Contig 004082:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039F12Sequence535004082 (2)ref|XP_009803110.1|7e-73PREDICTED: PCTP-like protein [Nicotiana sylvestris]735004082 (2)emb|CDO97680.1|1e-95unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF039F12-                                                       TCTGATTTCTTCATC
                      ____________________________________________________________
consensus                                                          TCTGATTTCTTCATC
 
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rJMFF039F12-          ATATCATATAAAATATATTAGTTTCCTTTGCGTTTGTACAGTAGCAATAATCATGAATCA
                      ____________________________________________________________
consensus             ATATCATATAAAATATATTAGTTTCCTTTGCGTTTGTACAGTAGCAATAATCATGAATCA
 
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rJMFF039F12-          TGTTCAACAACATTGGTGGGACAAGCCAGCACTTGCTTTTTAAGGTTTTCAATTATCATA
                      ____________________________________________________________
consensus             TGTTCAACAACATTGGTGGGACAAGCCAGCACTTGCTTTTTAAGGTTTTCAATTATCATA
 
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rJMFF039F12-          ACCAATTTTGTATTCAGTCTATTCACGAAGCACTTGGGCAGCCATCCTGCTGGGTCTAGC
                      ____________________________________________________________
consensus             ACCAATTTTGTATTCAGTCTATTCACGAAGCACTTGGGCAGCCATCCTGCTGGGTCTAGC
 
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rJMFF039F12-          TGAACAACGTAAGTGACCATGCAAGAGTGGTCGGAAAGTTTCTCAACCACCCAGCCTGAC
                      ____________________________________________________________
consensus             TGAACAACGTAAGTGACCATGCAAGAGTGGTCGGAAAGTTTCTCAACCACCCAGCCTGAC
 
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rJMFF039F12-          TGCAACAGTAGGCCTCGGATTGCATTGTTTTGCTTTGGCTGCAATCCTGCTGCTATCTCT
                      ____________________________________________________________
consensus             TGCAACAGTAGGCCTCGGATTGCATTGTTTTGCTTTGGCTGCAATCCTGCTGCTATCTCT
 
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JMFF039F12+                                     CCTTGCAGCATCGATGGCATTAGCTACAGTCATG
rJMFF039F12-          TTTGGAAGAGAAGCCACTGCTACTACCCTTGCAGCATCGATGGCATTAGCTACAGTCATG
                      ____________________________________________________________
consensus             TTTGGAAGAGAAGCCACTGCTACTACCCTTGCAGCATCGATGGCATTAGCTACAGTCATG
 
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JMFF039F12+           AACTGTTGAGGAGAGACAGAATTTAGCAGCCAACGGCTCCGGAAAGTATGAAGCGAACCT
rJMFF039F12-          AACTGTTGAGGAGAGACAGAATTTAGCAGCCAACGGCTCCGGAAAGTATGAAGCGAACCT
                      ____________________________________________________________
consensus             AACTGTTGAGGAGAGACAGAATTTAGCAGCCAACGGCTCCGGAAAGTATGAAGCGAACCT
 
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JMFF039F12+           GTCCGGCGTTTCGATATCTCGACGCCGCCGTTATCTATGGCCAATATTTTCCATCCGCGG
rJMFF039F12-          GTCCGGCGTTTCGATATCTCGACGCCGCCGTTATCTATGGCCAATATTTTCCATCCGCGG
                      ____________________________________________________________
consensus             GTCCGGCGTTTCGATATCTCGACGCCGCCGTTATCTATGGCCAATATTTTCCATCCGCGG
 
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JMFF039F12+           TCGCCGGAGTCCGACGCCGACAGCAACTCCTGGATGCAATTCTCACTTGCATGGAACACA
rJMFF039F12-          TCGCCGGAGTCCGACGCCGACAGCAACTCCTGGATGCAATTCTCACTTGCATGGAACACA
                      ____________________________________________________________
consensus             TCGCCGGAGTCCGACGCCGACAGCAACTCCTGGATGCAATTCTCACTTGCATGGAACACA
 
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JMFF039F12+           TATCTCCTCAACGAATCCTCACTAATCGACCATGATCTAGTACAAGGTGCTGGACTTATT
rJMFF039F12-          TATCTCCTCAACGAATCCTCACTAATCGACCATGATCTAGTACAAGGTGCTGGACTTATT
                      ____________________________________________________________
consensus             TATCTCCTCAACGAATCCTCACTAATCGACCATGATCTAGTACAAGGTGCTGGACTTATT
 
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JMFF039F12+           GTACTACTCATCCTGGAGATTTCTTGGGAGAATTTGATTAATTGTTATCCTAAAACATAG
rJMFF039F12-          GTACTACTCATCCTGGAGATTTCTTGGGAGAATTTGATTAATTGTTATCCTAAAACATAG
                      ____________________________________________________________
consensus             GTACTACTCATCCTGGAGATTTCTTGGGAGAATTTGATTAATTGTTATCCTAAAACATAG
 
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JMFF039F12+           GAACAAAGAAAGGGAGAAGAATGAATATATAATGGGAAGTGAAAGT              
rJMFF039F12-          GAACAAAGAAAGGGAGAAGAATGAATATATAATGGGAAGTGAAAGTCGGTTCTCGACGAA
                      ____________________________________________________________
consensus             GAACAAAGAAAGGGAGAAGAATGAATATATAATGGGAAGTGAAAGTCGGTTCTCGACGAA