Contig 004069:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025C24Sequence504006386 (3)ref|XP_007039398.1|1e-18Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1 [Theobroma cacao] gb|777004069 (3)emb|CAN71141.1|4e-135hypothetical protein VITISV_025995 [Vitis vinifera]
JMFF034L13Sequence665004069 (3)emb|CAN71141.1|4e-109hypothetical protein VITISV_025995 [Vitis vinifera]
JMSF002G12Sequence259006386 (3)658004069 (3)emb|CAN71141.1|1e-108hypothetical protein VITISV_025995 [Vitis vinifera]

Alignment

This contig is upended


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rJMFF025C24+           CGTGCAGGACTTTTCATGCAGCTCGCCTAGTTTGCATCCTTGAAGCTTATGCTATGTAT
                      ____________________________________________________________
consensus              CGTGCAGGACTTTTCATGCAGCTCGCCTAGTTTGCATCCTTGAAGCTTATGCTATGTAT
 
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rJMSF002G12+                                                                TCAGTG
rJMFF025C24+          GATTCTGAGATTGGATACTGCCAGGGGATGAGTGATTTACTCTCTCCCATTATCTCAGTG
rJMFF034L13+                                                                TCAGTG
                      ____________________________________________________________
consensus             GATTCTGAGATTGGATACTGCCAGGGGATGAGTGATTTACTCTCTCCCATTATCTCAGTG
 
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rJMSF002G12+          ATTGAGGAGGATGATGTAGCCTTCTGGAGCTTCGTTGGTTTCATGCGGAAAGCAAGGCAT
rJMFF025C24+          ATTGAGGAGGATGATGTAGCCTTCTGGAGCTTCGTTGGTTTCATGCGGAAAGCACGGCAT
rJMFF034L13+          ATTGAGGAGGATGATGTAGCCTTCTGGAGCTTCGTTGGTTTCATGCGGAAAGCACGGCAT
                      ____________________________________________________________
consensus             ATTGAGGAGGATGATGTAGCCTTCTGGAGCTTCGTTGGTTTCATGCGGAAAGCACGGCAT
 
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rJMSF002G12+          AACTTCCGTCTTGATGAGGTAGGGATCCGGAGACAGCTAAGCATTGTGTCAAAGATCATA
rJMFF025C24+          AACTTCCGTCTTGATGAGGTAGGGATCCGGAGACAGCTAAGCATTGTGTCAAAGATCATA
rJMFF034L13+          AACTTCCGTCTTGATGAGGTAGGGATCCGGAGACAGCTAAGCATTGTGTCAAAGATCATA
                      ____________________________________________________________
consensus             AACTTCCGTCTTGATGAGGTAGGGATCCGGAGACAGCTAAGCATTGTGTCAAAGATCATA
 
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rJMSF002G12+          AAGTGCAAGGACTCTCATCTTTACAAACACTTGGAGCAGCTGGAAGCAGAGGATTGCTTT
rJMFF025C24+          AAGTGCAAGGACTNTCATCTTTACAAACACTTGGAGCAGCTGGAAGCAGAGGATTGCTTT
rJMFF034L13+          AAGTGCAAGGACTCTCATCTTTACAAACACTTGGAGCAGCTGGAAGCAGAGGATTGCTTT
                      ____________________________________________________________
consensus             AAGTGCAAGGACTCTCATCTTTACAAACACTTGGAGCAGCTGGAAGCAGAGGATTGCTTT
 
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rJMSF002G12+          TTTGTGTATAGAATGGTGGTAGTTCTTTTCAGGAGGGAGTTGAACTTTGAACAGACACTT
rJMFF025C24+          TTTGTGTATAGAATGGTGGTAGTTCTTTTCAGGAGGGAGTTGAACTTTGAACAGACACTT
rJMFF034L13+          TTTGTGTATAGAATGGTGGTAGTTCTTTTCAGGAGGGAGTTGAACTTTGAACAGACACTT
                      ____________________________________________________________
consensus             TTTGTGTATAGAATGGTGGTAGTTCTTTTCAGGAGGGAGTTGAACTTTGAACAGACACTT
 
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rJMSF002G12+          TGCCTGTGGGAGGTGATGTGGGCTGATCAGGCAGCCATTAGGGCCGGAATAGGGAAGTCA
rJMFF025C24+          TGCCTGTGGGAGGTGATGTGGGCTGATCAGGCAGCCATTAGGGCCGGAATAGGGAAGTCA
rJMFF034L13+          TGCCTGTGGGAGGTGATGTGGGCTGATCAGGCAGCCATTAGGGCCGGAATAGGGAAGTCA
                      ____________________________________________________________
consensus             TGCCTGTGGGAGGTGATGTGGGCTGATCAGGCAGCCATTAGGGCCGGAATAGGGAAGTCA
 
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rJMSF002G12+          AGCTGGGGGCGCATGAGGCTTAGGGCTCCTCCCACAGACGATCTTCTTCTATATGCAATA
rJMFF025C24+          AGCTGGGGGCGCATGAGGCTTAGGGCTCCTCCCACAGACGATCTTCTTCTATATGCAATA
rJMFF034L13+          AGCTGGGGGCGCATGAGGCTTAGGGCTCCTCCCACAGACGATCTTCTTCTATATGCAATA
                      ____________________________________________________________
consensus             AGCTGGGGGCGCATGAGGCTTAGGGCTCCTCCCACAGACGATCTTCTTCTATATGCAATA
 
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rJMSF002G12+          GCTGCTTCTGTGCTGCAAAGGAGGAAACTGATCATAGAGAAGTATAGCAGCATGGATGAA
rJMFF025C24+          GCTGCTTCTGTGCTGCAAAGGAGGAAACTGATCATAGAGAAGTATAGCAGCATGGATGAA
rJMFF034L13+          GCTGCTTCTGTGCTGCAAAGGAGGAAACTGATCATAGAGAAGTATAGCAGCATGGATGAA
                      ____________________________________________________________
consensus             GCTGCTTCTGTGCTGCAAAGGAGGAAACTGATCATAGAGAAGTATAGCAGCATGGATGAA
 
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rJMSF002G12+          ATTATGAGGGAATGCAATAGCATGACTGGGAAATTGGATGTTTGGAAGCTTTTTGATGAT
rJMFF025C24+          ATTATGAGGGAATGCAATAGCATGACTGGGAAATTGGATGTTTGGAAGCTTTTGGATGAT
rJMFF034L13+          ATTATGAGGGAATGCAATAGCATGACTGGGAAATTGGATGTTTGGAAGCTTTTGGATGAT
                      ____________________________________________________________
consensus             ATTATGAGGGAATGCAATAGCATGACTGGGAAATTGGATGTTTGGAAGCTTTTGGATGAT
 
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rJMSF002G12+          GCCCATGACTTAGTGGTCACCCTGCACGATAAGATTTAGCATTCCC-TTTGGTTAACTTG
rJMFF025C24+          GCCCATGACTTAGTGGTCACCCTGCACGATAAGATTTAGCATTCCC-TTTGGTTAACTTG
rJMFF034L13+          GCCCATGACTTAGTGGTCACCCTGCACGATAAGATTTAGCATTCCCTTTTGGTTAACTTG
                      ____________________________________________________________
consensus             GCCCATGACTTAGTGGTCACCCTGCACGATAAGATTTAGCATTCCC-TTTGGTTAACTTG
 
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rJMSF002G12+          TCTTCTTAATTTTACCTTACCTTACCTAGTTGAAGACTTTTATTTTTTTTTGTCTTCCAT
rJMFF025C24+          TCTTCTTAATTTTACCTTACCTTACCTAGTTGAAGACTTTTATTTTTTTTTGTCTTCCAT
rJMFF034L13+          TCTTCTTAATTTTACCTTACCTTACCTAGTTGAAGACTTTTATTTTTTTTTGTCTTCCAT
                      ____________________________________________________________
consensus             TCTTCTTAATTTTACCTTACCTTACCTAGTTGAAGACTTTTATTTTTTTTTGTCTTCCAT
 
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rJMSF002G12+          TCGGTATCCTCCTCCTCAGTGCTTGGAACCAAGTGTTTTATAGGTGTCCAT         
rJMFF025C24+          TCGGTATCCTCCTCCTCAGTGCTTGGAA-CAAGTGTTTTATAGGTGTCCATTCAGGACCA
rJMFF034L13+          TCGGTATCCTCCTCCTCAGTGCTTGGAA-CAAGTGTTTTATAGGTGTCCATTCAGGACCA
                      ____________________________________________________________
consensus             TCGGTATCCTCCTCCTCAGTGCTTGGAA-CAAGTGTTTTATAGGTGTCCATTCAGGACCA