| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018A16 | Sequence | 312 | 004087 (5) | ||||||||
| JMFF040N17 | Sequence | 565 | 001897 (6) | ref|XP_009596423.1| | 6e-50 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Nicotiana | 727 | 004087 (5) | gb|KDO80127.1| | 8e-26 | hypothetical protein CISIN_1g005066mg [Citrus sinensis] |
| JMSF008A20 | Sequence | 289 | 001897 (6) | 763 | 004087 (5) | gb|ACY30441.1| | 1e-36 | FtsH protease [Nicotiana tabacum] | |||
| JMSF046F03 | Sequence | 783 | 001897 (6) | ref|XP_009766871.1| | 3e-89 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Nicotiana | 682 | 004087 (5) | gb|KDO80127.1| | 2e-27 | hypothetical protein CISIN_1g005066mg [Citrus sinensis] |
| JMSF047H20 | Sequence | 754 | 004087 (5) | gb|KDO80127.1| | 3e-41 | hypothetical protein CISIN_1g005066mg [Citrus sinensis] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF047H20+ TCATTTTTGGAGAAAATGA
____________________________________________________________
consensus TCATTTTTGGAGAAAATGA
. : . : . : . : . : . :
rJMSF046F03+ CCCGAGCTATGGT
rJMSF047H20+ GGTAACGTCCGGTGCGTCTAGCGATCTCCAGAAGGCTACAAATCTTGCCCGAGCTATGGT
rJMSF008A20+ GGTAACGTCCGGTGCGTCTAGCGATCTCCAGAAGGCTACAAATCTTGCCCGAGCTATGGT
rJMFF040N17+ TATGGT
____________________________________________________________
consensus GGTAACGTCCGGTGCGTCTAGCGATCTCCAGAAGGCTACAAATCTTGCCCGAGCTATGGT
. : . : . : . : . : . :
rJMSF046F03+ AACGAAGTACGGTATGAGCAAAGAAGTTGGCGTTGTCACACACAACTACGACGATAATGG
rJMSF047H20+ AACGAAGTACGGTATGAGCAAAGAAGTTGGCGTTGTCACACACAACTACGACGATAATGG
rJMSF008A20+ AACGAAGTACGGTATGAGCAAAGAAGTTGGCGTTGTCACACACAACTACGACGATAATGG
rJMFF040N17+ AACGAAGTACGGTATGAGCAAAGAAGTTGGCGTTGTCACACACAACTACGACGATAATGG
____________________________________________________________
consensus AACGAAGTACGGTATGAGCAAAGAAGTTGGCGTTGTCACACACAACTACGACGATAATGG
. : . : . : . : . : . :
rJMSF046F03+ GAAGAGCATGAGCACCGAGACGAGGCTCCTCATCGAGAAAGAAGTAAGAGAATTTTTGGA
rJMSF047H20+ GAAGAGCATGAGCACCGAGACGAGGCTCCTCATCGAGAAAGAAGTAAGAGAATTTTTGGA
rJMSF008A20+ GAAGAGCATGAGCACCGAGACGAGGCTCCTCATTGAGAAAGAAGTAAGAGAATTTTTGGA
rJMFF040N17+ GAAGAGCATGAGCACCGAGACGAGGCTCCTCATCGAGAAAGAAGTAAGAGAATTTTTGGA
____________________________________________________________
consensus GAAGAGCATGAGCACCGAGACGAGGCTCCTCATCGAGAAAGAAGTAAGAGAATTTTTGGA
. : . : . : . : . : . :
rJMSF046F03+ CAAGGCTTATAACAATGCCAAGACCATCCTCACCACACACAACAAAGAACTCCACGCTCT
