| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040B11 | Sequence | 496 | 006644 (3) | ref|XP_010092630.1| | 1e-76 | hypothetical protein L484_006392 [Morus notabilis] gb|EXB51819.1| hypothetical p | 706 | 004085 (3) | ref|XP_009606927.1| | 2e-43 | PREDICTED: uncharacterized protein LOC104101191 isoform X2 [Nicotiana tomentosi |
| JMSF039I23 | Sequence | 692 | 006644 (3) | ref|XP_004232807.1| | 365 | PREDICTED: uncharacterized protein LOC101255950 [Solanum lycopersicum] | 758 | 004085 (3) | ref|XP_010092630.1| | 3e-48 | hypothetical protein L484_006392 [Morus notabilis] gb|EXB51819.1| hypothetical p |
| JMSF041I23 | Sequence | 309 | 004085 (3) | ref|XP_009606926.1| | 6e-20 | PREDICTED: uncharacterized protein LOC104101191 isoform X1 [Nicotiana tomentosi | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF039I23+ CTGGAAA
____________________________________________________________
consensus CTGGAAA
. : . : . : . : . : . :
rJMSF039I23+ CTACAATATGCTGCCTCTCGGCCCACAACAGTCTTCAATGCCCAGTTTCCTTGCTCCCGG
____________________________________________________________
consensus CTACAATATGCTGCCTCTCGGCCCACAACAGTCTTCAATGCCCAGTTTCCTTGCTCCCGG
. : . : . : . : . : . :
rJMSF039I23+ GACCTCAAATCTTGCCTCGTATAGGGGAGCTGACGACTTCTTTACTGAAGAAATCCGGTT
rJMFF040B11+ CCTCGTATAGGGGAGCTGACGACTTCTTTACTGAAGAAATCCGGTT
____________________________________________________________
consensus GACCTCAAATCTTGCCTCGTATAGGGGAGCTGACGACTTCTTTACTGAAGAAATCCGGTT
. : . : . : . : . : . :
rJMSF039I23+ GAGAAGCCACGAGATGCTCGGAAACGAAGACATGCAGCAGCTTCTTCACGTTTTCAACTC
rJMFF040B11+ GAGAAGCCACGAGATGCTCGGAAACGAAGACATGCAGCAGCTTCTTCACGTTTTCAACTC
____________________________________________________________
consensus GAGAAGCCACGAGATGCTCGGAAACGAAGACATGCAGCAGCTTCTTCACGTTTTCAACTC
. : . : . : . : . : . :
rJMSF041I23+ CTC
rJMSF039I23+ GGGTGGCAGTGCCCATCATCCTTCTGCTAATGTCACGGAAGACAGTTATCCTTACGCCTC
rJMFF040B11+ GGGTGGCAGTGCCCATCATCCTTCTGCTAATGTCACGGAAGACAGTTATCCTTACGCCTC
____________________________________________________________
consensus GGGTGGCAGTGCCCATCATCCTTCTGCTAATGTCACGGAAGACAGTTATCCTTACGCCTC
. : . : . : . : . : . :
rJMSF041I23+ ACAGCAGCAGGTGCCCGATATGTCTTCGGCCTTTGGATTCAACGAGGATCGTTCACGTCC
rJMSF039I23+ ACAGCAGCAGGTGCCCGATATGTCTTCGGCCTTTGGATTCAACGAGGATCGTTCACGTCC
rJMFF040B11+ ACAGCAGCAGGTGCCCGATATGTCTTCGGCCTTTGGATTCAACGAGGATCGTTCACGTCC
____________________________________________________________
consensus ACAGCAGCAGGTGCCCGATATGTCTTCGGCCTTTGGATTCAACGAGGATCGTTCACGTCC
. : . : . : . : . : . :
rJMSF041I23+ TGGCAAAGCTGTTGTCGGGTGGCTCAAGCTTAAAGCTGCCCTGAGATGGGGCATCTTCAT
rJMSF039I23+ TGGCAAAGCTGTTGTCGGGTGGCTCAAGCTTAAAGCTGCCCTGAGATGGGGCATCTTCAT
