| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033H16 | Sequence | 383 | 000847 (5) | ref|XP_011081221.1| | 1e-45 | PREDICTED: lys-63-specific deubiquitinase BRCC36 [Sesamum indicum] | 770 | 004060 (3) | ref|XP_006356198.1| | 2e-82 | PREDICTED: uncharacterized protein LOC102592487 isoform X1 [Solanum tuberosum] |
| JMSF030E20 | Sequence | 561 | 000847 (5) | ref|XP_009797316.1| | 280 | PREDICTED: uncharacterized protein LOC104243764 [Nicotiana sylvestris] | 754 | 004060 (3) | ref|XP_006356198.1| | 1e-76 | PREDICTED: uncharacterized protein LOC102592487 isoform X1 [Solanum tuberosum] |
| JMSF033O24 | Sequence | 684 | 000847 (5) | ref|XP_009797316.1| | 330 | PREDICTED: uncharacterized protein LOC104243764 [Nicotiana sylvestris] | 711 | 004060 (3) | ref|XP_006356198.1| | 5e-83 | PREDICTED: uncharacterized protein LOC102592487 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF033O24+ CTGTCAGTAATGCAGCTATTGAGATAGATCACATGGA
rJMFF033H16+ TTGCATACCANCACTGTCAGTAATGCAGCTATTGAGATAGATCACATGGA
____________________________________________________________
consensus TTGCATACCANCACTGTCAGTAATGCAGCTATTGAGATAGATCACATGGA
. : . : . : . : . : . :
rJMSF033O24+ TATGTCGGAAAGTATGCAAGAAGCAATGCACCTGTCAAATATGGAGATGAGTGGTGCAGA
rJMFF033H16+ TATGTCGGAAAGTATGCAAGAAGCAATGCACCTGTCAAATATGGAGATGAGTGGTGCAGA
____________________________________________________________
consensus TATGTCGGAAAGTATGCAAGAAGCAATGCACCTGTCAAATATGGAGATGAGTGGTGCAGA
. : . : . : . : . : . :
rJMSF033O24+ GTATGTCAGGAAGGAAATCCCTCTTCTTGTTATGCCATCGTCATCACTTCTTAATCTCGA
rJMFF033H16+ GTATGTCAGGAAGGAAATCCCTCTTCTTGTTATGCCATCGTCATCACTTCTTAATCTCGA
____________________________________________________________
consensus GTATGTCAGGAAGGAAATCCCTCTTCTTGTTATGCCATCGTCATCACTTCTTAATCTCGA
. : . : . : . : . : . :
rJMSF033O24+ TACACCTTTGAATTCATTTACTGATCTGCAACGCGTACTATATGAAGAGGAGCGGACTGC
rJMFF033H16+ TACACCTTTGAATTCATTTACTGATCTGCAACGCGTACTATATGAAGAGGAGCGGACTGC
____________________________________________________________
consensus TACACCTTTGAATTCATTTACTGATCTGCAACGCGTACTATATGAAGAGGAGCGGACTGC
. : . : . : . : . : . :
rJMSF033O24+ ATTTAATCAAGCAGTTACACAAAACATGAGGGATGGGAAAGTGCACCCTCTAACTTTTAT
rJMSF030E20+ AGGGATGGGAAAGTGCACCCTCTAACTTTTAT
rJMFF033H16+ ATTTAATCAAGCAGTTACACAAAACATGAGGGATGGGAAAGTGCACCCTCTAACTTTTAT
____________________________________________________________
consensus ATTTAATCAAGCAGTTACACAAAACATGAGGGATGGGAAAGTGCACCCTCTAACTTTTAT
. : . : . : . : . : . :
rJMSF033O24+ CCATCACACATCCACATATCAGGCTTCCATGTGCAAACTGATGGAATATTGCTTGAGCCC
rJMSF030E20+ CCATCACACATCCACATATCAGGCTTCCATGTGCAAACTGATGGAATATTGCTTGAGCCC
rJMFF033H16+ CCATCACACATCCACATATCAGGCTTCCATGTGCAAACTGATGGAATATTGCTTGAGCCC
