Contig 004088:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041A21Sequence215000287 (26)669004088 (3)emb|CAC93946.1|1e-04lacZ alpha peptide [Cloning vector pSET152] gb|ADB65775.1| lacZ alpha peptide [C
JMFF041C13Sequence659005230 (3)gb|EYU19975.1|1e-73hypothetical protein MIMGU_mgv1a010541mg [Erythranthe guttata]643004088 (3)emb|CAC93946.1|1e-04lacZ alpha peptide [Cloning vector pSET152] gb|ADB65775.1| lacZ alpha peptide [C
JMFF041G15Sequence396000287 (26)dbj|BAE32324.1|5e-19unnamed protein product [Mus musculus] dbj|BAE29008.1| unnamed protein product [670004088 (3)emb|CAC93946.1|1e-04lacZ alpha peptide [Cloning vector pSET152] gb|ADB65775.1| lacZ alpha peptide [C

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF041G15+ AATTTAAGCCAATAAATTTTA
rJMFF041A21+ ATAAATTTTA
                      ____________________________________________________________
consensus AATTTAAGCCAATAAATTTTA
 
. : . : . : . : . : . :
rJMFF041G15+ AAACTTTAAAAAGTAGAAACAATTTGAATGAAANACATATACTACCAAAAGTAACTCAAG
rJMFF041C13+ CTTTAAAAAGTAGAAACAATTTGAATGAAAAACATATACTACCAAAAGTAACTCAAG
rJMFF041A21+ AACCTTTAAAAAGTAGAAACAATTTGAATGAAAAACATATACTACCAAAAGTAACTCAAG
                      ____________________________________________________________
consensus AACCTTTAAAAAGTAGAAACAATTTGAATGAAAAACATATACTACCAAAAGTAACTCAAG
 
. : . : . : . : . : . :
rJMFF041G15+ AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
rJMFF041C13+ AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
rJMFF041A21+ AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
                      ____________________________________________________________
consensus AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
 
. : . : . : . : . : . :
rJMFF041G15+ AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCAGATATGTGCGCCACTACAA
rJMFF041C13+ AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCTG-CATGTGCGCCACTACAA
rJMFF041A21+ AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCTG-CATGTGCGCCACTACAA
                      ____________________________________________________________
consensus AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCTG-CATGTGCGCCACTACAA
 
. : . : . : . : . : . :
rJMFF041G15+ AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
rJMFF041C13+ AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
rJMFF041A21+ AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
                      ____________________________________________________________
consensus AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
 
. : . : . : . : . : . :
rJMFF041G15+ AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
rJMFF041C13+ AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
rJMFF041A21+ AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
                      ____________________________________________________________
consensus AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
 
. : . : . : . : . : . :
rJMFF041G15+ GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
rJMFF041C13+ GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
rJMFF041A21+ GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
                      ____________________________________________________________
consensus GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
 
. : . : . : . : . : . :
rJMFF041G15+ ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
rJMFF041C13+ ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
rJMFF041A21+ ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
                      ____________________________________________________________
consensus ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
 
. : . : . : . : . : . :
rJMFF041G15+ GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
rJMFF041C13+ GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
rJMFF041A21+ GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
                      ____________________________________________________________
consensus GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
 
. : . : . : . : . : . :
rJMFF041G15+ CG
rJMFF041C13+ CG
rJMFF041A21+ CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 
. : . : . : . : . : . :
rJMFF041A21+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 
. : . : . : . : . : . :
rJMFF041A21+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGCTTGATATCGAATTC
                      ____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGCTTGATATCGAATTC