATAAGCCACCGATCGAACCCATTCGCCTCCCAACAGTCGAGGAAATTCGAGGCC
                      ____________________________________________________________
consensus             AAGCCGATAAGCCACCGATCGAACCCATTCGCCTCCCAACAGTCGAGGAAATTCGAGGCC
 
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JMFF016M05-           AGGACATTTGGAACAACTGCGCCGTTCGCAGCGTCTCCAGCGGCGTCATGGGAGGGGGAC
JMFF042O09-           AGGACATTTGGAACAACTGCGCCGTTCGCAGCGTCTCCAGCGGCGTCATGGGAGGGGGAC
rJMFF016M05+          AGGACATTTGGAACAACTGCGCCGTTNCGAGCGTCTCCAGCGGCGTCATGGGAGGGGGAC
                      ____________________________________________________________
consensus             AGGACATTTGGAACAACTGCGCCGTTCGCAGCGTCTCCAGCGGCGTCATGGGAGGGGGAC
 
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JMFF016M05-           TAGGATTGTTCATGGGTCTGTTCTTAGGTGCACTGGACAATCCTATAATGCAAGATGAAA
JMFF042O09-           TAGGATTGTTCATGGGTCTGTTCTTAGGTGCACTGGACAATCCTATAATGCAAGATGAAA
rJMFF016M05+          TAGGATTGTTCATGGGTCTGTTCTTAGGTGCACTGGACAATCCTATAATGCAAGATGAAA
                      ____________________________________________________________
consensus             TAGGATTGTTCATGGGTCTGTTCTTAGGTGCACTGGACAATCCTATAATGCAAGATGAAA
 
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JMFF016M05-           TGACTACCAGGCAACAAATTGTGTTCCAAGCAAAGCAGAT                    
JMFF042O09-           TGACTACCAGGCAACAAATTGTGTTCCAAGCAAAGCAGATGGGTCGGAGGAGTTGGAGCT
rJMFF016M05+          TGACTACCAGGCAACAAATTGTGTTCCAAGCAAAGCAGATGGGTCGGAGGAGTTGGAGCT
                      ____________________________________________________________
consensus             TGACTACCAGGCAACAAATTGTGTTCCAAGCAAAGCAGATGGGTCGGAGGAGTTGGAGCT
 
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JMFF042O09-           CCTGCAAGACCTTTGCGGTTATGGGTTTCATTTTCTCAGCTGCTGAATGTGTTATTGAGA
rJMFF016M05+          CCTGCAAGACCTTTGCGGTTATGGGTTTCATTTTCTCAGCTGCTGAATGTGTTATTGAGA
rJMSF007I08+                                 GGTTTCATTTTCTCAGCTGCTGAATGTGNTATTGAGA
                      ____________________________________________________________
consensus             CCTGCAAGACCTTTGCGGTTATGGGTTTCATTTTCTCAGCTGCTGAATGTGTTATTGAGA
 
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JMFF042O09-           AGGCACGAGCGAAGCATGATACTACAAACACAGCAGTTGCTGGATGTGTAACAGGAGGCA
rJMFF016M05+          AGGCACGAGCGAAGCATGATACTACAAACACAGCAGTTGCTGGATGTGTAACAGGAGGCA
rJMSF027M13+                                                         GTAACAGGAGGCA
rJMSF007I08+          AGGCACGAGCGAAGCATGATACTACAAACACAGCAGTTGCTGGATGTGTAACAGGAGGCA
                      ____________________________________________________________
consensus             AGGCACGAGCGAAGCATGATACTACAAACACAGCAGTTGCTGGATGTGTAACAGGAGGCA
 
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JMFF042O09-           CACTATCAGCCAGAGGAGGTCCAAAGGCCGCGTGTGCTGGTTGTGCTGGCTTTGCT    
rJMFF016M05+          CACTATCAGCCAGAGGAGGTCCAAAGGCCGCGTGTGCTGGTTGTGCTGGCTTTGCTGCAT
rJMSF027M13+          CACTATCAGCCAGAGGAGGTCCAAAGGCCGCGTGTGCTGGTTGTGCTGGCTTTGCTGCAT
rJMSF007I08+          CACTATCAGCCAGAGGAGGTCCAAAGGCCGCGTGTGCTGGTTGTGCTGGCTTTGCTGCAT
                      ____________________________________________________________
consensus             CACTATCAGCCAGAGGAGGTCCAAAGGCCGCGTGTGCTGGTTGTGCTGGCTTTGCTGCAT
 
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rJMFF016M05+          TCTCAGTCGTGATAGAGAAGTTCTTAGAAAGGTACCATTAACAAGTTGCAGATTCATACA
rJMSF027M13+          TCTCAGTCGTGATAGAGAAGTTCTTAGAAAGGTACCATTANCAAGTTGCAGATTCATACA
rJMSF007I08+          TCTCAGTCGTGATAGAGAAGTTCTTAGAAAGGTACCATTAACAAGTTGCAGATTCATACA
                      ____________________________________________________________
consensus             TCTCAGTCGTGATAGAGAAGTTCTTAGAAAGGTACCATTAACAAGTTGCAGATTCATACA
 