____________________________________________________________
consensus CCATCACACATCCACATATCAGGCTTCCATGTGCAAACTGATGGAATATTGCTTGAGCCC
. : . : . : . : . : . :
rJMSF033O24+ TGCCATTATTGCTCTCCAGGACCGCTTGCGAGAAAATGAAATTCAGCTAAAGATGCTAGC
rJMSF030E20+ TGCCATTATTGCTCTCCAGGACCGCTTGCGAGAAAATGAAATTC------AGATGCTAGC
rJMFF033H16+ TGCCATTATTGCTCTCCAGGACCGCTTGCGAGAAAATGAAATTCAGCTAAAGATGCTAGC
____________________________________________________________
consensus TGCCATTATTGCTCTCCAGGACCGCTTGCGAGAAAATGAAATTCAGCTAAAGATGCTAGC
. : . : . : . : . : . :
rJMSF033O24+ TGATGAAGCAAAGGTTTTGGAATCGGAGACTAAACGAGCAGAGACAACTTCTACAGTTTC
rJMSF030E20+ TGATGAAGCAAAGGTTTTGGAATCGGAGACTAAACGAGCAGAGACAACTTCTACAGTTTC
rJMFF033H16+ TGATGAAGCAAAGGTTTTGGAATCGGAGACTAAACGAGCAGAGACAACTTCTACAGTTTC
____________________________________________________________
consensus TGATGAAGCAAAGGTTTTGGAATCGGAGACTAAACGAGCAGAGACAACTTCTACAGTTTC
. : . : . : . : . : . :
rJMSF033O24+ TCCTCGTAGAGGTAGCCCTTCCAATTCACCAGGCCACAAAGACTTGTATCCTCCTGGTGA
rJMSF030E20+ TCCTCGTAGAGGTAGCCCTTCCAATTCACCAGGCCACAAAGACTTGTATCCTCCTGGTGA
rJMFF033H16+ TCCTCGTAGAGGTAGCCCTTCCAATTCACCAGGCCACAAAGACTTGTATCCTCCTGGTGA
____________________________________________________________
consensus TCCTCGTAGAGGTAGCCCTTCCAATTCACCAGGCCACAAAGACTTGTATCCTCCTGGTGA
. : . : . : . : . : . :
rJMSF033O24+ ATTAAGCAACACAAGAACTTTTGGTAGTTCTGGTAGCCGGAGCAGAAAAGGATCCTAAAC
rJMSF030E20+ ATTAAGCAACACAAGAACTTTTGGTAGTTCTGGTAGCCGGAGCAGAAAAGGATCCTAAAC
rJMFF033H16+ ATTAAGCAACACAAGAACTTTTGGTAGTTCTGGTAGCCGGAGCAGAAAAGGATCCTAAAC
____________________________________________________________
consensus ATTAAGCAACACAAGAACTTTTGGTAGTTCTGGTAGCCGGAGCAGAAAAGGATCCTAAAC
. : . : . : . : . : . :
rJMSF033O24+ CCTAATATAAAGATACTAGGATCCTTACTCTAAGCAAGTGTATTATATGTAGTAGTTGGG
rJMSF030E20+ CCTAATATAAAGATACTAGGATCCTTACTCTAAGCAAGTGTATTATATGTAGTAGTTGGG
rJMFF033H16+ CCTAATATAAAGATACTAGGATCCTTACTCTAAGCAAGTGTATTATATGTAGTAGTTGGG
____________________________________________________________
consensus CCTAATATAAAGATACTAGGATCCTTACTCTAAGCAAGTGTATTATATGTAGTAGTTGGG
. : . : . : . : . : . :
rJMSF033O24+ GGTATTTCTCCCTCTTTTTTGTGCTTCCTTTGAACTGTAATTTTTGGATATGT
rJMSF030E20+ GGTATTTCTCCCTCTTTTTTGTGCTTCCTTTGAACTGTAATTTTTGGATATGTTGAGAAA
rJMFF033H16+ GGTATTTCTCCCTCTTTTTTGTGCTTCCTTTGAACTGTAATTTTTGGATATGTTGAGAAA
____________________________________________________________
consensus GGTATTTCTCCCTCTTTTTTGTGCTTCCTTTGAACTGTAATTTTTGGATATGTTGAGAAA
. : . : . : . : . : . :
rJMSF030E20+ GTTCATTTTGTTAATACCTATAATTCAACTGCTCTTTCTCTCAGCTGAATGG
rJMFF033H16+ GTTCATTTTGTTAATACCTATAATTCAACTGCTCTTTCTCTCAGCTGAATGGTAATGAAA
____________________________________________________________
consensus GTTCATTTTGTTAATACCTATAATTCAACTGCTCTTTCTCTCAGCTGAATGGTAATGAAA