| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041K13 | Sequence | 603 | 004101 (6) | ref|XP_010321276.1| | 1e-59 | PREDICTED: 50S ribosomal protein L9, chloroplastic isoform X3 [Solanum lycopers | 564 | 004101 (6) | emb|CDP14086.1| | 4e-32 | unnamed protein product [Coffea canephora] |
| JMFF042M08 | Sequence | 655 | 004101 (6) | emb|CDP14086.1| | 1e-66 | unnamed protein product [Coffea canephora] | 599 | 004101 (6) | emb|CDP14086.1| | 1e-35 | unnamed protein product [Coffea canephora] |
| JMSF014P06 | Sequence | 464 | 004101 (6) | ref|XP_006493612.1| | 4e-35 | PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X2 [Citrus sine | 726 | 004101 (6) | emb|CDP14086.1| | 7e-92 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF014P06- GATCGCCAATGCGACTCACCTAAGCTGAAGTCAG
JMFF041K13- ACCTAAGCTGAAGTCAG
JMFF042M08- ACCTAAGCTGAAGTCAG
____________________________________________________________
consensus GATCGCCAATGCGACTCACCTAAGCTGAAGTCAG
. : . : . : . : . : . :
JMSF014P06- CAACTCAGCCCTCGCCACTCACCAGTCAGTCGCCCGGAGTCCGCCGGACTCACCCATCGC
JMFF041K13- CAACTCAGCCCTCGCCACTCACCAGTCAGTCGCCCGGAGTCCGCCGGACTCACCCATCGC
JMFF042M08- CAACTCAGCCCTCGCCACTCACCAGTCAGTCGCCCGGAGTCCGCCGGACTCACCCATCGC
____________________________________________________________
consensus CAACTCAGCCCTCGCCACTCACCAGTCAGTCGCCCGGAGTCCGCCGGACTCACCCATCGC
. : . : . : . : . : . :
JMSF014P06- CACCGCACGCCGGCGGCAGATCATACCTTTGAACAGGCAGGCAAGGGCGTAAGGCAGCAG
JMFF041K13- CACCGCACGCCGGCGGCAGATCATACCTTTGAACAGGCAGGCAAGGGCGTAAGGCAGCAG
JMFF042M08- CACCGCACGCCGGCGGCAGATCATACCTTTGAACAGGCAGGCAAGGGCGTAAGGCAGCAG
____________________________________________________________
consensus CACCGCACGCCGGCGGCAGATCATACCTTTGAACAGGCAGGCAAGGGCGTAAGGCAGCAG
. : . : . : . : . : . :
JMSF014P06- TGCTGTACGCTGTTCTCTTACGATTCTGTTGTCAATTTCACAGCCTAAAATAATGGCCTA
JMFF041K13- TGCTGTACGCTGTTCTCTTACGATTCTGTTGTCAATTTCACAGCCTAAAATAATGGCCTA
JMFF042M08- TGCTGTACGCTGTTCTCTTACGATTCTGTTGTCAATTTCACAGCCTAAAATAATGGCCTA
____________________________________________________________
consensus TGCTGTACGCTGTTCTCTTACGATTCTGTTGTCAATTTCACAGCCTAAAATAATGGCCTA
. : . : . : . : . : . :
JMSF014P06- TGCACAAATCGGCAGAAATGCCGTCCGCCGCCAACTGAAGACTGCGTCTGATGGAGTGCT
JMFF041K13- TGCACAAATCGGCAGAAATGCCGTCCGCCGCCAACTGAAGACTGCGTCTGATGGAGTGCT
JMFF042M08- TGCACAAATCGGCAGAAATGCCGTCCGCCGCCAACTGAAGACTGCGTCTGATGGAGTGCT
____________________________________________________________
consensus TGCACAAATCGGCAGAAATGCCGTCCGCCGCCAACTGAAGACTGCGTCTGATGGAGTGCT
. : . : . : . : . : . :
JMSF014P06- CCACCACCCACTCTTCTACGCCGTTCAAGGCGTCCGCTACAGAAAAGTGGAAGTCATTCT
JMFF041K13- CCACCACCCACTCTTCTACGCCGTTCAAGGCGTCCGCTACAGAAAAGTGGAAGTCATTCT
JMFF042M08- CCACCACCCACTCTTCTACGCCGTTCAAGGCGTCCGCTACAGAAAAGTGGAAGTCATTCT
rJMSF014P06+ TACGCCGTTCAAGGCGTCCGCTACAGAAAAGTGGAAGTCATTCT
