Contig 004089:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF029K03-                                                   GGCCACCAGCTTAGCGTGAG
                      ____________________________________________________________
consensus                                                     GGCCACCAGCTTAGCGTGAG
 
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JMSF011O21-                    AGTGAGGGAGACGAACAAAATCCCCGAGAGATTCACACACACATATACACA
JMSF014N04-                    AGTGAGGGAGACGAACAAAATCCCCGAGAGATTCACACACACATATACACA
rJMSF011O21+                   AGTGAGGGAGACGAACAAAATCCCCGAGAGATTCACACACACATATACACA
JMSF029K03-           AGCCGGGACAGTGAGGGAGACGAACAAAATCCCCGAGAGATTCACACACACATATACACA
JMFF041C20-                                                                ATACACA
                      ____________________________________________________________
consensus             AGCCGGGACAGTGAGGGAGACGAACAAAATCCCCGAGAGATTCACACACACATATACACA
 
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JMSF011O21-           GAGGAGCGTCTCGAAGAACTTGAAACCCTAA-CCCGCTTGATTGATTTCGATTGGGTATA
JMSF014N04-           GAGGAGCGTCTCGAAGAACTTGAAACCCTAA-CCCGCTTGATTGATTTCGATTGGGTATA
rJMSF011O21+          GAGGAGCGTCTCGAAGAACTTGAAACCCTAAGCCCGCTTGATTGATTTCGATTGGGTATA
JMSF029K03-           GAGGAGCGTCTCGAAGAACTTGAAACCCTAA-CCCGCTTGATTGATTTCGATTGGGTATA
JMFF041C20-           GAGGAGCGTCTCGAAGAACTTGAAACCCTAA-CCCGCTTGATTGATTTCGATTGGGTATA
                      ____________________________________________________________
consensus             GAGGAGCGTCTCGAAGAACTTGAAACCCTAA-CCCGCTTGATTGATTTCGATTGGGTATA
 
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JMSF011O21-           GGGTTGGGGATTTGGTTTTCCACGCAATTTAACATCGAATTGAATCCCTAGGAAGCGCAA
JMSF014N04-           GGGTTGGGGATTTGGTTTTCCACGCAATTTAACATCGAATTGAATCCCTAGGAAGCGCAA
rJMSF011O21+          GGGT                                                        
JMSF029K03-           GGGTTGGGGATTTGGTTTTCCACGCAATTTAACATCGAATTGAATCCCTAGGAAGCGCAA
JMFF041C20-           GGGTTGGGGATTTGGTTTTCCACGCAATTTAACATCGAATTGAATCCCTAGGAAGCGCAA
                      ____________________________________________________________
consensus             GGGTTGGGGATTTGGTTTTCCACGCAATTTAACATCGAATTGAATCCCTAGGAAGCGCAA
 
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JMSF011O21-           AAAAAAAA                                                    
JMSF014N04-           AAAAAAAA                                                    
JMSF029K03-           AAAAAAAA                                                    
JMFF041C20-           AAAAAAAAAAAAATGGCATTAAGATTTGCTCGGAGCTGCATCCAGTCGGTGCTGAAGATC
                      ____________________________________________________________
consensus             AAAAAAAAAAAAATGGCATTAAGATTTGCTCGGAGCTGCATCCAGTCGGTGCTGAAGATC
 
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JMFF041C20-           GTGAACTCGCTATTAGGGATGGTTGGGATCGCCATGATCATGTACGCCCTTTGGATGTTC
                      ____________________________________________________________
consensus             GTGAACTCGCTATTAGGGATGGTTGGGATCGCCATGATCATGTACGCCCTTTGGATGTTC
 
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JMFF041C20-           AGAGTTTGGCAGAAGCACATGGCCGGCCCCTCTCCTCCCCCCTTCTTTGGACCCAGTGAT
rJMSF014N04+                                                          GGACCCAGTGAT
rJMSF001O05+                                                          GGACCCAGTGAT
                      ____________________________________________________________
consensus             AGAGTTTGGCAGAAGCACATGGCCGGCCCCTCTCCTCCCCCCTTCTTTGGACCCAGTGAT
 