rJMFF040B11+ TGGCAAAGCTGTTGTCGGGTGGCTCAAGCTTAAAGCTGCCCTGAGATGGGGCATCTTCAT
____________________________________________________________
consensus TGGCAAAGCTGTTGTCGGGTGGCTCAAGCTTAAAGCTGCCCTGAGATGGGGCATCTTCAT
. : . : . : . : . : . :
rJMSF041I23+ CCGAAAGAAAGCTGCTGAAAGGAGAGCACAAATCGTCGAATT--ATGACTTGTAGCTGTA
rJMSF039I23+ CCGAAAGAAAGCTGCTGAAAGGAGAGCACAAATCGTCGAATT--ATGACTTGTAGCTGTA
rJMFF040B11+ CCGAAAGAAAGCTGCTGAAAGGAGAGCACAAATCGTCGAATTGGATGACTTGTAGCTGTA
____________________________________________________________
consensus CCGAAAGAAAGCTGCTGAAAGGAGAGCACAAATCGTCGAATT--ATGACTTGTAGCTGTA
. : . : . : . : . : . :
rJMSF041I23+ GCTATGCCATTGACANAAAAGANCGATNTGGTTTTGGGACAATCCCTCCTAGTATCCAAG
rJMSF039I23+ GCTATGCCATTGACAAAAAAGATCGATCTGGTTTTGGGACAATCCCTCCTAGTATCCAAG
rJMFF040B11+ GCTATGCCATTGACAAAAAAGATCGATCTGGTTTTGGGACAATCCCTCCTAGTATCCAAG
____________________________________________________________
consensus GCTATGCCATTGACAAAAAAGATCGATCTGGTTTTGGGACAATCCCTCCTAGTATCCAAG
. : . : . : . : . : . :
rJMSF041I23+ AACTATGATACATATGCCATACATTCCCCCNGCNTGTACAGAGAATACTNTTTGAATAGG
rJMSF039I23+ AACTATGATACATATGCCATACATTCCCCCTGCCTGTACAGAGAATACTCTTTGAATAGG
rJMFF040B11+ AACTATGATACATATGCCATACATTCCCCCTGCCTGTACAGAGAATACTCTTTGAATAGG
____________________________________________________________
consensus AACTATGATACATATGCCATACATTCCCCCTGCCTGTACAGAGAATACTCTTTGAATAGG
. : . : . : . : . : . :
rJMSF041I23+ TGAAAATA
rJMSF039I23+ TGAAAATAATGAAAGCGCGTTTGAGTTTTTCAGCGCTGTCGCCCGCATTTGTTAACCAGA
rJMFF040B11+ TGAAAATAATGAAAGCGCGTTTGAGTTTTTCAGCGCTGTCGCCCGCATTTGTTAACCAGA
____________________________________________________________
consensus TGAAAATAATGAAAGCGCGTTTGAGTTTTTCAGCGCTGTCGCCCGCATTTGTTAACCAGA
. : . : . : . : . : . :
rJMSF039I23+ GGTGTTTTTTCACCATAAGCTCTCAGGAGATTGGTGGATCTTGGAAAACAAACAATTCAA
rJMFF040B11+ GGTGTTTTTTCACCATAAGCTCTCAGGAGATTGGTGGATCTTGGAAAACAAACAATTCAA
____________________________________________________________
consensus GGTGTTTTTTCACCATAAGCTCTCAGGAGATTGGTGGATCTTGGAAAACAAACAATTCAA
. : . : . : . : . : . :
rJMSF039I23+ TGACTGCTTACACCCTCAACTTCAGGATTGCAGGGTTTTAATTTACTTTTGTTTTGTTTT
rJMFF040B11+ TGACTGCTTACACCCTCAACTTCAGGATTGCAGGGTTTTAATTTACTTTTGTTTTGTTTT
____________________________________________________________
consensus TGACTGCTTACACCCTCAACTTCAGGATTGCAGGGTTTTAATTTACTTTTGTTTTGTTTT
. : . : . : . : . : . :
rJMSF039I23+ CTGTTCCTTAATTTTCCTAGAGAAATTTAAGGT
rJMFF040B11+ CTGTTCCTTAATTTTCCTAGAGAAATTTAAGGTTGACTGGCTTTACACTTACTGTATTAT
____________________________________________________________
consensus CTGTTCCTTAATTTTCCTAGAGAAATTTAAGGTTGACTGGCTTTACACTTACTGTATTAT