Contig 004074:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF023I15-                                           GTCGGTTTCCTATTTCTTTCTCTATCAG
                      ____________________________________________________________
consensus                                             GTCGGTTTCCTATTTCTTTCTCTATCAG
 
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JMSF023I15-           TTATTTCGCAATTTTCTTCACAAATGGGCGCGAAGAAGAATCAGAAGGCCGAGAGCGGCG
                      ____________________________________________________________
consensus             TTATTTCGCAATTTTCTTCACAAATGGGCGCGAAGAAGAATCAGAAGGCCGAGAGCGGCG
 
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JMFF035N03-                                                                    CCG
JMSF023I15-           AGCAGAAGAAGGCCGACGGCGGCAAGAAGGAAGGCGGCGGCGGCGGCGACAATGCTTCCG
                      ____________________________________________________________
consensus             AGCAGAAGAAGGCCGACGGCGGCAAGAAGGAAGGCGGCGGCGGCGGCGACAATGCTTCCG
 
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JMFF035N03-           TGGTTCTCAAGGCGGATTTGCATTGCGAGGGTTGTGTTTCCAAAATCGTCAAAACCATTC
JMSF023I15-           TGGTTCTCAAGGCGGATTTGCATTGCGAGGGTTGTGTTTCCAAAATCGTCAAAACCATTC
                      ____________________________________________________________
consensus             TGGTTCTCAAGGCGGATTTGCATTGCGAGGGTTGTGTTTCCAAAATCGTCAAAACCATTC
 
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JMFF035N03-           GAGGCTGTGATGGTGTGGAGGATGTAAAGGTGGAGCTCGGCGCTAACAAGGTGACAGTTA
JMSF023I15-           GAGGCTGTGATGGTGTGGAGGATGTAAAGGTGGAGCTCGGCGCTAACAAGGTGACAGTTA
                      ____________________________________________________________
consensus             GAGGCTGTGATGGTGTGGAGGATGTAAAGGTGGAGCTCGGCGCTAACAAGGTGACAGTTA
 
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JMFF035N03-           AGGGGAAGGTGGATCCGGCGGTGGTGAAGGAGAAAGTGGAGGCGAAGACGCACAAGCAAG
JMSF023I15-           AGGGGAAGGTGGATCCGGCGGTGGTGAAGGAGAAAGTGGAGGCGAAGACGCACAAGCAAG
rJMSF023I15+                       TCCGGCCGTGGTGAAGGAGAAAGTGGAGGCGAAGACGCACAAGCAAG
                      ____________________________________________________________
consensus             AGGGGAAGGTGGATCCGGCGGTGGTGAAGGAGAAAGTGGAGGCGAAGACGCACAAGCAAG
 
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JMFF035N03-           TGGTGGTGGTGTCGCCGCAGCCGGCCAACAAAGGCGGCGAGAAGGCGAAAGAAGGAGGAG
JMSF023I15-           TGGTGGTGGTGTCGCCGCAGCCGGCCAACAAAGGCGGCGAGAAGGCGAAAGAAGGAGGAG
rJMSF023I15+          TGGTGGTGGTGTCGCCGCAGCCGGCCAACAAAGGCGGCGAGAAGGCGAAAGAAGGAGGAG
rJMFF035N03+                                  CCAACAAAGGCGGCGAGAAGGCGAAAGAAGGAGGAG
                      ____________________________________________________________
consensus             TGGTGGTGGTGTCGCCGCAGCCGGCCAACAAAGGCGGCGAGAAGGCGAAAGAAGGAGGAG
 
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JMFF035N03-           GCGAAAAGCAGCAACAGAAGAAGAAGANAGAGGACAAGAAGGGTGGGGATTCAAAGGAGG
JMSF023I15-           GCGAAAAGCAGCAACAGAAGAAGAAGAAAGAGGACAAGAAGGGTGGGGATTCAAAGGAGG
rJMSF023I15+          GCGAAAAGCAGCAACAGAAGAAGAAGAAAGAGGACAAGAAGGGTGGGGATTCAAAGGAGG
rJMFF035N03+          GCGAAAAGCAGCANCAGAAGAAGAAGAAAGAGGACAAGAAGGGTGGGGATTCAAAGGAGG
                      ____________________________________________________________
consensus             GCGAAAAGCAGCAACAGAAGAAGAAGAAAGAGGACAAGAAGGGTGGGGATTCAAAGGAGG
 