rJMSF047H20+ CAAGGCTTATAACAATGCCAAGACCATCCTCACCACACACAACAAAGAACTCCACGCTCT
rJMSF008A20+ CAAGGCTTATAACAATGCCAAGACCATCCTCACCACACACAACAAAGAACTCCACGCTCT
rJMFF040N17+ CAAGGCTTATAACAATGCCAAGACCATCCTCACCACACACAACAAAGAACTCCACGCTCT
____________________________________________________________
consensus CAAGGCTTATAACAATGCCAAGACCATCCTCACCACACACAACAAAGAACTCCACGCTCT
. : . : . : . : . : . :
rJMSF046F03+ CGCCAATGCATTGCTCGAGCACGAGACACTCACGGGTAGCCAGATAAAGGTTCTACTCGC
rJMSF047H20+ CGCCAATGCATTGCTCGAGCACGAGACACTCACGGGTAGCCAGATAAAGGTTCTACTCGC
rJMSF008A20+ CGCCAATGCATTGCTCGAGCACGAGACACTCACGGGTAGCCAGATAAAGGTTCTACTCGC
rJMFF040N17+ CGCCAATGCATTGCTCGAGCACGAGACACTCACGGGTAGCCAGATAAAGGTTCTACTCGC
____________________________________________________________
consensus CGCCAATGCATTGCTCGAGCACGAGACACTCACGGGTAGCCAGATAAAGGTTCTACTCGC
. : . : . : . : . : . :
rJMSF046F03+ ACAGGTTAATTCTCAACAAACCCACCAACAGCAACAGCTGTTCCCCGACACCGTCCAGAA
rJMSF047H20+ ACAGGTTAATTCTCAACAAACCCACCAACAGCAACAGCTGTTCCCCGACACCGTCCAGAA
rJMSF008A20+ ACAGGTTAATTCTCAACAAACCCACCAACAGCAACAGCTGTTCCCCGACACCGTCCAGAA
rJMFF040N17+ ACAGGTTAATTCTCAACAAACCCACCAACAGCAACAGCTGTTCCCCGACACCGTCCAGAA
____________________________________________________________
consensus ACAGGTTAATTCTCAACAAACCCACCAACAGCAACAGCTGTTCCCCGACACCGTCCAGAA
. : . : . : . : . : . :
rJMSF046F03+ CACTTCAAAATCAAATCAAGCCCCGCCCCCACCCCCGACTCCTAGTCCAGCCGCTTCTGC
rJMSF047H20+ CACTTCAAAATCAAATCAAGCCCCGCCCCCACCCCCGACTCCTAGTCCAGCCGCTTCTGC
rJMSF008A20+ CACTTCAAAATCAAATCAAGCCCCGCCCCCACCCCCGACTCCTAGTCCAGCCGCTTCTGC
rJMFF040N17+ CACTTCAAAATCAAATCAAGCCCCGCCCCCACCCCCGACTCCTAGTCCAGCCGCTTCTGC
____________________________________________________________
consensus CACTTCAAAATCAAATCAAGCCCCGCCCCCACCCCCGACTCCTAGTCCAGCCGCTTCTGC
. : . : . : . : . : . :
rJMSF046F03+ TGCGGCTGCCGCAGCGGCAGCCGCCGCTGCCGCTGCCACCGCCGCAGCCAAAAGTAAAGG
rJMSF047H20+ TGCGGCTGCCGCAGCGGCAGCCGCCGCTGCCGCTGCCACCGCCGCAGCCAAAAGTAAAGG
rJMSF008A20+ TGCGGCTGCCGCAGCGGCAGCCGCCGCTGCCGCTGCCACCGCCGCAGCCAAAAGTAAAGG
rJMFF018A16+ GCCGCAGCCAAAAGTAAAGG
rJMFF040N17+ TGCGGCTGCCGCAGCGGCAGCCGCCGCTGCCGCTGCCACCGCCGCAGCCAAAAGTAAAGG
____________________________________________________________
consensus TGCGGCTGCCGCAGCGGCAGCCGCCGCTGCCGCTGCCACCGCCGCAGCCAAAAGTAAAGG
. : . : . : . : . : . :
rJMSF046F03+ CATTGCCCCAGTTGGATCTTAGGCACCTCGATAATTTTCACATTGAATGTGCAGCACAAT
