Contig 004084:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018O14Sequence713004084 (7)emb|CDP15171.1|1e-17unnamed protein product [Coffea canephora]
JMFF030A13Sequence299003887 (8)385004084 (7)
JMFF040A20Sequence471003887 (8)713004084 (7)
JMFF047G24Sequence376003887 (8)295004084 (7)
JMSF012E08Sequence291003887 (8)747004084 (7)emb|CDP15171.1|3e-23unnamed protein product [Coffea canephora]
JMSF029C05Sequence655003887 (8)ref|XP_006358519.1|9e-14PREDICTED: transcription factor PIF3-like [Solanum tuberosum]644004084 (7)emb|CDP15171.1|2e-17unnamed protein product [Coffea canephora]
JMSF048I11Sequence636003887 (8)ref|XP_006358519.1|6e-09PREDICTED: transcription factor PIF3-like [Solanum tuberosum]653004084 (7)emb|CDP15171.1|2e-17unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF012E08+                                           ATGGGTTTTGGTATGGGTATACATGAA
                      ____________________________________________________________
consensus                                              ATGGGTTTTGGTATGGGTATACATGAA
 
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rJMSF012E08+          ATGAACGGTAGATCCCCTGGATATCCTTTATTTCCAATATCCCCTATGCAACGAGTACAA
rJMFF018O14+                                           CCAATATCCCCTATGCAACGAGTACAA
                      ____________________________________________________________
consensus             ATGAACGGTAGATCCCCTGGATATCCTTTATTTCCAATATCCCCTATGCAACGAGTACAA
 
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rJMSF029C05+                           TTTCCGGGCCTAGTACCTTTCCAGGAATAGCTGCATCTAATTT
rJMSF012E08+          CTGTCTT-CCCTGCCATTTTCCGGGCCTAGTACCTTTCCAGGAATAGCTGCATCTAATTT
rJMSF048I11+                           TTTCCGGGCCTAGTACCTTTCCAGGAATAGCTGCATCTAATTT
rJMFF018O14+          CTGTCTTNCCCTGCCATTTTCCGGGCNTAGTACCTTTCCAGGAATAGCTGCATCTAATTT
                      ____________________________________________________________
consensus             CTGTCTTNCCCTGCCATTTTCCGGGCCTAGTACCTTTCCAGGAATAGCTGCATCTAATTT
 
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rJMSF029C05+          TCCAGTTTTTGGACATCCCGGTCTAGGTATTCCCATATCAATCCCAAAAGCACCTACCAT
rJMSF012E08+          TCCAGTTTTTGGACATCCCGGTCTAGGTATTCCCATATCAATCCCAAAAGCACCTACCAT
rJMSF048I11+          TCCAGTTTTTGGACATCCCGGTCTAGGTATTCCCATATCAATCCCAAAAGCACCTACCAT
rJMFF018O14+          TCCAGTTTTTGGACATCCCGGTCTAGGTATTCCCATATCAATCCCAAAAGCACCTACCAT
                      ____________________________________________________________
consensus             TCCAGTTTTTGGACATCCCGGTCTAGGTATTCCCATATCAATCCCAAAAGCACCTACCAT
 
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rJMSF029C05+          TTCTAAATCAGGGCAACCTGCCCGTAGTTCAGCTGTGGGTATGGGTGCCTCAAGGATGGG
rJMSF012E08+          TTCTAAATCAGGGCAACCTGCCCGTAGTTCAGCTGTGGGTATGGGTGCCTCAAGGATGGG
rJMSF048I11+          TTCTAAATCAGGGCAACCTGCCCGTAGTTCAGCTGTGGGTATGGGTGCCTCAAGGATGGG
rJMFF018O14+          TTCTAAATCAGGGCAACCTGCCCGTAGTTCAGCTGTGGGTATGGGTGCCTCAAGGATGGG
rJMFF040A20+                            TGCCCGTAGTTCAGCTGTGGGTATGGGTGCCTCAAGGATGGG
                      ____________________________________________________________
consensus             TTCTAAATCAGGGCAACCTGCCCGTAGTTCAGCTGTGGGTATGGGTGCCTCAAGGATGGG
 
