| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009N12 | Sequence | 564 | 004094 (8) | gb|ADX99209.1| | 2e-128 | zeaxanthin epoxidase [Ipomoea nil] | 781 | 004094 (8) | gb|ADX99209.1| | 1e-134 | zeaxanthin epoxidase [Ipomoea nil] |
| JMFF017L03 | Sequence | 577 | 004094 (8) | gb|ADX99209.1| | 8e-131 | zeaxanthin epoxidase [Ipomoea nil] | 752 | 004094 (8) | gb|ADX99209.1| | 6e-127 | zeaxanthin epoxidase [Ipomoea nil] |
| JMFF035E12 | Sequence | 541 | 016308 | gb|ADX99209.1| | 4e-125 | zeaxanthin epoxidase [Ipomoea nil] | 634 | 004094 (8) | gb|ADX99209.1| | 2e-91 | zeaxanthin epoxidase [Ipomoea nil] |
| JMFF041L08 | Sequence | 655 | 013128 (6) | emb|CDP10610.1| | 9e-73 | unnamed protein product [Coffea canephora] | 542 | 004094 (8) | gb|ADX99209.1| | 6e-60 | zeaxanthin epoxidase [Ipomoea nil] |
| JMSF049D03 | Sequence | 620 | 004094 (8) | gb|ADX99209.1| | 1e-127 | zeaxanthin epoxidase [Ipomoea nil] | 727 | 004094 (8) | gb|ADX99209.1| | 3e-132 | zeaxanthin epoxidase [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
JMFF009N12- GTCGT
JMFF017L03- GTCGT
____________________________________________________________
consensus GTCGT
. : . : . : . : . : . :
JMFF009N12- GTTACCTTACTCGGGGATTCGATCCATGCTATGCAGCCAAATTTGGGTCAAGGGGGATGC
JMFF017L03- GTTGCCTTACTCGGGGATTCGATCCATGCTATGCAGCCAAATTTGGGTCAAGGGGGATGC
____________________________________________________________
consensus GTTGCCTTACTCGGGGATTCGATCCATGCTATGCAGCCAAATTTGGGTCAAGGGGGATGC
. : . : . : . : . : . :
JMFF009N12- ATGGCCATAGAGGATGGGTATCAACTAGCTCTTGAGCTTGACAAAGCTTGGAGGCAAAGT
JMFF017L03- ATGGCCATAGAGGATGGGTATCAACTAGCTCTTGAGCTTGACAAAGCTTGGAGGCAAAGT
____________________________________________________________
consensus ATGGCCATAGAGGATGGGTATCAACTAGCTCTTGAGCTTGACAAAGCTTGGAGGCAAAGT
. : . : . : . : . : . :
JMFF009N12- GTCGAGTCGGGAGCCCCTATAGATATCACATCTTCGTTAAAAAGTTACGAGAAAGAGAGA
JMFF017L03- GTCGAGTCGGGAGCCCCTATAGATATCACATCTTCGTTAAAAAGTTACGAGAAAGAGAGA
____________________________________________________________
consensus GTCGAGTCGGGAGCCCCTATAGATATCACATCTTCGTTAAAAAGTTACGAGAAAGAGAGA
. : . : . : . : . : . :
JMFF009N12- AGACTGAGAGTCGGAATCATCCACGGGCTGGCCCGAATGGCTGCATTGATGGCAGCAACT
JMFF017L03- AGACTGAGAGTCGGAATCATCCACGGGCTGGCCCGAATGGCTGCATTGATGGCAGCAACT
JMSF049D03- GCTGGCCCGAATGGCTGCATTGATGGCAGCAACT
____________________________________________________________
consensus AGACTGAGAGTCGGAATCATCCACGGGCTGGCCCGAATGGCTGCATTGATGGCAGCAACT
. : . : . : . : . : . :
JMFF009N12- TATAAGGCATATTTAGGCGTAGGACTCGGTCCATTATCGTTCTTAACCCAATTTAGGATA
JMFF017L03- TATAAGGCATATTTAGGCGTAGGACTCGGTCCATTATCGTTCTTAACCCAATTTAGGATA
