| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002B04 | Sequence | 284 | 004091 (7) | ref|XP_004287882.1| | 1e-16 | PREDICTED: pheophytinase, chloroplastic [Fragaria vesca subsp. vesca] | |||||
| JMFF039O19 | Sequence | 530 | 004091 (7) | ref|XP_004233528.1| | 6e-79 | PREDICTED: pheophytinase, chloroplastic [Solanum lycopersicum] | 759 | 004091 (7) | ref|XP_009764226.1| | 1e-102 | PREDICTED: pheophytinase, chloroplastic [Nicotiana sylvestris] |
| JMFF041I22 | Sequence | 634 | 004091 (7) | emb|CDP02000.1| | 1e-73 | unnamed protein product [Coffea canephora] | 602 | 004091 (7) | ref|XP_009764226.1| | 3e-68 | PREDICTED: pheophytinase, chloroplastic [Nicotiana sylvestris] |
| JMSF029D15 | Sequence | 666 | 004091 (7) | emb|CDP02000.1| | 2e-105 | unnamed protein product [Coffea canephora] | 737 | 004091 (7) | ref|XP_009764226.1| | 4e-104 | PREDICTED: pheophytinase, chloroplastic [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFF041I22- AAGAAAGCCCAGTATTCGACTTCCAGAGCATTTGCAGTGGAATTAGA
JMFF039O19- AAGAAAGCCCAGTATTCGACTTCCAGAGCATTTGCAGTGGAATTAGA
JMSF029D15- GGGATTCAAGAAAGCCCAGTATTCGACTTCCAGAGCATTTGCAGTGGAATTAGA
____________________________________________________________
consensus GGGATTCAAGAAAGCCCAGTATTCGACTTCCAGAGCATTTGCAGTGGAATTAGA
. : . : . : . : . : . :
JMFF041I22- ATTTAGAATCCATGTCGCCTTCGTGCGCCATAGTGCCAGGCACGCTTAGAACAGATTGGT
JMFF039O19- ATTTAGAATCCATGTCGCCTTCGTGCGCCATAGTGCCAGGCACGCTTAGAACAGATTGGT
JMSF029D15- ATTTAGAATCCATGTCGCCTTCGTGCGCCATAGTGCCAGGCACGCTTAGAACAGATTGGT
____________________________________________________________
consensus ATTTAGAATCCATGTCGCCTTCGTGCGCCATAGTGCCAGGCACGCTTAGAACAGATTGGT
. : . : . : . : . : . :
JMFF041I22- TCAACCCGAATAGGAACAGCCTAATTGCTCCTGCGAGAATCAACCAGAGAGGCAAGTGCG
JMFF039O19- TCAACCCGAATAGGAACAGCCTAATTGCTCCTGCGAGAATCAACCAGAGAGGCAAGTGCG
JMSF029D15- TCAACCCGAATAGGAACAGCCTAATTGCTCCTGCGAGAATCAACCAGAGAGGCAAGTGCG
____________________________________________________________
consensus TCAACCCGAATAGGAACAGCCTAATTGCTCCTGCGAGAATCAACCAGAGAGGCAAGTGCG
. : . : . : . : . : . :
JMFF041I22- AATTGAGTAGAAGGGGTTTTGTTTTTAAAGGGATTTTTGCTGCTGGAGCTTCAGTTATAG
JMFF039O19- AATTGAGTAGAAGGGGTTTTGTTTTTAAAGGGATTTTTGCTGCTGGAGCTTCAGTTATAG
JMSF029D15- AATTGAGTAGAAGGGGTTTTGTTTTTAAAGGGATTTTTGCTGCTGGAGCTTCAGTTATAG
____________________________________________________________
consensus AATTGAGTAGAAGGGGTTTTGTTTTTAAAGGGATTTTTGCTGCTGGAGCTTCAGTTATAG
. : . : . : . : . : . :