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rJMSF029C05+          AATTCAAGTAGAAGT-CCCATGTACATCTGCTACATTGAAACCTGAGGATCTCGTAAAGA
rJMSF012E08+          AATTCAAGTAGAAGT-CCCATGTACATCTGCTACATTGAAACCTGAGGATCTCGTAAAGA
rJMSF048I11+          AATTCAAGTAGAAGT-CCCATGTACATCTGCTACATTGAAACCTGAGGATCTCGTAAAGA
rJMFF018O14+          AATTCAAGTAGAAGT-CCCATGTACATCTGCTACATTGAAACCTGAGGATCTCGTAAAGA
rJMFF040A20+          AATTCAAGTAGAAGTCCCCATGTACATCTGCTACATTGAAACCTGAGGATCTCGTAAAGA
                      ____________________________________________________________
consensus             AATTCAAGTAGAAGT-CCCATGTACATCTGCTACATTGAAACCTGAGGATCTCGTAAAGA
 
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rJMSF029C05+          CCAAGAGCTCACAACTGATGAACAATACCGACCCCAATCGATCAATAAATCAAACATCAT
rJMSF012E08+          CCAAGAGCTCACAACTGATGAACAATACCGACCCCAATCGATCAATAAATCAAACATCAT
rJMFF030A13+                                      CGACCCCAATCGATCAATAAATCAAACATCAT
rJMSF048I11+          CCAAGAGCTCACAACTGATGAACAATACCGACCCCAATCGATCAATAAATCAAACATCAT
rJMFF018O14+          CCAAGAGCTCACAACTGATGAACAATACCGACCCCAATCGATCAATAAATCAAACATCAT
rJMFF040A20+          CCAAGAGCTCACAACTGATGAACAATACCGACCCCAATCGATCAATAAATCAAACATCAT
                      ____________________________________________________________
consensus             CCAAGAGCTCACAACTGATGAACAATACCGACCCCAATCGATCAATAAATCAAACATCAT
 
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rJMSF029C05+          CTCAGAGGAAAGCGTAGTGGTTATTTCAGGAAAGATGACTAATTATGACAAAATGGTGCA
rJMSF012E08+          CTCAGAGGAAAGCGTAGTGGTTATTTCAGGAAAGATGACTAATTATGACAAAATGGTGCA
rJMFF030A13+          NTCAGAGGAAAGCGTAGTGGTTATTTCAGGAAAGATGANTAANTANGACAAAATGGTGCA
rJMSF048I11+          CTCAGAGGAAAGCGTAGTGGTTATTTCAGGAAAGATGACTAATTATGACAAAATGGTGCA
rJMFF018O14+          CTCAGAGGAAAGCGTAGTGGTTATTTCAGGAAAGATGACTAATTATGACAAAATGGTGCA
rJMFF040A20+          CTCAGAGGAAAGCGTAGTGGTTATTTCAGGAAAGATGACTAATTATGACAAAATGGTGCA
                      ____________________________________________________________
consensus             CTCAGAGGAAAGCGTAGTGGTTATTTCAGGAAAGATGACTAATTATGACAAAATGGTGCA
 
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rJMSF029C05+          AAATGGTGATCAACTACTTCATGATTGTGACAACCCAACCGTTAACTTCACGAGCTCAAC
rJMSF012E08+          AAATGGTGATCAACTACTTCATGATTGTGACAACCCAACCGTTAACTTCACGAGCTCAAC
rJMFF030A13+          AAATGGTGATCAANTANTTCATGATTGTGACAACCCAACCGTTAACTTCACGAGCTCAAC
rJMSF048I11+          AAATGGTGATCAACTACTTCATGATTGTGACAACCCAACCGTTAACTTCACGAGCTCAAC
rJMFF018O14+          AAATGGTGATCAACTACTTCATGATTGTGACAACCCAACCGTTAACTTCACGAGCTCAAC
rJMFF047G24+                                                         TCACGAGCTCAAC
rJMFF040A20+          AAATGGTGATCAACTACTTCATGATTGTGACAACCCAACCGTTAACTTCACGAGCTCAAC
                      ____________________________________________________________
consensus             AAATGGTGATCAACTACTTCATGATTGTGACAACCCAACCGTTAACTTCACGAGCTCAAC
 
