Contig 004103:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF042N16-                                                                 ACAACC
JMSF028D11-                                       GGCACGACGGACATTAATATACCCACACAACC
                      ____________________________________________________________
consensus                                         GGCACGACGGACATTAATATACCCACACAACC
 
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JMFF042N16-           TGCTCTCCTTTTCACTCTCATAATTCGCAGCAATGCTAGCATCAACGGCGTTGAATCTCG
JMSF028D11-           TGCTCTCCTTTTCACTCTCATAATTCGCAGCAATGCTAGCATCAACGGCGTTGAATCTCG
                      ____________________________________________________________
consensus             TGCTCTCCTTTTCACTCTCATAATTCGCAGCAATGCTAGCATCAACGGCGTTGAATCTCG
 
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JMFF042N16-           GCTCGTTCGGCGCCGGGGCCGTCAACAATTTTCCGGCGCACAATTCTCACAGGCTTTCTT
JMSF028D11-           GCTCGTTCGGCGCCGGGGCCGTCAACAATTTTCCGGCGCACAATTCTCACAGGCTTTCTT
                      ____________________________________________________________
consensus             GCTCGTTCGGCGCCGGGGCCGTCAACAATTTTCCGGCGCACAATTCTCACAGGCTTTCTT
 
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JMFF042N16-           CTCCACTTCACGGCTTCCAATCCTTGCCATTGTCGGCTCCGCCACACGCTGTGCTGAAGC
JMSF028D11-           CTCCACTTCACGGCTTCCAATCCTTGCCATTGTCGGCTCCGCCACACGCTGTGCTGAAGC
rJMSF028D11+                             ATCCTTGCCATTGTCGGCTCCGCCACACGCTGTGCTGAAGC
                      ____________________________________________________________
consensus             CTCCACTTCACGGCTTCCAATCCTTGCCATTGTCGGCTCCGCCACACGCTGTGCTGAAGC
 
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JMFF042N16-           AAAGCAGCCTCGGCGGGAAGTCAAGACCTTGCGTGAAAACCGCCGTAGCTGCTGTTGACT
JMSF028D11-           AAAGCAGCCTCGGCGGGAAGTCAAGACCTTGCGTGAAAACCGCCGTAGCTGCTGTTGACT
rJMSF028D11+          AAAGCAGCCTCGGCGGGAAGTCAAGACCTTGCGTGAAAACCGCCGTAGCTGCTGTTGACT
                      ____________________________________________________________
consensus             AAAGCAGCCTCGGCGGGAAGTCAAGACCTTGCGTGAAAACCGCCGTAGCTGCTGTTGACT
 
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JMFF042N16-           CCTCTGATCCCGCAGAAAAGGACAAGCAAGAATCAGAGAGGAAGAAGTATTATTTTGTTA
JMSF028D11-           CCTCTGATCCCGCAGAAAAGGACAAGCAAGAATCAGAGAGGAAGAAGTATTATTTTGTTA
rJMSF028D11+          CCTCTGATCCCGCAGAAAAGGACAAGCAAGAATCAGAGAGGAAGAAGTATTATTTTGTTA
                      ____________________________________________________________
consensus             CCTCTGATCCCGCAGAAAAGGACAAGCAAGAATCAGAGAGGAAGAAGTATTATTTTGTTA
 
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JMFF042N16-           TTGCAAACGCAAAATTCATGCTGGATGAAGAGGAGCATTTCCAGGAACAATTGTTTGA-G
JMSF028D11-           TTGCAAACGCAAAATTCATGCTGGATGAAGAGGAGCATTTCCAGGAACAATTGTTTGA-G
rJMSF028D11+          TTGCAAACGCAAAATTCATGCTGGATGAAGAGGAGCATTTCCAGGAACAATTGTTTGAGG
rJMFF042N16+           TGCAAACGCAAAATTCATGCTGGATGAAGAGGAGCATTTCCAGGAACAATTGTTTGA-G
                      ____________________________________________________________
consensus             TTGCAAACGCAAAATTCATGCTGGATGAAGAGGAGCATTTCCAGGAACAATTGTTTGA-G
 
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JMFF042N16-           CGTCTTCGGTACTTTGGAGAACGTGACTTTGAGCAGGATTTCTGGCTTGTGATTGAGCCC
JMSF028D11-           CGTCTTCGGTACTTTGGAGAACGTGACTTTGAGCAGGATTTCTGGCTTGTGATTGAGCCC
rJMSF028D11+          CGTCTTCGGTACTTTGGAGAACGTGACTTTGAGCAGGATTTCTGGCTTGTGATTGAGCCC
rJMFF042N16+          CGTCTTCGGTACTTTGGAGAACGTGACTTTGAGCAGGATTTCTGGCTTGTGATTGAGCCC
                      ____________________________________________________________
consensus             CGTCTTCGGTACTTTGGAGAACGTGACTTTGAGCAGGATTTCTGGCTTGTGATTGAGCCC
 
