Contig 004058:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D20Sequence580000921 (5)ref|XP_008373693.1|3e-102PREDICTED: AP-2 complex subunit mu-like [Malus domestica]702004058 (4)dbj|BAH20421.1|7e-72AT5G46630 [Arabidopsis thaliana]
JMFF032H06Sequence576000921 (5)ref|XP_008373693.1|3e-101PREDICTED: AP-2 complex subunit mu-like [Malus domestica]799004058 (4)ref|XP_011070241.1|2e-88PREDICTED: AP-2 complex subunit mu-like [Sesamum indicum]
JMSF042F12Sequence781000921 (5)gb|KDO51121.1|7e-158hypothetical protein CISIN_1g013671mg [Citrus sinensis]700004058 (4)dbj|BAH20421.1|1e-76AT5G46630 [Arabidopsis thaliana]
JMSF043P18Sequence686000921 (5)gb|KDO51121.1|1e-120hypothetical protein CISIN_1g013671mg [Citrus sinensis]560004058 (4)ref|XP_009377081.1|4e-42PREDICTED: LOW QUALITY PROTEIN: AP-2 complex subunit mu [Pyrus x bretschneideri

Alignment

This contig is upended


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rJMFF032H06+                                                   GTGTTTTGCCAACTATAAA
                      ____________________________________________________________
consensus                                                      GTGTTTTGCCAACTATAAA
 
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rJMFF032H06+          GGAAATTAGGTCGGACACGCATGGAAGTGAATGTAAAGGTTAAGAGTGTCTTCGGTGCTA
                      ____________________________________________________________
consensus             GGAAATTAGGTCGGACACGCATGGAAGTGAATGTAAAGGTTAAGAGTGTCTTCGGTGCTA
 
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rJMFF001D20+                                 ATTAAAATTCCAGTACCAAAGCAAACGGCAAAAACAA
rJMSF042F12+            ATGTTCGCACTCGGTGTAGTGATTAAAATTCCAGTACCAAAGCAAACGGCAAAAACAA
rJMFF032H06+          AAATGTTCGCACTCGGTGTAGTGATTAAAATTCCAGTACCAAAGCAAACGGCAAAAACAA
                      ____________________________________________________________
consensus             AAATGTTCGCACTCGGTGTAGTGATTAAAATTCCAGTACCAAAGCAAACGGCAAAAACAA
 
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rJMFF001D20+          ATTTTCAGGTGACATCAGGAAAAGCAAAGTATAATCCTTCTATTGACTGTTTGGTCTGGA
rJMSF042F12+          ATTTTCAGGTGACATCAGGAAAAGCAAAGTATAATCCTTCTATTGACTGTTTGGTCTGGA
rJMFF032H06+          ATTTTCAGGTGACATCAGGAAAAGCAAAGTATAATCCTTCTATTGACTGTTTGGTCTGGA
                      ____________________________________________________________
consensus             ATTTTCAGGTGACATCAGGAAAAGCAAAGTATAATCCTTCTATTGACTGTTTGGTCTGGA
 
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rJMSF043P18+                         CTGGACAAACTGAGCCAACATTGAGTGCTGAAGTAGAGTTGATTT
rJMFF001D20+          AGATTCGAAAATTTCCTGGACAAACTGAGCCAACATTGAGTGCTGAAGTAGAGTTGATTT
rJMSF042F12+          AGATTCGAAAATTTCCTGGACAAACTGAGCCAACATTGAGTGCTGAAGTAGAGTTGATTT
rJMFF032H06+          AGATTCGAAAATTTCCTGGACAAACTGAGCCAACATTGAGTGCTGAAGTAGAGTTGATTT
                      ____________________________________________________________
consensus             AGATTCGAAAATTTCCTGGACAAACTGAGCCAACATTGAGTGCTGAAGTAGAGTTGATTT
 
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rJMSF043P18+          CAACAATGACAGAGAAGAAATCATGGACTCGGCCACCGATTCAAATGGAATTTCAGGTTC
rJMFF001D20+          CAACAATGACAGAGAAGAAATCATGGACTCGGCCACCGATTCAAATGGAATTTCAGGTTC
rJMSF042F12+          CAACAATGACAGAGAAGAAATCATGGACTCGGCCACCGATTCAAATGGAATTTCAGGTTC
rJMFF032H06+          CAACAATGACAGAGAAGAAATCATGGACTCGGCCACCGATTCAAATGGAATTTCAGGTTC
                      ____________________________________________________________
consensus             CAACAATGACAGAGAAGAAATCATGGACTCGGCCACCGATTCAAATGGAATTTCAGGTTC
 
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rJMSF043P18+          CCATGTTTACAGCATCTGGATTACGTGTTCGTTTTCTCAAGGTGTGGGAGAAGAGTGGCT
rJMFF001D20+          CCATGTTTACAGCATCTGGATTACGTGTTCGTTTTCTCAAGGTGTGGGAGAAGAGTGGCT
rJMSF042F12+          CCATGTTTACAGCATCTGGATTACGTGTTCGTTTTCTCAAGGTGTGGGAGAAGAGTGGCT
rJMFF032H06+          CCATGTTTACAGCATCTGGATTACGTGTTCGTTTTCTCAAGGTGTGGGAGAAGAGTGGCT
                      ____________________________________________________________
consensus             CCATGTTTACAGCATCTGGATTACGTGTTCGTTTTCTCAAGGTGTGGGAGAAGAGTGGCT
 