JMFF041I22- CCCCTTCTGAAGCTGCACAGCCCTCTCAAGGGTTGGAAAGGTTGCCATTTAAGCCAGA-G
JMFF039O19- CCCCTTCTGAAGCTGCACAGCCCTCTCAAGGGTTGGAAAGGTTGCCATTTAAGCCAGAGG
JMSF029D15- CCCCTTCTGAAGCTGCACAGCCCTCTCAAGGGTTGGAAAGGTTGCCATTTAAGCCAGAGG
____________________________________________________________
consensus CCCCTTCTGAAGCTGCACAGCCCTCTCAAGGGTTGGAAAGGTTGCCATTTAAGCCAGAGG
. : . : . : . : . : . :
JMFF041I22- TGTACAACTTCTGGACATGGAAAGGCCACAGAATTCATTATGTGGTGGAAGGAGAGGGGA
JMFF039O19- GGTACAACTTCTGGACATGGAAAGGCCACAGAATTCATTATGTGGTGGAAGGAGAGGGGA
JMSF029D15- GGTACAACTTCTGGACATGGAAAGGCCACAGAATTCATTATGTGGTGGAAGGAGAGGGGA
____________________________________________________________
consensus GGTACAACTTCTGGACATGGAAAGGCCACAGAATTCATTATGTGGTGGAAGGAGAGGGGA
. : . : . : . : . : . :
JMFF041I22- TTCCAATTGTTCTAGTTCATGGCTTTGGTGCTTCTGCTTTTCACTGGAGGTATAATATAC
JMFF039O19- TTCCAATTGTTCTAGTTCATGGCTTTGGTGCTTCTGCTTTTCACTGGAGGTATAATATAC
JMSF029D15- TTCCAATTGTTCTAGTTCATGGCTTTGGTGCTTCTGCTTTTCACTGGAGGTATAATATAC
____________________________________________________________
consensus TTCCAATTGTTCTAGTTCATGGCTTTGGTGCTTCTGCTTTTCACTGGAGGTATAATATAC
. : . : . : . : . : . :
JMFF041I22- CAGAATTGGCTAAAAAATACAAGGTTTACGCTCTGGATTTGCTTGGGTTTGGATGGAGTG
JMFF039O19- CAGAATTGGCTAAAAAATACAAGGTTTACGCTCTGGATTTGCTTGGGTTTGGATGGAGTG
JMSF029D15- CAGAATTGGCTAAAAAATACAAGGTTTACGCTCTGGATTTGCTTGGGTTTGGATGGAGTG
____________________________________________________________
consensus CAGAATTGGCTAAAAAATACAAGGTTTACGCTCTGGATTTGCTTGGGTTTGGATGGAGTG
. : . : . : . : . : . :
JMFF041I22- AGAAGGCACTCGTTGAGTATGATGCCTTGATCTGGAGAGATCAGGTTGTGGATTTCTTGA
JMFF039O19- AGAAGGCACTCGTTGAGTATGATGCCTTGATCTGGAGAGATCAGGTTGTGGATTTCTTGA
JMSF029D15- AGAAGGCACTCGTTGAGTATGATGCCTTGATCTGGAGAGATCAGGTTGTGGATTTCTTGA
____________________________________________________________
consensus AGAAGGCACTCGTTGAGTATGATGCCTTGATCTGGAGAGATCAGGTTGTGGATTTCTTGA
. : . : . : . : . : . :
JMFF041I22- AGGAGATAGTCAAAGAACCAGCAGTTTTAGTTGGAAACAGCCTCGGAGGGTTTACAACTT
JMFF039O19- AGG
JMSF029D15- AGGAGATAGTCAAAGAACCAGCAGTTTTAGTTGGAAACAGCCTCGGAGGGTTTACAACTT
rJMSF029D15+ AGGAGATAGTCAAAGAACCAGCAGTTTTAGTTGGAAACAGCCTCGGAGGGTTTACAACTT
rJMFF039O19+ AGGAGATAGTCAAAGACCCAGCAGTTTTAGTTGGAAACAGCCTCGGAGGGTTTACAACTT
____________________________________________________________
consensus AGGAGATAGTCAAAGAACCAGCAGTTTTAGTTGGAAACAGCCTCGGAGGGTTTACAACTT
. : . : . : . : . : . :
JMFF041I22- TGGTAGCAGCAACAACATTGCCAGAAAAAGTGAAAGGAGTTG