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JMFF042N16-           AAGTTCTTGGATAAATTTCCCAACATTACAAAGAAACTGAAGAGACCTGCAGTGGCTCTT
JMSF028D11-           AAGTTCTTGGATAAATTTCCCAACATTACAAAGAAACTGAAGAGACCTGCAGTGGCTCTT
rJMSF028D11+          AAGTTCTTGGATAAATTTCCCAACATTACAAAGAAACTGAAGAGACCTGCAGTGGCTCTT
rJMFF042N16+          AAGTTCTTGGATAAATTTCCCAACATTACAAAGAAACTGAAGAGACCTGCAGTGGCTCTT
                      ____________________________________________________________
consensus             AAGTTCTTGGATAAATTTCCCAACATTACAAAGAAACTGAAGAGACCTGCAGTGGCTCTT
 
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JMFF042N16-           GTTTCTACCAATGGCCCCTGGATCACGTTCATGAAACTAAGATTAGACAGAGTTTTACAA
JMSF028D11-           GTTTCTACCAATGGCCCCTGGATCACGTTCATGAAACTAAGATTAGACAGAGTTTTACAA
rJMSF028D11+          GTTTCTACCAATGGCCCCTGGATCACGTTCANGAAACTAAGATTAGACAGAGTTTTACAA
rJMFF042N16+          GTTTCTACCAATGGCCCCTGGATCACGTTCATGAAACTAAGATTAGACAGAGTTTTACAA
                      ____________________________________________________________
consensus             GTTTCTACCAATGGCCCCTGGATCACGTTCATGAAACTAAGATTAGACAGAGTTTTACAA
 
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JMFF042N16-           GATTCTTTTGAGGCTGATAGTCTAGAAGAAGCTTTGGCTTCTAACCCTGCTAAACTTGAG
JMSF028D11-           GATTCTTTTGAGGCTGATAGTCTAGAAGAAGCTTTGGCTTCTAACCCTGCTAAACTTGAG
rJMSF028D11+          GATTCTTTTGAGGCTGATAGTCTAGAAGAAGCTTTGGCTTCTAACCCTGCTAAACTTGAG
rJMFF042N16+          GATTCTTTTGAGGCTGATAGTCTAGAAGAAGCTTTGGCTTCTAACCCTGCTAAACTTGAG
                      ____________________________________________________________
consensus             GATTCTTTTGAGGCTGATAGTCTAGAAGAAGCTTTGGCTTCTAACCCTGCTAAACTTGAG
 
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JMFF042N16-           TTTGAG-AACCGGCAAACTGGACAGCACCATACCCG                        
JMSF028D11-           TTTGAGAAACCGGCAAACTGGACAGCACCATACCCGAAGTATAATTTTGGATGGTG    
rJMSF028D11+          TTTGAGAAACCGGCAAACTGGACAGCACCATACCCGAAGTATAATTTTGGATGGTGGGAG
rJMFF042N16+          TTTGAGAAACCGGCAAACTGGACAGCACCATACCCGAAGTATAATTTTGGATGGTGGGAG
                      ____________________________________________________________
consensus             TTTGAGAAACCGGCAAACTGGACAGCACCATACCCGAAGTATAATTTTGGATGGTGGGAG
 
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rJMSF028D11+          CCATTCTTGCCACCGGGATCTCAAGCACAAAAGGTATG---AGTAGTAGATGCGTTCCAC
rJMFF042N16+          CCATTCTTGCCACCGGGATCTCAAGCACAAAAGGTATGAGTAGTAGTAGATGCGTTCCAC
                      ____________________________________________________________
consensus             CCATTCTTGCCACCGGGATCTCAAGCACAAAAGGTATGAGTAGTAGTAGATGCGTTCCAC
 
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rJMSF028D11+          ATTTTTGTATTTTCCAGTATGTTGGCANGAAATTGTGAATTGGGAGCAAATGTCTGTTAG
rJMFF042N16+          ATTTTTGTATTTTCCAGTATGTTGGCATGAAATTGTGAATTGGGAGCAAATGTCTGTTAG
                      ____________________________________________________________
consensus             ATTTTTGTATTTTCCAGTATGTTGGCATGAAATTGTGAATTGGGAGCAAATGTCTGTTAG
 
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rJMSF028D11+          TTAAGGGATTTGGCATAACATCAGAACCTNGAATATATGAAGAGATGAATGTGGAAAGAC
rJMFF042N16+          TTAAGGGATTTGGCATAACATCAGAACCTAGAATATATGAAGAGATGAATGTGGAAAGAC
                      ____________________________________________________________
consensus             TTAAGGGATTTGGCATAACATCAGAACCTAGAATATATGAAGAGATGAATGTGGAAAGAC
 
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rJMSF028D11+          AGCAATAGGCTTATCTATCTTCTGTT                                  
rJMFF042N16+          AGCAATAGGCTTATCTATCTTCTGTTTCTTTTGTATAATAATCAGTTTCTAGTAAAAAAG
                      ____________________________________________________________
consensus             AGCAATAGGCTTATCTATCTTCTGTTTCTTTTGTATAATAATCAGTTTCTAGTAAAAAAG