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JMFF035N03-           AGGAGAGTAAGAAGGGAGAAGATGACAAG                               
JMSF023I15-           AGGAGAGTAAGAAGGGAGAAGATGACAAGAAGAAGGCCAAGGAGAAAGAGCCGGCGGTGA
rJMSF023I15+          AGGAGAGTAAGAAGGGAGAAGATGACAAGAAGAAGGCCAAGGAGAAAGAGCCGGCGGTGA
rJMSF033K20+                                                                    GA
rJMFF035N03+          AGGAGAGTAAGAAGGGAGAAGATGACAAGAAGAAGGCCAAGGAGAAAGAGCCGGCGGTGA
                      ____________________________________________________________
consensus             AGGAGAGTAAGAAGGGAGAAGATGACAAGAAGAAGGCCAAGGAGAAAGAGCCGGCGGTGA
 
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JMSF023I15-           CGACGGCGGTGTTCAAGATGAATCTCCACTGCGAAGGTTGTATCCAGAAGATTTACAAGA
rJMSF023I15+          CGACGGCGGTGTTCAAGATGAATCTCCACTGCGAAGGTTGTATCCAGAAGATTTACAAGA
rJMSF033K20+          CGACGNCGGTGTTCAAGATGNATCTCCACTGCGAAGGTTNTATCCANAAGATTTCCTAGA
rJMFF035N03+          CGACGGCGGTGTTCAAGATGAATCTCCACTGCGAAGGTTGTATCCAGAAGATTTACAAGA
                      ____________________________________________________________
consensus             CGACGGCGGTGTTCAAGATGAATCTCCACTGCGAAGGTTGTATCCAGAAGATTTACAAGA
 
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JMSF023I15-           TCGTCAGCAAAACCAAAGGATATCACGAAATGAAACTGGACAGGCAGAAGGAGGTGGTGA
rJMSF023I15+          TCGTCAGCAAAACCAAAGGATATCACGAAATGAAACTGGACAGGCAGAAGGAGGTGGTGA
rJMSF033K20+          TCGTCAGCAAAACCAAAGGATATCANGAAATGAAACTGGACAGGCAGAAGGAGGTGGTGA
rJMFF035N03+          TCGTCAGCAAAACCAAAGGATATCACGAAATGAAACTGGACAGGCAGAAGGAGGTGGTGA
                      ____________________________________________________________
consensus             TCGTCAGCAAAACCAAAGGATATCACGAAATGAAACTGGACAGGCAGAAGGAGGTGGTGA
 
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JMSF023I15-           CGGTAACGGGAGCAATGGACATGA                                    
rJMSF023I15+          CGGTAACGGGAGCAATGGACATGAAGGCGTTAGCGGAGAACCTGAAGAAGCACCTGAAAC
rJMSF033K20+          CGGTAACGNGANCAATGGACATGANGNCGTTAGNGGTGAACCTGNAGAAGCACCTGAANC
rJMFF035N03+          CGGTAACGGGAGCAATGGACATGAAGGCGTTAGCGGAGAACCTGAAGAAGCACCTGAAAC
                      ____________________________________________________________
consensus             CGGTAACGGGAGCAATGGACATGAAGGCGTTAGCGGAGAACCTGAAGAAGCACCTGAAAC
 
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rJMSF023I15+          GGGACGTGGAGATCGTGCCGCCGAAGAAGGAAGGCGGCGGCGAGAAGAAGGAGAAGGGCG
rJMSF033K20+          GNGACGTGGAGNTCNTGNCGCCNAAGAAGGNAGGCGGCGGCGNGAAGAAGGAGAAGGGCG
rJMFF035N03+          GGGACGTGGAGATCGTGCCGCCGAAGAAGGAAGGCGGCGGCGAGAAGAAGGAGAAGGGCG
                      ____________________________________________________________
consensus             GGGACGTGGAGATCGTGCCGCCGAAGAAGGAAGGCGGCGGCGAGAAGAAGGAGAAGGGCG
 