JMSF029D15- TGGTAGCAGCAACAACATTGCCAGAAAAAGTGAAAGGAGTTGTCTTGTTAAATAGTGCAG
rJMSF029D15+ TGGTAGCAGCAACAACATTGCCAGAAAAAGTGAAAGGAGTTGTCTTGTTAAATAGTGCAG
rJMFF039O19+ TGGTAGCAGCAACAACATTGCCAGAAAAAGTGAAAGGAGTTGTCTTGTTAAATAGTGCAG
____________________________________________________________
consensus TGGTAGCAGCAACAACATTGCCAGAAAAAGTGAAAGGAGTTGTCTTGTTAAATAGTGCAG
. : . : . : . : . : . :
JMSF029D15- GACAATTTGGGG
rJMSF029D15+ GACAATTTGGGGACGCAAGTTCTGCAACGACTGAGCAAGAAGACACAGCCTTACAGAAGC
rJMFF039O19+ GACAATTTGGGGACGCAAGTTCTGCAACGACTGAGCAAGAAGACACAGCCTTACAGAAGC
rJMFF041I22+ AAGC
____________________________________________________________
consensus GACAATTTGGGGACGCAAGTTCTGCAACGACTGAGCAAGAAGACACAGCCTTACAGAAGC
. : . : . : . : . : . :
rJMSF029D15+ TCATCCTAAAGCCATTGAAGGAAATCTTTCAACGTATTGTTCTTGGGTTTTTGTTTTGGC
rJMFF039O19+ TCATCCTAAAGCCACTGAAGGAAATCTTTCAACGTATTGTTCTTGGGTTTTTGTTTTGGC
rJMFF041I22+ TCATCCTAAAGCCATTGAAGGAAATCTTTCAACGTATTGTTCTTGGGTTTTTGTTTTGGC
____________________________________________________________
consensus TCATCCTAAAGCCATTGAAGGAAATCTTTCAACGTATTGTTCTTGGGTTTTTGTTTTGGC
. : . : . : . : . : . :
rJMSF029D15+ AAGCCAAACAGCCAGCTCGAATCGAATCCGTTCTGAAGAGTGTCTACATAAATTCTTCAA
rJMFF039O19+ AAGCCAAACAGCCAGCTCGAATCGAATCCGTTCTGAAGAGTGTCTACATAAATTCTTCAA
rJMFF041I22+ AAGCCAAACAGCCAGCTCGAATCGAATCCGTTCTGAAGAGTGTCTACATAAATTCTTCAA
____________________________________________________________
consensus AAGCCAAACAGCCAGCTCGAATCGAATCCGTTCTGAAGAGTGTCTACATAAATTCTTCAA
. : . : . : . : . : . :
rJMSF029D15+ ATGTAGACAATTATCTTATCGATTCAATAACTAGACCTGCAGCTGACCCTAATGCAGGAG
rJMFF039O19+ ATGTAGACAATTATCTTATCGATTCAATAACTAGACCTGCAGCTGACCCTAATGCAGGAG
rJMFF041I22+ ATGTAGACAATTATCTTATCGATTCAATAACTAGACCTGCAGCTGACCCTAATGCAGGAG
____________________________________________________________
consensus ATGTAGACAATTATCTTATCGATTCAATAACTAGACCTGCAGCTGACCCTAATGCAGGAG
. : . : . : . : . : . :
rJMSF029D15+ AGGTGTATTACAGGCTAATGACACGGTTCATGTCGAACCAGAGAAAGTACACTCTGGATG
rJMFF039O19+ AGGTGTATTACAGGCTAATGACACGGTTCATGTCGAACCAGAGAAAGTACACTCTGGATG
rJMFF041I22+ AGGTGTATTACAGGCTAATGACACGGTTCATGTCGAACCAGAGAAAGTACACTCTGGATG
____________________________________________________________
consensus AGGTGTATTACAGGCTAATGACACGGTTCATGTCGAACCAGAGAAAGTACACTCTGGATG
. : . : . : . : . : . :
rJMSF029D15+ CAGTCCTGAGCGAGCTGTCTTGCCCGTTGCTGTTGCTGTGGGGCGATTTGGACCCTTGGG
rJMFF039O19+ CAGTCCTGAGCGAGCTGTCTTGCCCGTTGCTGTTGCTGTGGGGCGATTTGGACCCTTGGG
