Contig 004040:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF006A16-                 AATCACCACCAGATACAAAGTTTGAGAGGAGAGAGAGAGAAGCTAAAAGAGTTT
                      ____________________________________________________________
consensus                   AATCACCACCAGATACAAAGTTTGAGAGGAGAGAGAGAGAAGCTAAAAGAGTTT
 
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JMFF006A16-           TTGGGAGAGAGAGAAGCTAAAAGAGTTTTTGGAGAGAGAGAGAGAGAGATAGAAAGATGA
                      ____________________________________________________________
consensus             TTGGGAGAGAGAGAAGCTAAAAGAGTTTTTGGAGAGAGAGAGAGAGAGATAGAAAGATGA
 
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JMFF006A16-           AGCTCTCACTGAAGGTCCAAGACTCCCAATGCTCTCCGCCGCCGCAACCACCGCCGTCGC
JMFS073B11-                                                             CCGCCGTCGC
                      ____________________________________________________________
consensus             AGCTCTCACTGAAGGTCCAAGACTCCCAATGCTCTCCGCCGCCGCAACCACCGCCGTCGC
 
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JMFF006A16-           AGCTGTTGAGCAGCCACCAAAAACAGCCGGAGACGCGGCCGCTTCTCCTCGGAGCTAAAA
JMFS073B11-           AGCTGTTGAGCAGCCACCAAAAACAGCCGGAGACGCGGCCGCTTCTCCTCGGAGCTAAAA
                      ____________________________________________________________
consensus             AGCTGTTGAGCAGCCACCAAAAACAGCCGGAGACGCGGCCGCTTCTCCTCGGAGCTAAAA
 
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JMFF006A16-           TCCCGATCACCATCTTCAACCTTCCGTTTCTCTCCGGCTTCTCCACCACTACACACCACC
JMFS073B11-           TCCCGATCACCATCTTCAACCTTCCGTTTCTCTCCGGCTTCTCCACCACTACACACCACC
                      ____________________________________________________________
consensus             TCCCGATCACCATCTTCAACCTTCCGTTTCTCTCCGGCTTCTCCACCACTACACACCACC
 
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JMFF006A16-           CCTCCGACCTCTCCCTCTCCCTCGCCACCAACTTCTCCTCCGGCCCGACTCTTAAGCTCG
JMFS073B11-           CCTCCGACCTCTCCCTCTCCCTCGCCACCAACTTCTCCTCCGGCCCGACTCTTAAGCTCG
                      ____________________________________________________________
consensus             CCTCCGACCTCTCCCTCTCCCTCGCCACCAACTTCTCCTCCGGCCCGACTCTTAAGCTCG
 
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JMFF006A16-           CCTACACCGCCACCTCTTCCTCCTCATCGACCTCCGCCCCCGCTGCGCCTCCGCTAACGC
JMFS073B11-           CCTACACCGCCACCTCTTCCTCCTCATCGACCTCCGCCCCCGCTGCGCCTCCGCTAACGC
                      ____________________________________________________________
consensus             CCTACACCGCCACCTCTTCCTCCTCATCGACCTCCGCCCCCGCTGCGCCTCCGCTAACGC
 
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JMFF006A16-           TCACCCTCAAATCGGGGATTGGCGTCTACGGCTCGCCTAAGAACTCTCCTCTTATCATCT
JMFS073B11-           TCACCCTCAAATCGGGGATTGGCGTCTACGGCTCGCCTAAGAACTCTCCTCTTATCATCT
                      ____________________________________________________________
consensus             TCACCCTCAAATCGGGGATTGGCGTCTACGGCTCGCCTAAGAACTCTCCTCTTATCATCT
 
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JMFF006A16-           CCGCCAATTTCTCTTTCTCCCCTCATAGCCCCCATTCTAATCCCACTTTCTCTTTGCTCC
JMFS073B11-           CCGCCAATTTCTCTTTCTCCCCTCATAGCCCCCATTCTAATCCCACTTTCTCTTTGCTCC
                      ____________________________________________________________
consensus             CCGCCAATTTCTCTTTCTCCCCTCATAGCCCCCATTCTAATCCCACTTTCTCTTTGCTCC
 