____________________________________________________________
consensus CCACCACCCACTCTTCTACGCCGTTCAAGGCGTCCGCTACAGAAAAGTGGAAGTCATTCT
. : . : . : . : . : . :
JMSF014P06- CACCAGTAGCATTGGCAAGCTTGGAAAGGTCGGCGATACTGTGAAGGTTGCACCGGGTTT
JMFF041K13- CACCAGTAGCATTGGCAAGCTTGGAAAGGTCGGCGATACTGTGAAGGTTGCACCGGGTTT
JMFF042M08- CACCAGTAGCATTGGCAAGCTTGGAAAGGTCGGCGATACTGTGAAGGTTGCACCGGGTTT
rJMSF014P06+ CACCAGTAGCATTGGCAAGCTTGGAAAGGTCGGCGATACTGTGAAGGTTGCACCGGGTTT
____________________________________________________________
consensus CACCAGTAGCATTGGCAAGCTTGGAAAGGTCGGCGATACTGTGAAGGTTGCACCGGGTTT
. : . : . : . : . : . :
JMSF014P06- CTTTCGGAACCATCTGATGCCAAAGTTGCTTGCTGTCCCTAACATTGATAAGTATCGGCA
JMFF041K13- CTTTCGGAACCATCTGATGCCAAAGTTGCTTGCTGTCCCTAACATTGATAAGTATCGGCA
JMFF042M08- CTTTCGGAACCATCTGATGCCAAAGTTGCTTGCTGTCCCTAACATTGATAAGTATCGGCA
rJMSF014P06+ CTTTCGGAACCATCTGATGCCAAAGTTGCTTGCTGTCCCTAACATTGATAAGTATCGGCA
____________________________________________________________
consensus CTTTCGGAACCATCTGATGCCAAAGTTGCTTGCTGTCCCTAACATTGATAAGTATCGGCA
. : . : . : . : . : . :
JMSF014P06- TCTCCTCGAA
JMFF041K13- TCTCCTCGAAGATCAGCGCAAGATTTACCAACCAAAAGAAGATGAAGAGGTTAAAGTGGT
JMFF042M08- TCTCCTCGAAGATCAGCGCAAGATTTACCAACCAAAAGAAGATGAAGAGGTTAAAGTGGT
rJMSF014P06+ TCTCCTCGAAGATCAGCGCAAGATTTACCAACCAAAAGAAGATGAAGAGGTTAAAGTGGT
____________________________________________________________
consensus TCTCCTCGAAGATCAGCGCAAGATTTACCAACCAAAAGAAGATGAAGAGGTTAAAGTGGT
. : . : . : . : . : . :
JMFF041K13- TCCACAGACCAAGGAAGATAGGATGAAAGAATACCAGGCAGCAGCCAATCGCCTTGATAG
JMFF042M08- TCCACAGACCAAGGAAGATAGGATGAAAGAATACCAGGCAGCAGCCAATCGCCTTGATAG
rJMSF014P06+ TCCACAGACCAAGGAAGATAGGATGAAAGAATACCAGGCAGCAGCCAATCGCCTTGATAG
____________________________________________________________
consensus TCCACAGACCAAGGAAGATAGGATGAAAGAATACCAGGCAGCAGCCAATCGCCTTGATAG
. : . : . : . : . : . :
JMFF041K13- AACTAAAGTGGTTGTCAGAAAATTCATCAAGGTTGACAATGAGATA
JMFF042M08- AACTAAAGTGGTTGTCAGAAAATTCATCAAGGTTGACAATGAGATACGAGAACCTGTAAC
rJMSF014P06+ AACTAAAGTGGTTGTCAGAAAATTCATCAAGGTTGACAATGAGATACGAGAACCTGTAAC
rJMFF041K13+ CAATGAGATACGAGAACCTGTAAC
rJMFF042M08+ ACTAAAGTGGTTGTCAGAAAATTCATCAAGGTTGACAATGAGATACGAGAACCTGTAAC
____________________________________________________________
consensus AACTAAAGTGGTTGTCAGAAAATTCATCAAGGTTGACAATGAGATACGAGAACCTGTAAC
. : . : . : . : . : . :
JMFF042M08- AAAAGAAGAAATTGTAGATGAGGTTGCAAGACAGCTTT
rJMSF014P06+ AAAAGAAGAAATTGTAGATGAGGTTGCAAGACAGCTTTCTGTGAGCATTGAACCTGAGAA
rJMFF041K13+ AAAAGAAGAAATTGTAGATGAGGTTGCAAGACAGCTTTCTGTGAGCATTGAACCTGAGAA
rJMFF042M08+ AAAAGAAGAAATTGTAGATGAGGTTGCAAGACAGCTTTCTGTGAGCATTGAACCTGAGAA
____________________________________________________________
consensus AAAAGAAGAAATTGTAGATGAGGTTGCAAGACAGCTTTCTGTGAGCATTGAACCTGAGAA
. : . : . : . : . : . :
rJMSF014P06+ TTTGCACTTACCTTCTCCTCTATCCTCTCTGGGTGAATTTGAAGTGCCACTTCGCCTACC