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rJMSF043P18+          ATAACACAGTTGAATGGGTTCGTTACATTACCAAAGCTGGTTCCTATGAGATTAGGTGTT
rJMFF001D20+          ATAACACAGTTGAATGGGTTCGTTACATTACCAAAGCTGGTTCCTATGAGATTAGGTGTT
rJMSF042F12+          ATAACACAGTTGAATGGGTTCGTTACATTACCAAAGCTGGTTCCTATGAGATTAGGTGTT
rJMFF032H06+          ATAACACAGTTGAATGGGTTCGTTACATTACCAAAGCTGGTTCCTATGAGATTAGGTGTT
                      ____________________________________________________________
consensus             ATAACACAGTTGAATGGGTTCGTTACATTACCAAAGCTGGTTCCTATGAGATTAGGTGTT
 
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rJMSF043P18+          AGGAGAGAGTACTGTAAAATTCTTTGTTGCACAAATAATTGAAATTTGTTGAAGCCTCTA
rJMFF001D20+          AGGAGAGAGTACTGTAAAATTCTTTGTTGCACAAATAATTGAAATTTGTTGAAGCCTCTA
rJMSF042F12+          AGGAGAGAGTACTGTAAAATTCTTTGTTGCACAAATAATTGAAATTTGTTGAAGCCTCTA
rJMFF032H06+          AGGAGAGAGTACTGTAAAATTCTTTGTTGCACAAATAATTGAAATTTGTTGAAGCCTCTA
                      ____________________________________________________________
consensus             AGGAGAGAGTACTGTAAAATTCTTTGTTGCACAAATAATTGAAATTTGTTGAAGCCTCTA
 
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rJMSF043P18+          TGGTCTTGAAGTTAAACCGTCAAAACTATACAATGGGACGAGGATATAATTCCGTCATTC
rJMFF001D20+          TGGTCTTGAAGTTAAACCGTCAAAACTATACAATGGGACGAGGATATAATTCCGTCATTC
rJMSF042F12+          TGGTCTTGAAGTTAAACCGTCAAAACTATACAATGGGACGAGGATATAATTCCGTCATTC
rJMFF032H06+          TGGTCTTGAAGTTAAACCGTCAAAACTATACAATGGGACGAGGATATAATTCCGTCATTC
                      ____________________________________________________________
consensus             TGGTCTTGAAGTTAAACCGTCAAAACTATACAATGGGACGAGGATATAATTCCGTCATTC
 
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rJMSF043P18+          CACTACGTCTTCCCTTCAGCTCTTTGGTATGGCATGTCAATACTTGTATTTGGTATTGTG
rJMFF001D20+          CACTACGTCTTCCCTTCAGCTCTTTGGTATGGCATGTCAATACTTGTATTTGGTATTGTG
rJMSF042F12+          CACTACGTCTTCCCTTCAGCTCTTTGGTATGGCATGTCAATACTTGTATTTGGTATTGTG
rJMFF032H06+          CACTACGTCTTCCCTTCAGCTCTTTGGTATGGCATGTCAATACTTGTATTTGGTATTGTG
                      ____________________________________________________________
consensus             CACTACGTCTTCCCTTCAGCTCTTTGGTATGGCATGTCAATACTTGTATTTGGTATTGTG
 
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rJMSF043P18+          AAATTTGAGTTGATCTTGGTGTTACAGAGGCTATTGGAGACATGAGATGGTGTGAATTGC
rJMFF001D20+          AAATTTGAGTTGATCTTGGTGTTACAGAGGCTATTGGAGACATGAGATGGTGTGAATTGC
rJMSF042F12+          AAATTTGAGTTGATCTTGGTGTTACAGAGGCTATTGGAGACATGAGATGGTGTGAATTGC
rJMFF032H06+          AAATTTGAGTTGATCTTGGTGTTACAGAGGCTATTGGAGACATGAGATGGTGTGAATTGC
                      ____________________________________________________________
consensus             AAATTTGAGTTGATCTTGGTGTTACAGAGGCTATTGGAGACATGAGATGGTGTGAATTGC
 
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rJMSF043P18+          AATTTTCCTGATTTTTTTTTCCCTATACTATACTTTTTTGTAATTACTTCATGGTTTGTT
rJMFF001D20+          AATTTTCCTGATTTTTTTTTCCCTATACTATACTTTTTTGTAATTACTTCATGGTTTGTT
rJMSF042F12+          AATTTTCCTGATTTTTTTTTCCCTATACTATACTTTTTTGTAATTACTTCATGGTTTGTT
rJMFF032H06+          AATTTTCCTGATTTTTTTTTCCCTATACTATACTTTTTTGTAATTACTTCATGGTTTGTT
                      ____________________________________________________________
consensus             AATTTTCCTGATTTTTTTTTCCCTATACTATACTTTTTTGTAATTACTTCATGGTTTGTT
 
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rJMSF043P18+          CAAACATACTTGTAGGTGAAATTTATTGTAATTCT                         
rJMFF001D20+          CAAACATACTTGTAGGTGAAATTTATTGTAATTCTTTTACATCTTGCAGAGAAACAATA 
rJMSF042F12+          CAAACATACTTGTAGGTGAAATTTATTGTAATTCT                         
rJMFF032H06+          CAAACATACTTGTAGGTGAAATTTATTGTAATTCTTTTACATCTTGCAGAGAAACAATAT
                      ____________________________________________________________
consensus             CAAACATACTTGTAGGTGAAATTTATTGTAATTCTTTTACATCTTGCAGAGAAACAATAT