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JMFF006A16-           TCAAACCCCAGCTCGG                                            
JMFS073B11-           TCAAACCCCAGCTCGGCTCCTTCTCTCTGAAGAAGGCCACTTCTTCGAACCCTAACCCTA
                      ____________________________________________________________
consensus             TCAAACCCCAGCTCGGCTCCTTCTCTCTGAAGAAGGCCACTTCTTCGAACCCTAACCCTA
 
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JMFS073B11-           ATCCCAAACAGAACGCGGAGGCAAATTCGTTTGGGTTTGTTCCGTTGGAGAGGCCTATGA
rJMFF006A16+          ATCCCAAACAGAACGCGGAGGCAAATTCGTTTGGGTTTGTTCCGTTGGAGAGGCCTATGA
rJMFF027B04+          ATCCCAAACAGAACGCGGAGGCAAATTCGTTTGGGTTTGTTCCGTTGGAGAGGCCTATGA
                      ____________________________________________________________
consensus             ATCCCAAACAGAACGCGGAGGCAAATTCGTTTGGGTTTGTTCCGTTGGAGAGGCCTATGA
 
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JMFS073B11-           GCTTAAAGGACTTTTCCTTTGAGGATTATGGTAAAGACTCGATCTTTACGGGGATTTCGG
rJMFF006A16+          GCTTAAAGGCCTTTTCCTTTGAGGATTATGGTAAAGACTCGATCTTTACGGGGATTTCGG
rJMFF027B04+          GCTTAAAGGACTTTTCCTTTGAGGATTATGGTAAAGACTCGATCTTTACGGGGATTTCGG
                      ____________________________________________________________
consensus             GCTTAAAGGACTTTTCCTTTGAGGATTATGGTAAAGACTCGATCTTTACGGGGATTTCGG
 
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JMFS073B11-           TGATGGCCAGGACTGAAATGCCAGTAACGAAGACGGTTTTGATGAATTGCCGATGGGGTG
rJMFF006A16+          TGATGGCCAGGACTGAAATGCCAGTAACGAAGACGGTTTTGATGAATTGCCGATGGGGTG
rJMFF027B04+          TGATGGCCAGGACTGAAATGCCAGTAACGAAGACGGTTTTGATGAATTGCCGATGGGGTG
                      ____________________________________________________________
consensus             TGATGGCCAGGACTGAAATGCCAGTAACGAAGACGGTTTTGATGAATTGCCGATGGGGTG
 
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JMFS073B11-           TGAATTTTCCGGAGGATTTGGGGAAACGAATG                            
rJMFF006A16+          TGAATTTTCCGGAGGATTTGGGGAAACGAATGCCGCATCTGACTCTGAATAAGATTGGGA
rJMFF027B04+          TGAATTTTCCGGAGGATTTGGGGAAACGAATGCCGCATCTGACTCTGAATAAGATTGGGA
                      ____________________________________________________________
consensus             TGAATTTTCCGGAGGATTTGGGGAAACGAATGCCGCATCTGACTCTGAATAAGATTGGGA
 
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rJMFF006A16+          TTGAGAGGGTTGATGAGGTTATTAAGGAGGTGAAGGAGAAGAAGAGTGAGAGCAGTGGGG
rJMFF027B04+          TTGAGAGGGTTGATGAGGTTATTAAGGAGGTGAAGGAGAAGAAGAGTGAGAGCAGTGGGG
                      ____________________________________________________________
consensus             TTGAGAGGGTTGATGAGGTTATTAAGGAGGTGAAGGAGAAGAAGAGTGAGAGCAGTGGGG
 
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rJMFF006A16+          GTGAGGTGGAGTTGTTGAAAGGAATGTGTTTTTGGATGAAGAGGGAATTGGATACACTGC
rJMFF027B15+                                                                  CTGC
rJMFF027B04+          GTGAGGTGGAGTTGTTGAAAGGAATGTGTTTTTGGATGAAGAGGGAATTGGATACACTGC
                      ____________________________________________________________
consensus             GTGAGGTGGAGTTGTTGAAAGGAATGTGTTTTTGGATGAAGAGGGAATTGGATACACTGC
 
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rJMFF006A16+          AGGGAGAGAACCGAGAGATGAAGGCTAAGTTGGAAGAAATGAAAATGGGGCATTTGCTGA
rJMFF027B15+          AGGGAGAGACCCGAGAGATGAAGGCTAAGTTGGAAGAAATGAAAATGGGGCATTTGTTGA
rJMFF027B04+          AGGGAGAGAACCGAGAGATGAAGGCTAAGTTGGAAGAAATGAAAATGGGGCATTTGCTGA
                      ____________________________________________________________
consensus             AGGGAGAGAACCGAGAGATGAAGGCTAAGTTGGAAGAAATGAAAATGGGGCATTTGCTGA
 
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rJMFF006A16+          GAACTGGTGGTTCTCATGGTCGGAGAGAAGAGAGTGTTGGGAAGAAGGTGGTTAGTCCAA
rJMFF027B15+          GAACTGGTGGTTCTCATGGTCGGAGAGAAGAGAGTGTTGGGAAGAAGGTGGTTAGTCCAA
rJMFF027B04+          GAACTGGTGGTTCTCATGGTCGGAGAGAAGAGAGTGTTGGGAAGAAGGTGGTTAGTCCAA
                      ____________________________________________________________
consensus             GAACTGGTGGTTCTCATGGTCGGAGAGAAGAGAGTGTTGGGAAGAAGGTGGTTAGTCCAA
 
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rJMFF006A16+          TTGTTGAGAGTTCGAGTGGTTTTGAGCAATGGAGGAACAAGAAGAATCCCGGGGGAGACG
rJMFF027B15+          TTGTTGAGAGTTCGAGTGGTTTTGAGCAATGGAGGAACAAGAAGAATCCCGGNGGAGCCG
rJMFF027B04+          TTGTTGAGAGTTCGAGTGGTTTTGAGCAATGGAGGAACAAGAAGAATCCCGGGGGAGACG
                      ____________________________________________________________
consensus             TTGTTGAGAGTTCGAGTGGTTTTGAGCAATGGAGGAACAAGAAGAATCCCGGGGGAGACG
 
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rJMFF006A16+          TTGTGAAGAAAGAGGCCAAGAAGAATGTGTCCAATGGAAACCGGGATGTCGAGAGTGAAT
rJMFF027B15+          TTGTGAAGAAAGAGGCCAAGAAGAATGTGTCCAATGGAAACCGGGATGTCGAGAGTGANT
rJMFF027B04+          TTGTGAAGAAAGAGGCCAAGAAGAATGTGTCCAATGGAAACCGGGATGTCGAGAGTGAAT
                      ____________________________________________________________
consensus             TTGTGAAGAAAGAGGCCAAGAAGAATGTGTCCAATGGAAACCGGGATGTCGAGAGTGAAT
 
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rJMFF006A16+          TGCAGAAAGCCATTGCAGCTGCTTCTTCTTCCCTCTGAGGTTAGAATTAGCTCCAGTAAC
rJMFF027B15+          TGCAGAAAGCCATTGCAGCTGCTTNTTCTTCCCTCTGAGGCTAGAATTAGCTCCAGTAAC
rJMFF027B04+          TGCAGAAAGCCATTGCAGCTGCTTCTTCTTCCCTCTGAGGTTAGAATTAGCTCCAGTAAC
                      ____________________________________________________________
consensus             TGCAGAAAGCCATTGCAGCTGCTTCTTCTTCCCTCTGAGGTTAGAATTAGCTCCAGTAAC
 
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rJMFF006A16+          TAACTAGTAAATATGCTCTGCTACTGTATATATGCCACTTGCTT                
rJMFF027B15+          TAACTAGTAAATATGCTCTGCTACTGTATATATGCCACTTGCTT                
rJMFF027B04+          TAACTAGTAAATATGCTCTGCTACTGTATATATGCCACTTGCTTTAAACTCAACTCAATT
                      ____________________________________________________________
consensus             TAACTAGTAAATATGCTCTGCTACTGTATATATGCCACTTGCTTTAAACTCAACTCAATT