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rJMFF016M05+          AGGACACAGAGAGTTGTAGCCAAGCGAGATATCGTGACTAGCATCATTCTTTTTGCCCCA
rJMSF027M13+          AGGACACAGAGAGTTGTAGCCAAGCGAGATATCGTGACTAGCATCATTCTTTTNGCCCCA
rJMSF007I08+          AGGACACAGAGAGTTGTAGCCAAGCGAGATATCGTGACTAGCATCATTCTTTTTGCCCCA
                      ____________________________________________________________
consensus             AGGACACAGAGAGTTGTAGCCAAGCGAGATATCGTGACTAGCATCATTCTTTTTGCCCCA
 
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rJMFF016M05+          ACATTATCGTTGATTAATTTTTCTCTCCTTAGAAAAGGGACCTCATTGAAAGTGTTATGT
rJMSF027M13+          ACATTATCGTTGATTAATTTTTCTCTCCTTAGAAAAGGGACCTCATTGAAAGTGTTATGT
rJMSF007I08+          ACATTATCGTTGATTAATTTTTCTCTCCTTAGAAAAGGGACCTCATTGAAAGTGTTATGT
                      ____________________________________________________________
consensus             ACATTATCGTTGATTAATTTTTCTCTCCTTAGAAAAGGGACCTCATTGAAAGTGTTATGT
 
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rJMFF016M05+          ACCTTAAAGATCTCGTTTTGACTCTACCATTAGCACAACTTCTCCCTGGTCTGGGGAAAG
rJMSF027M13+          ACCTTAAAGATCTCGTTTTGACTTTACCANTAGCACAACTTCTCCCTGGTCTGGGGAAAG
rJMSF007I08+          ACCTTAAAGATCTCGTTTTGACTCTACCATTAGCACAACTTCTCCCTGGTCTGGGGAAAG
                      ____________________________________________________________
consensus             ACCTTAAAGATCTCGTTTTGACTCTACCATTAGCACAACTTCTCCCTGGTCTGGGGAAAG
 
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rJMFF016M05+          T                                                           
rJMSF027M13+          TTGAGGTGATCAAATAAAGCTTNGATAAACCAGTTT                        
rJMSF007I08+          TTGAGGTGATCAAATAAAGCTTTGATAAACCAGTTTGGTTGGCGTGAGTGGCTGTGCACT
rJMFF042O09+                                       CCAGTTTGGTTGGCGTGAGTGGCTGTGCACT
                      ____________________________________________________________
consensus             TTGAGGTGATCAAATAAAGCTTTGATAAACCAGTTTGGTTGGCGTGAGTGGCTGTGCACT
 
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rJMSF007I08+          CTCGTCCCTTAAGAGAGGTCGGGAGTTCGAATTCCTTCTTGTATGAAAAAACCAATCTGG
rJMFF042O09+          CTCGTCCCTTAAGAGAGGTCGGGAGTTCGAATTCCTTCTTGTATGAAAAAACCAATCTGG
                      ____________________________________________________________
consensus             CTCGTCCCTTAAGAGAGGTCGGGAGTTCGAATTCCTTCTTGTATGAAAAAACCAATCTGG
 
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rJMSF007I08+          CCAGCATTTTGCCCCTTAATTG                                      
rJMFF042O09+          CCAGCATTTTGCCCCTTAATTGGGCCGGTCCGGTGCGACGGGGATTAGTCTGAATATGGT
                      ____________________________________________________________
consensus             CCAGCATTTTGCCCCTTAATTGGGCCGGTCCGGTGCGACGGGGATTAGTCTGAATATGGT
 
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rJMFF042O09+          ACGGGCTTAAAGGTGCCTCTTACATTTAGGGTCCGCTCAGGATATCTCGTGAAAGCTTTG
                      ____________________________________________________________
consensus             ACGGGCTTAAAGGTGCCTCTTACATTTAGGGTCCGCTCAGGATATCTCGTGAAAGCTTTG
 
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rJMFF042O09+          ATATCTTTACAAACGTTCATTAGGTATTACAAAAAAGTTGTATTCATGTCCCATTTCTTT
                      ____________________________________________________________
consensus             ATATCTTTACAAACGTTCATTAGGTATTACAAAAAAGTTGTATTCATGTCCCATTTCTTT
 
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rJMFF042O09+          ACTCTTCTGCTGCAGTTGTTCCCATGAATATCTTCTTAGCTTAGCTTGTAATCTACTAGC
                      ____________________________________________________________
consensus             ACTCTTCTGCTGCAGTTGTTCCCATGAATATCTTCTTAGCTTAGCTTGTAATCTACTAGC
 
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rJMFF042O09+          TATTTCATTTTTCGAGGGTACGAGTGTCTGCTTGGATTGCTATGAGCCTTATGGCGAAGT
                      ____________________________________________________________
consensus             TATTTCATTTTTCGAGGGTACGAGTGTCTGCTTGGATTGCTATGAGCCTTATGGCGAAGT
 
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rJMFF042O09+          TTTGGACAATTTATCATGGACTACAATTATGTTGGATAAAGCGTATTCAACTATTGAACT
                      ____________________________________________________________
consensus             TTTGGACAATTTATCATGGACTACAATTATGTTGGATAAAGCGTATTCAACTATTGAACT