rJMFF002B04+ G
rJMFF041I22+ CAGTCCTGAGCGAGCTGTCTTGCCCGTTGCTGTTGCTGTGGGGCGATTTGGACCCTTGGG
____________________________________________________________
consensus CAGTCCTGAGCGAGCTGTCTTGCCCGTTGCTGTTGCTGTGGGGCGATTTGGACCCTTGGG
. : . : . : . : . : . :
rJMSF029D15+ TGGGTCCTGCGAAGGCCAACCGAATCAAGGAGTTTTACCCAAATACTTTGCTGGTTAACC
rJMFF039O19+ TGGGTCCTGCGAAGGCCAACCGAATCAAGGAGTTTTACCCAAATACTTTGCTGGTTAACC
rJMFF002B04+ TGGGTCCTGCGAAGGCCAACCGAATCAAGGAGTTTTACCCAAATACTTTGCTGGTTAACC
rJMFF041I22+ TGGGTCCTGCGAAGGCCAACCGAATCAAGGAGTTTTACCCAAATACTTTGCTGGTTAACC
____________________________________________________________
consensus TGGGTCCTGCGAAGGCCAACCGAATCAAGGAGTTTTACCCAAATACTTTGCTGGTTAACC
. : . : . : . : . : . :
rJMSF029D15+ TGCAGGCGGGGCACTGTCCACACGATGAAGTTCCAGAACTGGTGAATAAGGCACTGCTGG
rJMFF039O19+ TGCAGGCGGGGCACTGTCCACACGATGAAGTTCCAGAACTGGTGAATAAGGCACTGCTGG
rJMFF002B04+ TGCAGGCGGGGCACTGTCCACACGATGAAGTTCCAGAACTGGTGAATAAGGCANTGCTGG
rJMFF041I22+ TGCAGGCGGGGCACTGTCCACACGATGAAGTTCCAGAACTGGTGAATAAGGCACTGCTGG
____________________________________________________________
consensus TGCAGGCGGGGCACTGTCCACACGATGAAGTTCCAGAACTGGTGAATAAGGCACTGCTGG
. : . : . : . : . : . :
rJMSF029D15+ ATTGGTTGTCAACTCTCAAGCCTTAGCTTCTTCTCCTTCTCTACAACAAGGAGGTTCAGT
rJMFF039O19+ ATTGGTTGTCAACTCTCAAGCCTTAGCTTCTTCTCCTTCTCTACAACAAGGAGGTTCAGT
rJMFF002B04+ ATTGGTTGTCAACTCTCAAGCCTTAGCTTCTTCTCCTTCTCTACAACAAGGAGGTTCAGT
rJMFF041I22+ ATTGGTTGTCAACTCTCAAGCCTTAGCTTCTTCTCCTTCTCTACAACAAGGAGGTTCAGT
____________________________________________________________
consensus ATTGGTTGTCAACTCTCAAGCCTTAGCTTCTTCTCCTTCTCTACAACAAGGAGGTTCAGT
. : . : . : . : . : . :
rJMSF029D15+ TCTATACAGCCACTGCGTTGCTTAGATGTACGTTCATGAGGTTCGCT-CGCTGTAATTGA
rJMFF039O19+ TCTATACAGCCACTGCGTTGCTTAGATGTACGTTCATGAGGTTCGCT-CGCTGTAATTGA
rJMFF002B04+ TCTATACAGCCACTGCGTTGCTTAGATGTACGTTCATGAGGTTCGCTCCGCTGTAATTGA
rJMFF041I22+ TCTATACAGCCACTGCGTTGCTTAGATGTACGTTCATGAGGTTCGCT-CGCTGTAATTGA
____________________________________________________________
consensus TCTATACAGCCACTGCGTTGCTTAGATGTACGTTCATGAGGTTCGCT-CGCTGTAATTGA
. : . : . : . : . : . :
rJMSF029D15+ ATTGTATATAAC
rJMFF039O19+ ATTGTATATAAC-TATATTCTTTAGCTTGATTATCAAGAAA
rJMFF002B04+ ATTGTATATAACATATATTCTTTAGCTTGATTATCAAGAAA
rJMFF041I22+ ATTGTATATAAC-TATATTCTTTAGCTTGATTATCAAGAAAAGCTTTTGGTTGGTTGTTC
____________________________________________________________
consensus ATTGTATATAAC-TATATTCTTTAGCTTGATTATCAAGAAAAGCTTTTGGTTGGTTGTTC