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rJMSF023I15+          GCGGGAATGAGAAGGGAAATGACAAGGGAAAGGGCGGCGGAAAGAAGGAAGCCGGTGGCG
rJMSF033K20+          GCGGGAATGAGAAGGGAAATGTCAAGNGAAAGGGCGGCGGAAAGAAGGAAGCCGGTGGCG
rJMFF035N03+          GCGGGAATGAGAAGGGAAATGACAAGGGAAAGGGCGGCGGAAAGAAGGAAGCCGGTGGCG
                      ____________________________________________________________
consensus             GCGGGAATGAGAAGGGAAATGACAAGGGAAAGGGCGGCGGAAAGAAGGAAGCCGGTGGCG
 
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rJMSF023I15+          GTGGTGGTGGTGACGGCGGGGAGAAGAATAAAGAAGAGGCAGCAAACAAANTGCAAGTGC
rJMSF033K20+          GTGGTGGTGGTGACGGCGGGGAGAAGAATAAAGANGNGGCANCAAACAAAATGCAAGTGC
rJMFF035N03+          GTGGTGGTGGTGACGGCGGGGAGAAGAATAAAGAAGAGGCAGCAAACAAAATGCAAGTGC
                      ____________________________________________________________
consensus             GTGGTGGTGGTGACGGCGGGGAGAAGAATAAAGAAGAGGCAGCAAACAAAATGCAAGTGC
 
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rJMSF023I15+          AAGTGGGGTACCCGTATCAGGGTCCGTACCCGTATATGTATGGGCCGGGTTATGTACAAG
rJMSF033K20+          AAGTGGGGTACCTGTATCAGGGTCCGTACCCGTATANGTATGGGCCGGGTTATGTACAAG
rJMFF035N03+          AAGTGGGGTACCCGTATCAGGGTCCGTACCCGTATATGTATGGGCCGGGTTATGTACAAG
                      ____________________________________________________________
consensus             AAGTGGGGTACCCGTATCAGGGTCCGTACCCGTATATGTATGGGCCGGGTTATGTACAAG
 
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rJMSF023I15+          ACCAGATGTACTACAATTACCCTCATGCCCCTCA-GATGTTCAGTGACGAGAACCCTAAT
rJMSF033K20+          ACCAGATGTACTACAATTACCCTCATGCCCCTCACGATGTTCAGTGACGAGAACCNTAAT
rJMFF035N03+          ACCAGATGTACTACAATTACCCTCATGCCCCTCA-GATGTTCAGTGACGAGAACCCTAAT
                      ____________________________________________________________
consensus             ACCAGATGTACTACAATTACCCTCATGCCCCTCA-GATGTTCAGTGACGAGAACCCTAAT
 
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rJMSF023I15+          GCTTGTAGCGTTATGTAATATGACA                                   
rJMSF033K20+          GCTTGTAGCGTTATNTAATATGACATCCACGNCATGTTCTAGAATGCGTTGTTAGCAGTT
rJMFF035N03+          GCTTGTAGCGTTATGTAATATGACA-CCACGGCATGTTCTAGAATGCGTTGTTA-CAGTT
                      ____________________________________________________________
consensus             GCTTGTAGCGTTATGTAATATGACATCCACGGCATGTTCTAGAATGCGTTGTTAGCAGTT
 
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rJMSF033K20+          GTAAATAAATTGCGTAGTAGCACACTTTTTGGTTTCTAAATTCTTAGT            
rJMFF035N03+          GTAAATAAATTGCGTAGTAGCACACTTTTTGGTTTCTAAATTCTTAGTTAGCNGAAAAAA
                      ____________________________________________________________
consensus             GTAAATAAATTGCGTAGTAGCACACTTTTTGGTTTCTAAATTCTTAGTTAGCNGAAAAAA