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rJMSF029C05+          TGGCAGTGAAGCTGCTTCTGATTAGCAGTGGGCACTATATGATGTGATTAGTGAAAGGGA
rJMSF012E08+          TGGCAGTGAAGCTGCTTCTGATTAGCAGTGGGCACTATATGATGTGATTAGTGAAAGGGA
rJMFF030A13+          TGGCAGTGAAGCTGNTTNTGATTAGCAGTGGGCANTATATGATGNGATTAGTGAAAGGGA
rJMSF048I11+          TGGCAGTGAAGCTGCTTCTGATTAGCAGTGGGCACTATATGATGTGATTAGTGAAAGGGA
rJMFF018O14+          TGGCAGTGAAGCTGCTTCTGATTAGCAGTGGGCACTATATGGTGTGATTAGTGAAAGGGA
rJMFF047G24+          TGGCAGTGAAGCTGCTTCTGATTAGCAGTGGGCACTATATGGTGTGATTAGTGAAAGGGA
rJMFF040A20+          TGGCAGTGAAGCTGCTTCTGATTAGCAGTGGGCACTATATGATGTGATTAGTGAAAGGGA
                      ____________________________________________________________
consensus             TGGCAGTGAAGCTGCTTCTGATTAGCAGTGGGCACTATATGATGTGATTAGTGAAAGGGA
 
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rJMSF029C05+          CTGATTTTGGCACTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
rJMSF012E08+          CTGATTTTGGCACTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
rJMFF030A13+          CTGATTTTGGCANTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
rJMSF048I11+          CTGATTTTGGCACTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
rJMFF018O14+          CTGATTTTGGCACTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
rJMFF047G24+          CTGATTTTGGCACTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
rJMFF040A20+          CTGATTTTGGCACTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
                      ____________________________________________________________
consensus             CTGATTTTGGCACTATTAGTCCCTGCCTCCACTCAAAGGAGATTCAACGCCCTGTTAGAA
 
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rJMSF029C05+          TGAGGCTTTGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
rJMSF012E08+          TGAGGCTTTGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
rJMFF030A13+          TGAGGCTTNGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
rJMSF048I11+          TGAGGCTTTGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
rJMFF018O14+          TGAGGCTTTGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
rJMFF047G24+          TGAGGCTTTGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
rJMFF040A20+          TGAGGCTTTGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
                      ____________________________________________________________
consensus             TGAGGCTTTGTATTTGTACATTGATCATAACTTAGGCAGTTTGGGTGGATCCTTTTTCCT
 
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rJMSF029C05+          TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGATGTATAACCGAATT
rJMSF012E08+          TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGATGTATAACCGAATT
rJMFF030A13+          TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGANGTATAA       
rJMSF048I11+          TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGATGTATAACCGAATT
rJMFF018O14+          TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGATGTATAACCGAATT
rJMFF047G24+          TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGATGTATAACCGAATT
rJMFF040A20+          TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGATGTATAACCGAATT
                      ____________________________________________________________
consensus             TCCTCCTTCAGTATGATCTCTTCCCAGTGCTTTCATGTCCATCAGATGTATAACCGAATT
 
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rJMSF048I11+          TGTAATGAATA                                                 
rJMFF018O14+          TGTAATGAATAATGGCAGTGCAAAAGT                                 
rJMFF047G24+          TGTAATGAATAATGGCAGTGCAAAAGTTTATACATTTTCAGC                  
rJMFF040A20+          TGTAATGAATAATGGCAGTGCAAAAGTTTATACATTTTCAGCAGAATATGGTGTCTATAG
                      ____________________________________________________________
consensus             TGTAATGAATAATGGCAGTGCAAAAGTTTATACATTTTCAGCAGAATATGGTGTCTATAG
 
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rJMFF040A20+          TGTATGTTTATCTTTGCTTTGTTATAAGTGTGTGTTTTACCTGCCTTTCGGAGACTGGAA
                      ____________________________________________________________
consensus             TGTATGTTTATCTTTGCTTTGTTATAAGTGTGTGTTTTACCTGCCTTTCGGAGACTGGAA
 
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rJMFF040A20+          ATTCTCACATTGATGAAGACAATCAGCAGAAACATTCTTTGTCATGTCTATTATAATTCA
                      ____________________________________________________________
consensus             ATTCTCACATTGATGAAGACAATCAGCAGAAACATTCTTTGTCATGTCTATTATAATTCA