Contig 004062:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033M06Sequence574000496 (3)ref|XP_007018494.1|4e-94Transducin/WD40 repeat-like superfamily protein isoform 3 [Theobroma cacao] gb|652004062 (2)ref|XP_006342666.1|8e-50PREDICTED: DNA excision repair protein ERCC-8-like [Solanum tuberosum]
JMSF009O12Sequence213000496 (3)381004062 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M06+                 TGATTCAAGGTTAAGGTTATGGGATATAGAGTNTGGTTGCAATACACTAGTGA
                      ____________________________________________________________
consensus                    TGATTCAAGGTTAAGGTTATGGGATATAGAGTNTGGTTGCAATACACTAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M06+          ACTTTGAAACTGGACGCCTTCAAACCNCCAAAGCACTACAAATGGCAATATCCGNGGATT
                      ____________________________________________________________
consensus             ACTTTGAAACTGGACGCCTTCAAACCNCCAAAGCACTACAAATGGCAATATCCGNGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M06+          CAACTGTTGTNTTTGTTCCATGCATGGCTACCACTAAAGCATTCAATTTATGGTNGGGCA
                      ____________________________________________________________
consensus             CAACTGTTGTNTTTGTTCCATGCATGGCTACCACTAAAGCATTCAATTTATGGTNGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M06+          AGGCAATGATGAATTTCCGTGGGCATTATGAAAATGTAAATTGTTGTTGGTACAATGCTC
                      ____________________________________________________________
consensus             AGGCAATGATGAATTTCCGTGGGCATTATGAAAATGTAAATTGTTGTTGGTACAATGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009O12+                            CTGGAAGTAATGNCNGGAAAATTCTCGNGNGGTCTCCCCCCA
rJMFF033M06+          AGGNCCAGGAACTATNCNCTGGAAGTAATGNCAGGAAAATTNTCGNGTGGTNTCCCCCCA
                      ____________________________________________________________
consensus             AGGNCCAGGAACTATNCNCTGGAAGTAATGNCAGGAAAATTCTCGNGTGGTCTCCCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009O12+          AAACNGTTNTTGAAGAATCNGNGGGAAAGATGAAACNGCAAAGTATGGTCGCTGATGAAG
rJMFF033M06+          AAACTGTTATTGAAGAATCAGAGGGAAAGATGAAACAGCAAAGTATGGTCGCTGATGAAG
                      ____________________________________________________________
consensus             AAACTGTTATTGAAGAATCAGAGGGAAAGATGAAACAGCAAAGTATGGTCGCTGATGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009O12+          ATTGTTGGNGNGACTGNGGNCTNTTGACCNTCAATTTACNGGTTTTGCAAGTTTGNGGAA
rJMFF033M06+          ATTGTTGGAGTGACTGAGGACTATTGACCATCAATTTACAGGTTTNGCAAGTTTGTGGAA
                      ____________________________________________________________
consensus             ATTGTTGGAGTGACTGAGGACTATTGACCATCAATTTACAGGTTTTGCAAGTTTGTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009O12+          GAACNTGTTTTTTTTTTTTTAAATATCTTAGCTTGCTTGAAGAATGAAGAGAACTTTGTG
rJMFF033M06+          GAACATG-TTTTTTTTTTTTAAATATCTTAGCTTGCTTGAAGAATGAAGAGAACTTTGTG
                      ____________________________________________________________
consensus             GAACATGTTTTTTTTTTTTTAAATATCTTAGCTTGCTTGAAGAATGAAGAGAACTTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009O12+          AACAATTGGAAGCTTTTGTTTCTACTATGTTGGTGAGGTTAAGATTTTGGACTGCATCTT
rJMFF033M06+          AACAATTGGAAGCTTTTGTTTCTACTATGTTGGTGAGGTTAAGATTTTGGACTGCATCTT
                      ____________________________________________________________
consensus             AACAATTGGAAGCTTTTGTTTCTACTATGTTGGTGAGGTTAAGATTTTGGACTGCATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009O12+          GAAATCATGAACAAAACATGGCCCTTCAGATCTATATTCTCTGTAGCCTTTTTAAGTTTA
rJMFF033M06+          GAAATCATGAACAAAACATGGCCCTTCAGATCTATATTCTCTGTAGCCTTTTTAAGTTTA
                      ____________________________________________________________
consensus             GAAATCATGAACAAAACATGGCCCTTCAGATCTATATTCTCTGTAGCCTTTTTAAGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009O12+          GGGGTTATCTATAATTACCCCTCCCCTTTCTGAGCCTAT                     
rJMFF033M06+          GGGGTTATCTATAATTACCCCTCCCCTTTCTGAGCCTATNGTTCTTGTCTCCAGTACATA
                      ____________________________________________________________
consensus             GGGGTTATCTATAATTACCCCTCCCCTTTCTGAGCCTATNGTTCTTGTCTCCAGTACATA