rJMSF047H20+ CATTGCCCCAGTTGGATCTTAGGCACCTCGATAATTTTCACATTGAATGTGCAGCACAAT
rJMSF008A20+ CATTGCCCCAGTTGGATCTTAGGCACCTCGATAATTTTCACATTGAATGTGCAGCACAAT
rJMFF018A16+ CATTGCCCCAGTTGGATCTTAGGCACCTCGATAATTTTCACATTGAATGTGCAGCACAAT
rJMFF040N17+ CATTGCCCCAGTTGGATCTTAGGCACCTCGATAATTTTCACATTGAATGTGCAGCACAAT
____________________________________________________________
consensus CATTGCCCCAGTTGGATCTTAGGCACCTCGATAATTTTCACATTGAATGTGCAGCACAAT
. : . : . : . : . : . :
rJMSF046F03+ ATAGTAGAGACTAGTTTTCAGCATGCCTTTTACCTCGGGACAATCATTGCTCTCCTCCTT
rJMSF047H20+ ATAGTAGAGACTAGTTTTCAGCATGCCTTTTACCTCGGGACAATCATTGCTCTCCTCCTT
rJMSF008A20+ ATAGTAGAGACTAGTTTTCAGCATGCCTTTTACCTCGGGACAATCATTGCTCTCCTCCTT
rJMFF018A16+ ATAGTAGAGACTAGTTTTCAGCATGCCTTTTACCTCGGGACAATCATTGCTCTCCTCNTT
rJMFF040N17+ ATAGTAGAGACTAGTTTTCAGCATGCCTTTTACCTCGGGACAATCATTGCTCTCCTCCTT
____________________________________________________________
consensus ATAGTAGAGACTAGTTTTCAGCATGCCTTTTACCTCGGGACAATCATTGCTCTCCTCCTT
. : . : . : . : . : . :
rJMSF046F03+ CTTGTTGGGTATAAGGTAGAGAGAATCTGTGTATGGGGTGAGTTAGGACATCAATGGAAG
rJMSF047H20+ CTTGTTGGGTATAAGGTAGAGAGAATCTGTGTATGGGGTGAGTTAGGACATCAATGGAAG
rJMSF008A20+ CTTGTTGGGTATAAGGTAGAGAGAATCTGTGTATGGGGTGAGTTAGGACATCAATGGAAG
rJMFF018A16+ CTTGTTGGGTATAAGGTAGAGAGAATCNGTGTATGGGGTGAGTTAGGACATCAATGGAAG
rJMFF040N17+ CTTGTTGGGTATAAGGTAGAGAGAATCTGCGTATGGGGTGAGTTAGGACATCAATGGAAG
____________________________________________________________
consensus CTTGTTGGGTATAAGGTAGAGAGAATCTGTGTATGGGGTGAGTTAGGACATCAATGGAAG
. : . : . : . : . : . :
rJMSF046F03+ TTGTAGCAACAGATACAAAGAAGTGAGCCTTCGTGTTGTCAATTATTAGTACT-CACGTT
rJMSF047H20+ TTGTAGCAACAGATACAAAGAAGTGAGCCTTCGTGTTGTCAATTATTAGTACT-CACGTT
rJMSF008A20+ TTGTAGCAACAGATACAAAGAAGTGAGCCTTCGTGTTGTCAATTATTAGTACT-CACGTT
rJMFF018A16+ TTGTAGCAACAGATACAAAGAAGTGAGCCTTCGTGTTGTCAATTATTAGTACTCCACGTT
rJMFF040N17+ TTGTAGCAACAGATACAAAGAAGTGAGCCTTCGTGTTGTCAATTATTAGTACT-CACGTT
____________________________________________________________
consensus TTGTAGCAACAGATACAAAGAAGTGAGCCTTCGTGTTGTCAATTATTAGTACT-CACGTT
. : . : . : . : . : . :
rJMSF046F03+ TAACTCTGTT
rJMSF047H20+ TAACTCTGTT
rJMSF008A20+ TAACTCTGTTTGTCAAGTGTAACTTATACT
rJMFF018A16+ TAACTCTGTTNGTCAAGTGTAACTTATACTTAAATCT
rJMFF040N17+ TAACTCTGTTTGTCAAGTGTAACTTATACTTAAATCTCCGTTGGTCCATTTCTCCGCCAA
____________________________________________________________
consensus TAACTCTGTTTGTCAAGTGTAACTTATACTTAAATCTCCGTTGGTCCATTTCTCCGCCAA