JMSF049D03- TATAAGGCATATTTAGGCGTAGGACTCGGTCCATTATCGTTCTTAACCCAATTTAGGATA
rJMSF049D03+ TAGGATA
rJMFF009N12+ TAACCCAATTTAGGATA
____________________________________________________________
consensus TATAAGGCATATTTAGGCGTAGGACTCGGTCCATTATCGTTCTTAACCCAATTTAGGATA
. : . : . : . : . : . :
JMFF009N12- CCACATCCCGGAAGAGTTGGTGGGAGATTTTTTATAGACCTCGCGATGCCTTTAATGCTT
JMFF017L03- CCACATCCCGGAAGAGTTGGTGGGAGATTTTTTATAGACCTCGCGATGCCTTTAATGCTT
JMSF049D03- CCACATCCCGGAAGAGTTGGTGGGAGATTTTTTATAGACCTCGCGATGCCTTTAATGCTT
rJMSF049D03+ CCACATCCCGGAAGAGTTGGTGGGAGATTTTTTATAGACCTCGCGATGCCTTTAATGCTT
rJMFF009N12+ CCACATCCCGGAAGAGTTGGTGGGAGATTTTTTATAGACCTCGCGATGCCTTTAATGCTT
rJMFF017L03+ AGAGTTGGTGGGAGATTTTTTATAGACCTCGCGATGCCTTTAATGCTT
____________________________________________________________
consensus CCACATCCCGGAAGAGTTGGTGGGAGATTTTTTATAGACCTCGCGATGCCTTTAATGCTT
. : . : . : . : . : . :
JMFF009N12- AGTTGGGTCCTAGGAGGCAATGGAGAAAAACTTGAAGGCAGGCCGAAGCAGTGCAGATTG
JMFF017L03- AGTTGGGTCCTAGGAGGCAATGGAGAAAAACTTGAAGGCAGGCCGAAGCAGTGCAGATTG
JMSF049D03- AGTTGGGTCCTAGGAGGCAATGGAGAAAAACTTGAAGGCAGGCCGAAGCAGTGCAGATTG
rJMSF049D03+ AGTTGGGTCCTAGGAGGCAATGGAGAAAAACTTGAAGGCAGGCCGAAGCAGTGCAGATTG
rJMFF009N12+ AGTTGGGTCCTAGGAGGCAATGGAGAAAAACTTGAAGGCAGGCCGAAGCAGTGCAGATTG
rJMFF017L03+ AGTTGGGTCCTAGGAGGCAATGGAGAAAAACTTGAAGGCAGGCCGAAGCAGTGCAGATTG
____________________________________________________________
consensus AGTTGGGTCCTAGGAGGCAATGGAGAAAAACTTGAAGGCAGGCCGAAGCAGTGCAGATTG
. : . : . : . : . : . :
JMFF009N12- TCTGATAAGGCTAATGATCAGCTGCGGAAATGGTTTGACGATGACGATGCATTGGAGCGT
JMFF017L03- TCTGATAAGGCTAATGATCAGCTGCGGAAATGGTTTGACGATGACGATGCATTGGAGCGT
JMSF049D03- TCTGATAAGGCTAATGATCAGCTGCGGAAATGGTTTGACGATGACGATGCATTGGAGCGT
rJMSF049D03+ TCTGATAAGGCTAATGATCAGCTGCGGAAATGGTTTGACGATGACGATGCATTGGAGCGT
rJMFF009N12+ TCTGATAAGGCTAATGATCAGCTGCGGAAATGGTTTGACGATGACGATGCATTGGAGCGT
rJMFF035E12+ AAATGGTTTGACGATGACGATGCATTGGAGCGT
rJMFF017L03+ TCTGATAAGGCTAATGATCAGCTGCGGAAATGGTTTGACGATGACGATGCATTGGAGCGT
____________________________________________________________
consensus TCTGATAAGGCTAATGATCAGCTGCGGAAATGGTTTGACGATGACGATGCATTGGAGCGT
. : . : . : . : . : . :
JMFF009N12- GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
JMFF017L03- GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
JMSF049D03- GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
rJMSF049D03+ GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
rJMFF009N12+ GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
rJMFF035E12+ GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
rJMFF017L03+ GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
rJMFF041L08+ AA
