Contig 004088:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041A21Sequence215000287 (26)669004088 (3)emb|CAC93946.1|1e-04lacZ alpha peptide [Cloning vector pSET152] gb|ADB65775.1| lacZ alpha peptide [C
JMFF041C13Sequence659005230 (3)gb|EYU19975.1|1e-73hypothetical protein MIMGU_mgv1a010541mg [Erythranthe guttata]643004088 (3)emb|CAC93946.1|1e-04lacZ alpha peptide [Cloning vector pSET152] gb|ADB65775.1| lacZ alpha peptide [C
JMFF041G15Sequence396000287 (26)dbj|BAE32324.1|5e-19unnamed protein product [Mus musculus] dbj|BAE29008.1| unnamed protein product [670004088 (3)emb|CAC93946.1|1e-04lacZ alpha peptide [Cloning vector pSET152] gb|ADB65775.1| lacZ alpha peptide [C

Alignment

This contig is upended


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rJMFF041G15+                                                 AATTTAAGCCAATAAATTTTA
rJMFF041A21+                                                            ATAAATTTTA
                      ____________________________________________________________
consensus                                                    AATTTAAGCCAATAAATTTTA
 
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rJMFF041G15+          AAACTTTAAAAAGTAGAAACAATTTGAATGAAANACATATACTACCAAAAGTAACTCAAG
rJMFF041C13+             CTTTAAAAAGTAGAAACAATTTGAATGAAAAACATATACTACCAAAAGTAACTCAAG
rJMFF041A21+          AACCTTTAAAAAGTAGAAACAATTTGAATGAAAAACATATACTACCAAAAGTAACTCAAG
                      ____________________________________________________________
consensus             AACCTTTAAAAAGTAGAAACAATTTGAATGAAAAACATATACTACCAAAAGTAACTCAAG
 
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rJMFF041G15+          AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
rJMFF041C13+          AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
rJMFF041A21+          AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
                      ____________________________________________________________
consensus             AAGAAATAGAAAAACTAAGTAGATTTATAACCATTAAATTATTTGATAATTGGAAATGAA
 
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rJMFF041G15+          AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCAGATATGTGCGCCACTACAA
rJMFF041C13+          AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCTG-CATGTGCGCCACTACAA
rJMFF041A21+          AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCTG-CATGTGCGCCACTACAA
                      ____________________________________________________________
consensus             AATCCCTAAAGATTTAGTAATAGAAGGGAAATTTTTAACCTG-CATGTGCGCCACTACAA
 
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rJMFF041G15+          AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
rJMFF041C13+          AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
rJMFF041A21+          AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
                      ____________________________________________________________
consensus             AATTAAAAACAAGACACATGCTGGATGCATCTGTAAATAATATAACCAATAAGATTTTAG
 
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rJMFF041G15+          AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
rJMFF041C13+          AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
rJMFF041A21+          AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
                      ____________________________________________________________
consensus             AAATTAAGGTTAGATGGGGAACTCTTACAAATAAATAAGAAAACATTCAAAATAAGAAGA
 
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rJMFF041G15+          GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
rJMFF041C13+          GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
rJMFF041A21+          GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
                      ____________________________________________________________
consensus             GACAAGGATATAAAAGGCAATTCAAAAAGAAGAAATAGGAATGGCCACTAAATATGTAAA
 
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rJMFF041G15+          ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
rJMFF041C13+          ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
rJMFF041A21+          ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
                      ____________________________________________________________
consensus             ACATCAACTTCCACAGAACTCGACGGTATCGATAAGCTTGATATCAAATTCCTGCAGCCC
 
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rJMFF041G15+          GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
rJMFF041C13+          GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
rJMFF041A21+          GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
                      ____________________________________________________________
consensus             GGGCATTTTATGCGGTGTGAAATACCGCACAGATGCGTAAGGAGAAAATACCGCATCAGG
 
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rJMFF041G15+          CG                                                          
rJMFF041C13+          CG                                                          
rJMFF041A21+          CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 
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rJMFF041A21+          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 
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rJMFF041A21+          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGCTTGATATCGAATTC
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGCTTGATATCGAATTC