Contig 004043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027H03Sequence622003187 (3)ref|XP_009788156.1|2e-06PREDICTED: putative UPF0481 protein At3g02645 isoform X2 [Nicotiana sylvestris]754004043 (2)ref|XP_009777972.1|7e-36PREDICTED: UPF0481 protein At3g47200-like, partial [Nicotiana sylvestris]
JMFF050O01Sequence648003297 (4)ref|XP_009778673.1|146PREDICTED: uncharacterized protein LOC104227990 [Nicotiana sylvestris]581004043 (2)ref|XP_004236861.1|8e-31PREDICTED: putative UPF0481 protein At3g02645 isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF027H03+                                    ACAATATGTGGCTAAGATTAAACCATATGAACAG
                      ____________________________________________________________
consensus                                       ACAATATGTGGCTAAGATTAAACCATATGAACAG
 
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rJMFF027H03+          TGCGACAGAGCTTAAAGGGGTTGGAGTTAGGTTTGACAAGATTGGCCAAGTCTTCAATAT
                      ____________________________________________________________
consensus             TGCGACAGAGCTTAAAGGGGTTGGAGTTAGGTTTGACAAGATTGGCCAAGTCTTCAATAT
 
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rJMFF050O01+                                                                    GA
rJMFF027H03+          GCCAAAGAAATATGAAAACATTCCACCACCAAAGTATCGCGGTGGCAGTAGCTTGTTCGA
                      ____________________________________________________________
consensus             GCCAAAGAAATATGAAAACATTCCACCACCAAAGTATCGCGGTGGCAGTAGCTTGTTCGA
 
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rJMFF050O01+          TATAACCTTTCATAATGGGATAATGACCATACCATGCTTTAAAGTCGACAACTACACTGA
rJMFF027H03+          TATAACCTTTCATAATGGGATAATGACCATACCATGCTTTAAAGTCGACAACTACACTGA
                      ____________________________________________________________
consensus             TATAACCTTTCATAATGGGATAATGACCATACCATGCTTTAAAGTCGACAACTACACTGA
 
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rJMFF050O01+          ACTATTCTTCCGAAGCATGATTGCCATGGAGCAGCGGTGCAGCGAGAGACTAAACCCCAA
rJMFF027H03+          ACTATTCTTCCGAAACATGATTGCCATGGAGCAGCGGTGCAGCGAGAGACTAAACCCCAA
                      ____________________________________________________________
consensus             ACTATTCTTCCGAAGCATGATTGCCATGGAGCAGCGGTGCAGCGAGAGACTAAACCCCAA
 
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rJMFF050O01+          ATACTTCACAGATTATGCGAGGTTGATGGACCACTTGGTGGACACCAATAGAGACGTTAG
rJMFF027H03+          ATACTTCACAGATTATGCGAGGTTGATGGACCACTTGGTGGACACCAATAGAGACGTTAG
                      ____________________________________________________________
consensus             ATACTTCACAGATTATGCGAGGTTGATGGACCACTTGGTGGACACCAATAGAGACGTTAG
 
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rJMFF050O01+          TTTGCTCCGCAAGAATGGGATCATTCAAAACCTCTTAGGTGAAGATAGGAAGGTGGCCTA
rJMFF027H03+          TTTGCTCCGCAAGAATGGGATCATTCAAAACCTCTTAGGTGAAGATAGGAAGGTGGCCTA
                      ____________________________________________________________
consensus             TTTGCTCCGCAAGAATGGGATCATTCAAAACCTCTTAGGTGAAGATAGGAAGGTGGCCTA
 
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rJMFF050O01+          TATTTTCAACAACCTCAGTGCCGAGGTAGATACTTCCACCAACTTCTATTTTGCATCGGT
rJMFF027H03+          TATTTTCAACAACCTCAGTGCCGAGGTAGATACTTCCACCAACTTCTATTTTGCATCGGT
                      ____________________________________________________________
consensus             TATTTTCAACAACCTCAGTGCCGAGGTAGATACTTCCACCAACTTCTATTTTGCATCGGT
 
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rJMFF050O01+          GTACAAGGATGTGGATCAGCACTCTCCTGATGACTGTTGTAATTTCAGCAAACCCAAAAC
rJMFF027H03+          GTACAAGGATGTGGATCAGCACTCTCCTGATGACTGTTGTAATTTCAGCAAACCCAAAAC
                      ____________________________________________________________
consensus             GTACAAGGATGTGGATCAGCACTCTCCTGATGACTGTTGTAATTTCAGCAAACCCAAAAC
 
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rJMFF050O01+          TTACTGCCTATGGAAAGTGATTACTACTCTCTTGATCGCTATCCCGTTGTTGATTTTGGC
rJMFF027H03+          TTACTGCCTATGGAAAGTGATTACTACTCTCTTGATCGCTATCCCGTTGTTGATTTTGGC
                      ____________________________________________________________
consensus             TTACTGCCTATGGAAAGTGATTACTACTCTCTTGATCGCTATCCCGTTGTTGATTTTGGC
 
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rJMFF050O01+          AGTTCGTCCAAGTAAAGTTCAGATCAAGATTAGTCACTAAAATAATATGTACGTACTTGT
rJMFF027H03+          AGTTCGTCCAAGTAAAGTTCAGATCAAGATTAGTCACTAAAATAATATGTACGTACTTGT
                      ____________________________________________________________
consensus             AGTTCGTCCAAGTAAAGTTCAGATCAAGATTAGTCACTAAAATAATATGTACGTACTTGT
 
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rJMFF050O01+          GTAGTTTCATCAATGTGTACTTCATACTACTTTGTAAAACAAAACTTGAATCCATCTGGG
rJMFF027H03+          GTAGTTTCATCAATGTGTACTTCATACTACTTTGTAAAACAAAACTTGAATCCATCTGGG
                      ____________________________________________________________
consensus             GTAGTTTCATCAATGTGTACTTCATACTACTTTGTAAAACAAAACTTGAATCCATCTGGG
 
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rJMFF050O01+          GTCTTAATTAGAATTGAATAATCCCACTTGGGAACCTGT                     
rJMFF027H03+          GTCTTAATTAGAATTGAATAATCCCACTTGGGAACCTGTAAAAGTAAGTATAAAATCAGA
                      ____________________________________________________________
consensus             GTCTTAATTAGAATTGAATAATCCCACTTGGGAACCTGTAAAAGTAAGTATAAAATCAGA