Contig 004059:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032M09Sequence621022748ref|XP_003544571.1|6e-63PREDICTED: probable protein phosphatase 2C 59 isoform X1 [Glycine max] ref|XP_0667004059 (2)ref|XP_010648785.1|6e-82PREDICTED: probable protein phosphatase 2C 59 [Vitis vinifera] ref|XP_010648786.
JMFF034L15Sequence553015277ref|XP_004291987.1|5e-79PREDICTED: probable protein phosphatase 2C 59 [Fragaria vesca subsp. vesca] ref401004059 (2)ref|XP_010648785.1|2e-26PREDICTED: probable protein phosphatase 2C 59 [Vitis vinifera] ref|XP_010648786.

Alignment

This contig is upended


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rJMFF032M09+                                                              TGGGACTG
                      ____________________________________________________________
consensus                                                                 TGGGACTG
 
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rJMFF032M09+          CTATTGCTGTTTCTCGGGATCACAAGCCAGACCAGAAGGATGAGCGACAACGTATTGAAG
                      ____________________________________________________________
consensus             CTATTGCTGTTTCTCGGGATCACAAGCCAGACCAGAAGGATGAGCGACAACGTATTGAAG
 
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rJMFF032M09+          ATGCTGGAGGTTTTGTCATGTGGGCAGGTACCTGGAGAGTTGGAGGTGTGCTTGCTGTTT
                      ____________________________________________________________
consensus             ATGCTGGAGGTTTTGTCATGTGGGCAGGTACCTGGAGAGTTGGAGGTGTGCTTGCTGTTT
 
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rJMFF032M09+          CCCGAGCATTTGGTGATAGGCTTTTGAAGCAGTATGTTGTCGCAGATCCAGAAATCAAGG
                      ____________________________________________________________
consensus             CCCGAGCATTTGGTGATAGGCTTTTGAAGCAGTATGTTGTCGCAGATCCAGAAATCAAGG
 
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rJMFF034L15+                                 GAGTTCCTTATCCTTGCAAGTGACGGGCTGTGGGATG
rJMFF032M09+          AGGAAAAGGTTGACAGTTCACTTGAGTTCCTTATCCTTGCAAGTGACGGGCTGTGGGATG
                      ____________________________________________________________
consensus             AGGAAAAGGTTGACAGTTCACTTGAGTTCCTTATCCTTGCAAGTGACGGGCTGTGGGATG
 
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rJMFF034L15+          TAGTGACAAATGAGGAAGCTGTGTCGATGGTCAAGCCCATCCCGGAACCTGAGGAAGCAG
rJMFF032M09+          TAGTGACAAATGAGGAAGCTGTGTCGATGGTCAAGCCCATCCCGGAACCTGAGGAAGCAG
                      ____________________________________________________________
consensus             TAGTGACAAATGAGGAAGCTGTGTCGATGGTCAAGCCCATCCCGGAACCTGAGGAAGCAG
 
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rJMFF034L15+          CAAAGAGACTAATGCAAGAAGCTTATCAAAGAGGCAGNGCAGACAACATCNCCATTATCA
rJMFF032M09+          CAAAGAGACTAATGCAAGAAGCTTATCAAAGAGGCAGCGCAGACAACATCACCATTATCA
                      ____________________________________________________________
consensus             CAAAGAGACTAATGCAAGAAGCTTATCAAAGAGGCAGCGCAGACAACATCACCATTATCA
 
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rJMFF034L15+          TAGNGCGTTTTTTGGCTTACGAAGGGGATGCCTNTCACAGNGGCTNTGGTTGAGGAGTGC
rJMFF032M09+          TAGTGCGTTTTCTGGCTAACGAAGGGGATGCCTCTCACAGTGGCTCTGGTTGAGGAGTGC
                      ____________________________________________________________
consensus             TAGTGCGTTTTTTGGCTTACGAAGGGGATGCCTCTCACAGTGGCTCTGGTTGAGGAGTGC
 
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rJMFF034L15+          TATNTTTCCGCAAGGACTAATTGCCGATAATATGAATAGGATTGTAAGTAAATATAGAAG
rJMFF032M09+          TATCTTTCCGCAAGGACTAATTGCCGATAATATGAATAGGATTGTAAGTAAATATAGAAG
                      ____________________________________________________________
consensus             TATCTTTCCGCAAGGACTAATTGCCGATAATATGAATAGGATTGTAAGTAAATATAGAAG
 
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rJMFF034L15+          AAGTAAAAAAAAAACAGACTTCTGGGTGTTATTTAATAGAGAGACGACCTTAGACAGGGA
rJMFF032M09+          AAGT-AAAAAAAAACAGACTTCTGGGTGTTATTTAATAGAGAGACGACCTTAGACAGGGA
                      ____________________________________________________________
consensus             AAGTAAAAAAAAAACAGACTTCTGGGTGTTATTTAATAGAGAGACGACCTTAGACAGGGA
 
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rJMFF034L15+          ACATGTCTGACTTGCAGCCAGCTTATCAAGAAGTTAAACGAGTGAGTGAACCTACCTATA
rJMFF032M09+          ACATGTCTGACTTGCAGCCAGCTTATCAAGAAGTTAAACGAGTGAGTGAACCTACCTATA
                      ____________________________________________________________
consensus             ACATGTCTGACTTGCAGCCAGCTTATCAAGAAGTTAAACGAGTGAGTGAACCTACCTATA
 
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rJMFF034L15+          TATA                                                        
rJMFF032M09+          TATATATATGAGTAGCGTCCGTGATTTATTATTTGTTCTAAATTTAACTGTCATTTCATT
                      ____________________________________________________________
consensus             TATATATATGAGTAGCGTCCGTGATTTATTATTTGTTCTAAATTTAACTGTCATTTCATT