____________________________________________________________
consensus GCCATGAATGGAGAATGGTTTTTATCTCCACTCAAGAATGCAACAAGTACTGCTTCAGAA
. : . : . : . : . : . :
JMFF009N12- CCCATTTTGTTACGCAGAG
JMFF017L03- CCCATTTTGTTACGCAGAGACGAAAAAACGCC
JMSF049D03- CCCATTTTGTTACGCAGAGACGAAAAAACGCCCTGCATAGTTGGGTCTGTGCCACATCCA
rJMSF049D03+ CCCATTTTGTTACGCAGAGACGAAAAAACGCCCTGCATAGTTGGGTCTGTGCCACATCCA
rJMFF009N12+ CCCATTTTGTTACGCAGAGACGAAAAAACGCCCTGCATAGTTGGGTCTGTGCCACATCCA
rJMFF035E12+ CCCATTTTGTTACGCAGAGACGAAAAAACGCCCTGCATAGTTGGGTCTGTGCCACATCCA
rJMFF017L03+ CCCATTTTGTTACGCAGAGACGAAAAAACGCCCTGCATAGTTGGGTCTGTGCCACATCCA
rJMFF041L08+ CCCATTTTGTTACGCAGAGACGAAAAAACGCCCTGCATAGTTGGGTTTGTGCCACATCCA
____________________________________________________________
consensus CCCATTTTGTTACGCAGAGACGAAAAAACGCCCTGCATAGTTGGGTCTGTGCCACATCCA
. : . : . : . : . : . :
JMSF049D03- AACTTCCCGGGAACATCAGTAGTCGTGTCTTCACCCGAGGTGTCCGAACTGCATGCTCGA
rJMSF049D03+ AACTTCCCGGGAACATCAGTAGTCGTGTCTTCACCCGAGGTGTCCGAACTGCATGCTCGA
rJMFF009N12+ AACTTCCCGGGAACATCAGTAGTCGTGTCTTCACCCGAGGTGTCCGAACTGCATGCTCGA
rJMFF035E12+ AACTTCCCGGGAACATCAGTAGTCGTGTCTTCACCCGAGGTGTCCGAACTGCATGCTCGA
rJMFF017L03+ AACTTCCCGGGAACATCAGTAGTCGTGTCTTCACCCGAGGTGTCCGAACTGCATGCTCGA
rJMFF041L08+ AACTTCCCGGGAACATCAGTAGTGGTGTCTTCACCCGAGGTGTCCGAACTGCATGCTCGA
____________________________________________________________
consensus AACTTCCCGGGAACATCAGTAGTCGTGTCTTCACCCGAGGTGTCCGAACTGCATGCTCGA
. : . : . : . : . : . :
JMSF049D03- ATAAGCTATAAAGATGGCGCTTTCTTCGTGACTGATTTGCGTAGTAAACATGGTACTTGG
rJMSF049D03+ ATAAGCTATAAAGATGGCGCTTTCTTCGTGACTGATTTGCGTAGTAAACATGGTACTTGG
rJMFF009N12+ ATAAGCTATAAAGATGGCGCTTTCTTCGTGACTGATTTGCGTAGTAAACATGGTACTTGG
rJMFF035E12+ ATAAGCTATAAAGATGGCGCTTTCTTCGTGACTGATTTGCGTAGTAAACATGGTACTTGG
rJMFF017L03+ ATAAGCTATAAAGATGGCGCTTTCTTCGTGACTGATTTGCGTAGTAAACATGGTACTTGG
rJMFF041L08+ ATAAGCTATAAAAATGGCGCTTTTTTCGTGACTGATTTGGGTAGTAAACATGGTACTTGG
____________________________________________________________
consensus ATAAGCTATAAAGATGGCGCTTTCTTCGTGACTGATTTGCGTAGTAAACATGGTACTTGG
. : . : . : . : . : . :
JMSF049D03- ATCACCGACNACGAGGGCAGACGCTATCGGGTGTCCCCGAACTTTCCAACCCGTTTTCAT
rJMSF049D03+ ATCACCGACAACGAGGGCAGACGCTATCGGGTGTCCCCGAACTTTCCAACCCGTTTTCAT
rJMFF009N12+ ATCACCGACAACGAGGGCAGGCGCTATCGGGTGTCCCCGAACTTTCCAACCCGTTTTCAT
rJMFF035E12+ ATCACCGACAACGAGGGCAGGCGCTATCGGGTGTCCCCGAACTTTCCAACCCGTTTTCAT
rJMFF017L03+ ATCACCGACAACGAGGGCAGGCGCTATCGGGTGTCCCCGAACTTTCCAACCCGTTTTCAT
rJMFF041L08+ ATCCCCGACAACGAGGGCAGGCGCTATCGGGGGTCCCCGAACTTTCCAACCCGTTTTCAT
____________________________________________________________
consensus ATCACCGACAACGAGGGCAGGCGCTATCGGGTGTCCCCGAACTTTCCAACCCGTTTTCAT