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JMFF041C20-           GCCCCTATCCCTTGGTTCATTTATACTATTCTTGGCCTGGGTATCACTTTATGTTTCATC
rJMSF014N04+          GCCCCTATCCCNTGGTTCATTTATACTATTTCTGGCCTGGGTATCACTTTATGTTTCATC
rJMSF001O05+          GCCCCTATCCCNTGGTTCATTTATACTATTCTTGGCCTGGGTATCACTTTATGTTTCATC
                      ____________________________________________________________
consensus             GCCCCTATCCCTTGGTTCATTTATACTATTCTTGGCCTGGGTATCACTTTATGTTTCATC
 
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JMFF041C20-           ACCTGCTCTGGTCATATTGCTGCAGAAACTGCTAATGGCTGCTGTCTGTATATCTACATC
rJMSF014N04+          ACCTGCTCTGGTCATATTGCTGCAGAAACTGCTAATGGCTGCTGTCTGTATATCTACATC
rJMSF001O05+          ACCTGCTCTGGTCATATTGCTGCAGAAACTGCTAATGGCTGCTGTCTGTATATCTACATC
                      ____________________________________________________________
consensus             ACCTGCTCTGGTCATATTGCTGCAGAAACTGCTAATGGCTGCTGTCTGTATATCTACATC
 
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JMFF041C20-           GTGTTTGTCTTTCTACTTCTCGTGTTGGAAGCTGCAGTGACGGTGGATGTTTTCTTAAAC
rJMSF014N04+          GTGTTTGTCTTTCTACTTCTCGTGTTGGAAGCTGCAGTGACGGTGGATGTTTTCTTAAAC
rJMSF001O05+          GTGTTTGTCTTTCTACTTCTCGTGTTGGAAGCTGCAGTGACGGTGGATGTTTTCTTAAAC
rJMFF041C20+                                                                 TAAAC
                      ____________________________________________________________
consensus             GTGTTTGTCTTTCTACTTCTCGTGTTGGAAGCTGCAGTGACGGTGGATGTTTTCTTAAAC
 
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JMFF041C20-           AATGACTGGGAAGAGGACTTTCCCGAGGATACAACCGGGAACTTCGATGATCTCAAAAGT
rJMSF014N04+          AATGACTGGGAAGAGGACTTTCCCGAGGATACAACCGGGAACTTCGATGATCTCAAAAGT
rJMSF001O05+          AATGACTGGGAAGAGGACTTTCCCGAGGATACAACCGGGAACTTCGATGATCTCAAAAGT
rJMFF041C20+          AATGACTGGGAAGAGGACTTTCCCGAGGATACAACCGGGAACTTCGATGATCTCAAAAGT
                      ____________________________________________________________
consensus             AATGACTGGGAAGAGGACTTTCCCGAGGATACAACCGGGAACTTCGATGATCTCAAAAGT
 
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JMFF041C20-           TTTGTTAATGACAACTTTGACCTGTGCAAATGGATTGGCTTGTCAGTGGTGGCCGTGCAG
rJMSF014N04+          TTTGTTAATGACAACTTTGACCTGTGCAAATGGATTGGCTTGTCAGTGGTGGCCGTGCAG
rJMSF001O05+          TTTGTTAATGACAACTTTGACCTGTGCAAATGGATTGGCTTGTCAGTGGTGGCCGTGCAG
rJMFF041C20+          TTTGTTAATGACAACTTTGACCTGTGCAAATGGATTGGCTTGTCAGTGGTGGCCGTGCAG
                      ____________________________________________________________
consensus             TTTGTTAATGACAACTTTGACCTGTGCAAATGGATTGGCTTGTCAGTGGTGGCCGTGCAG
 