rJMFF041K13+ TTTGCACTTACCTTCTCCTCTATCCTCTCTGGGTGAATTTGAAGTGCCACTTCGCCTACC
rJMFF042M08+ TTTGCACTTACCTTCTCCTCTATCCTCTCTGGGTGAATTTGAAGTGCCACTTCGCCTACC
____________________________________________________________
consensus TTTGCACTTACCTTCTCCTCTATCCTCTCTGGGTGAATTTGAAGTGCCACTTCGCCTACC
. : . : . : . : . : . :
rJMSF014P06+ AAGGTCCATCCCTTTGCCCGATGGAAAGGTGCAATGGGCTCTCAAAATAAAAATTCGGAG
rJMFF041K13+ AAGGTCCATCCCTTTGCCCGATGGAAAGGTGCAATGGGCTCTCAAAATAAAAATTCGGAG
rJMFF042M08+ AAGGTCCATCCCTTTGCCCGATGGAAAGGTGCAATGGGCTCTCAAAATAAAAATTCGGAG
____________________________________________________________
consensus AAGGTCCATCCCTTTGCCCGATGGAAAGGTGCAATGGGCTCTCAAAATAAAAATTCGGAG
. : . : . : . : . : . :
rJMSF014P06+ AAAATAAATAGGAGCAGTAACTCAAAAACACTTTTGCTACGAGAGGAGAGCTTGTTTTTT
rJMFF041K13+ AAAATAAATAGGAGCAGTAACTCAAAAACACTTTTGCTACGAGAGGAGAGCTTGTTTTTT
rJMFF042M08+ AAAATAAATAGGAGCAGTAACTCAAAAACACTTTTGCTACGAGAGGAGAGCTTGTTTTTT
____________________________________________________________
consensus AAAATAAATAGGAGCAGTAACTCAAAAACACTTTTGCTACGAGAGGAGAGCTTGTTTTTT
. : . : . : . : . : . :
rJMSF014P06+ AGCCGGGAATGCAAAAATAGTTGTAGACGAAGGGCTAAACGATCATTCCTAAAGAGTCTC
rJMFF041K13+ AGCCGGGAATGCAAAAATAGTTGTAGACGAAGGGCTAAACGATCATTCCTAAAGAGTCTC
rJMFF042M08+ AGCCGGGAATGCAAAAATAGTTGTAGACGAAGGGCTAAACGATCATTCCTAAAGAGTCTC
____________________________________________________________
consensus AGCCGGGAATGCAAAAATAGTTGTAGACGAAGGGCTAAACGATCATTCCTAAAGAGTCTC
. : . : . : . : . : . :
rJMSF014P06+ CTGAATCTTAATAATGATAATTTGATGTAATGGTGCAAGTACTGCTGGCATAATATTTTG
rJMFF041K13+ CTGAATCTTAATAATGATAATTTGATGTAATGGTGCAAGTACTGCTGGCATAATATTTTG
rJMFF042M08+ CTGAATCTTAATAATGATAATTTGATGTAATGGTGCAAGTACTGCTGGCATAATATTTTG
____________________________________________________________
consensus CTGAATCTTAATAATGATAATTTGATGTAATGGTGCAAGTACTGCTGGCATAATATTTTG
. : . : . : . : . : . :
rJMSF014P06+ TAATCTTGGCTAGGAAAGGATT
rJMFF041K13+ TAATCTTGGCTAGGAAAGGATTTGATTATGATCTCCTATTCTTATTCTGCATTCATTTTC
rJMFF042M08+ TAATCTTGGCTAGGAAAGGATTTGATTATGATCTCCTATTCTTATTCTGCATTCATTTTC
____________________________________________________________
consensus TAATCTTGGCTAGGAAAGGATTTGATTATGATCTCCTATTCTTATTCTGCATTCATTTTC
. : . : . : . : . : . :
rJMFF041K13+ AGTGGCAAGAAAGTCCACATAGGGAAGTTGCGGATTGAAAGCCATGCATTATGATTTATG
rJMFF042M08+ AGTGGCAAGAAAGTCCACATAGGGAAGTTGCGGATTGAAAGCCATGCATTATGATTTATG
____________________________________________________________
consensus AGTGGCAAGAAAGTCCACATAGGGAAGTTGCGGATTGAAAGCCATGCATTATGATTTATG
. : . : . : . : . : . :
rJMFF041K13+ CATACCCACCGAATTCAGCCCACAGATTTTCATGTTTTGTTACGTGTAAAACCCATGGCC
rJMFF042M08+ CATACCCACCGAATTCAGCCCACAGATTTTCATGTTTTGTTACGTGTAAAACCCATGGCC
____________________________________________________________
consensus CATACCCACCGAATTCAGCCCACAGATTTTCATGTTTTGTTACGTGTAAAACCCATGGCC