. : . : . : . : . : . :
JMSF049D03- CCTTCAGACATCGTCGAATTCGGGTCTGATCGCAAGGCGGCCTTCC
rJMSF049D03+ CCTTCAGACATCGTCGAATTCGGGTCTGATCGCAAGGCGGCCTTCCACGTGAAGGTGAAG
rJMFF009N12+ CCTTCAGACATCGTCGAATTCGGGTCTGATCGCAAGGCGGCCTTCCACGTGAAGGTGAAG
rJMFF035E12+ CCTTCAGACATCGTCGAATTCGGGTCTGATCGCAAGGCGGCCTTCCACGTGAAGGTGAAG
rJMFF017L03+ CCTTCAGACATCGTCGAATTCGGGTCTGATCGCAAGGCGGCNTTCCACGTGAAGGTGAAG
rJMFF041L08+ CCTTCAGACATCGTGGAATTCGGGTTTGATCGCAAGGCGGCCTTCCACGTGAAGGTGAAG
____________________________________________________________
consensus CCTTCAGACATCGTCGAATTCGGGTCTGATCGCAAGGCGGCCTTCCACGTGAAGGTGAAG
. : . : . : . : . : . :
rJMSF049D03+ GTGATGAAATTTCCGCCATTTTCCGGCGGGAAGGGAGAGATGGAAGTTTTGCAGGCAGCG
rJMFF009N12+ GTGATGAAATTTCCGCCATTTTCCGGCGGGAAGGGAGAGATGGAAGTTTTGCAGGCAGCG
rJMFF035E12+ GTGATGAAATTTCCGCCATTTTCCGGCGGGAAGGGAGAGATGGAAGTTTTGCAGGCAGCG
rJMFF017L03+ GTGATGAAATTTCCGCCATTTTCCGGCGGGAAGGGAGAGATGGAAGTTTTGCAGGCAGCG
rJMFF041L08+ GTGATGAAATTTCCGCCATTTTCCGGCGGGAAGGGAAAAATGGAAGTTTTGCAGGCAGGG
____________________________________________________________
consensus GTGATGAAATTTCCGCCATTTTCCGGCGGGAAGGGAGAGATGGAAGTTTTGCAGGCAGCG
. : . : . : . : . : . :
rJMSF049D03+ TAGGCATTCTCAAGAAAACCGAATTGGTCTAATATGCGAAGAAACACATAGAAATTGTAC
rJMFF009N12+ TAGGCATTCTCAAGAAAACCGAATTGGTCTAATATGCGAAGAAACACATAGAAATTGTAC
rJMFF035E12+ TAGGCATTCTCAAGAAAACCGAATTGGTCTAATATGCGAAGAAACACATAGAAATTGTAC
rJMFF017L03+ TAGGCATTCTCAAGAAAACCGAATTGGTCTAATATGCGAAGAAACACATAGAAATTGTAC
rJMFF041L08+ TAGGCATTTTCAAAAAAACCGAATTGGTTTAATATGCGAAGAAACCCATAGAAATTGTAC
____________________________________________________________
consensus TAGGCATTCTCAAGAAAACCGAATTGGTCTAATATGCGAAGAAACACATAGAAATTGTAC
. : . : . : . : . : . :
rJMSF049D03+ AGGATTTATCCATGGCAGCTGAGCCCTGTAAAGCTGCTGCATTTTGTACCATGTATAGAT
rJMFF009N12+ AGGATTTATCCATGGCAGCTGAGCCCTGTAAAGCTGCTGCATTTTGTACCATGTATAGAT
rJMFF035E12+ AGGATTTATCCATGGCAGCTGAGCCCTGTAAAGCTGCTGCATTTTGTACCATGTATAGAT
rJMFF017L03+ AGGATTTATCCATGGCAGCTGAGCCCTGTAAAGCTGCTGCATTTTGTACCATGTATAGAT
rJMFF041L08+ AGGATTTATCCATGGCAGCTGAGCCCTGTAAAGCTGCTGCATTTTGTACCATGTATAGAT
____________________________________________________________
consensus AGGATTTATCCATGGCAGCTGAGCCCTGTAAAGCTGCTGCATTTTGTACCATGTATAGAT
. : . : . : . : . : . :
rJMFF009N12+ TTACTGTAATTCAGAACAAGAAATCACTAGAAATGCGAAAGTTA
rJMFF035E12+ TTACTGTAATTCAGAACAAGAAATCACTAGAAATGCGAAAGTTA
rJMFF017L03+ TTACTGTAATTCAGAACAAGAAATCACTAGAAATGCGAAAGTTA
rJMFF041L08+ TTACTGTAATTCAGAACAAGAAATCCCTAGAAATGCGAAAGTTATTACAACAGATTCCCT
____________________________________________________________
consensus TTACTGTAATTCAGAACAAGAAATCACTAGAAATGCGAAAGTTATTACAACAGATTCCCT