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JMFF041C20-           GGACTGAGCGTGTTACTGTCAATGGTTCTC                              
rJMSF014N04+          GGACTGAGCGTGTTACTGTCAATGGTTCTCAAAGCTTTGGGACCACATCGCGAGAGATAC
rJMSF001O05+          GGACTGAGCGTGTTACTGTCAATGGTTCTCAAAGCTTTGGGACCACATCGCGAGAGATAC
rJMFF041C20+          GGACTGAGCGTGTTACTGTCAATGGTTCTCAAAGCTTTGGGACCACATCGCGAGAGATAC
                      ____________________________________________________________
consensus             GGACTGAGCGTGTTACTGTCAATGGTTCTCAAAGCTTTGGGACCACATCGCGAGAGATAC
 
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rJMSF014N04+          TATGAGAGTGATGATGATTACACTCCAGATGGAGCCCCGCTTTTGAAAAACTACGTCCCC
rJMSF001O05+          TATGAGAGTGATGATGATTACACTCCAGATGGAGCCCCGCTTTTGAAAAACTACGTCCCC
rJMFF041C20+          TATGAGAGTGATGATGATTACACTCCAGATGGAGCCCCGCTTTTGAAAAACTACGTCCCC
                      ____________________________________________________________
consensus             TATGAGAGTGATGATGATTACACTCCAGATGGAGCCCCGCTTTTGAAAAACTACGTCCCC
 
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rJMSF014N04+          CAAACTTCATACGTTGTTGGTGACCCCGTATATGGGTCCAAGAGCGATTCTTGGAATATC
rJMSF001O05+          CAAACTTCATACGTTGTTGGTGACCCCGTATATGGGTCCAAGAGCGATTCTTGGAATATC
rJMFF041C20+          CAAACTTCATACGTTGTTGGTGACCCCGTATATGGGTCCAAGAGCGATTCTTGGAATATC
                      ____________________________________________________________
consensus             CAAACTTCATACGTTGTTGGTGACCCCGTATATGGGTCCAAGAGCGATTCTTGGAATATC
 
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rJMSF014N04+          CGGATTAACAGCAAGGCAGCCAGATGAGCAAAATCTTCTCTAGATTATGGAGAATTC   
rJMSF001O05+          CGGATTAACAGCAAGGCAGCCAGATGAGCAAAATCTTCTCTAGATTATGGAGAATTCAGA
rJMFF041C20+          CGGATTAACAGCAAGGCAGCCAGATGAGCAAAATCTTCTCTAGATTATGGAGAATTCAGA
                      ____________________________________________________________
consensus             CGGATTAACAGCAAGGCAGCCAGATGAGCAAAATCTTCTCTAGATTATGGAGAATTCAGA
 
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rJMSF001O05+          TTGGCGCCGAACTTGTACAAGGTTGGAGATGGATATTAGCAGGCTTTCGATTTGGTCGTA
rJMFF041C20+          TTGGCGCCGAACTTGTACAAGGTTGGAGATGGATATTAGCAGGCTTTCGATTTGGTCGTA
                      ____________________________________________________________
consensus             TTGGCGCCGAACTTGTACAAGGTTGGAGATGGATATTAGCAGGCTTTCGATTTGGTCGTA
 
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rJMSF001O05+          GGATTCATGGTAATANATATGCAGTTAATGTATATTCTCCCCATCCAC            
rJMFF041C20+          GGATTCAT-GTAATATATATGCAGTTAATGTATATTCTCCCCATCCACTAAACCTTTTAT
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consensus             GGATTCATGGTAATATATATGCAGTTAATGTATATTCTCCCCATCCACTAAACCTTTTAT
 
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rJMFF041C20+          TTTGGTCTATGTTGTCACTGCAAATGACATGTAAGTCTTATGAAGATAATATGTAGATCT
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consensus             TTTGGTCTATGTTGTCACTGCAAATGACATGTAAGTCTTATGAAGATAATATGTAGATCT
 
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rJMFF041C20+          ACATTCTACAAATGCCGCTTCTTGTTTGGCAATTGTTATAATGCCAGATTTTTGTTCAAT
                      ____________________________________________________________
consensus             ACATTCTACAAATGCCGCTTCTTGTTTGGCAATTGTTATAATGCCAGATTTTTGTTCAAT