Contig 004035:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002I22Sequence488011657 (6)gb|ABB40579.2|2e-641-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]743004035 (4)gb|ABB40579.2|7e-1171-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]
JMFF020F11Sequence581011657 (6)gb|ABB40579.2|4e-881-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]734004035 (4)gb|ABB40579.2|6e-1171-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]
JMFF026G16Sequence517011657 (6)gb|ABB40579.2|4e-721-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]828004035 (4)gb|ABB40579.2|2e-1281-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]
JMFF030G19Sequence446011657 (6)gb|ABB40579.2|8e-571-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]638004035 (4)gb|ABB40579.2|3e-921-aminocyclopropane-1-carboxylate synthase [Ipomoea nil]

Alignment

This contig is upended


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rJMFF026G16+                     TTCATCAGCATTGCCGAGATAATCCAGGAAGTCCAATGCAATCCTGACC
                      ____________________________________________________________
consensus                        TTCATCAGCATTGCCGAGATAATCCAGGAAGTCCAATGCAATCCTGACC
 
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rJMFF020F11+            ATACACATCGTGTATAGTCTTTCCAAGGATTTGGGGTTCCCAGGATTCAGAGTCGGGG
rJMFF002I22+            ATACACATCGTGTATAGTCTTTCCAAGGATTTGGGGTTCCCAGGATTCAGAGTCGGGG
rJMFF026G16+          TTATACACATCGTGTATAGTCTTTCCAAGGATTTGGGGTTCCCAGGATTCAGAGTCGGGG
                      ____________________________________________________________
consensus             TTATACACATCGTGTATAGTCTTTCCAAGGATTTGGGGTTCCCAGGATTCAGAGTCGGGG
 
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rJMFF020F11+          TAATCTACTCCTACAACGACGCAGTGGTGAGCTGCGCCAGAAAAATGTCCAGTTTCGGGT
rJMFF002I22+          TAATCTACTCNTACAACGACGCAGTGGTGAGCTGCGCCAGAAAAATGTCCAGTTTCGGGT
rJMFF030G19+                                           GCGCCAGAAAAATGTCCAGTTTCGGGT
rJMFF026G16+          TAATCTACTCCTACAACGACGCAGTGGTGAGCTGCGCCAGAAAAATGTCCAGTTTCGGGT
                      ____________________________________________________________
consensus             TAATCTACTCCTACAACGACGCAGTGGTGAGCTGCGCCAGAAAAATGTCCAGTTTCGGGT
 
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rJMFF020F11+          TAGTTTCAACGCAGACACAACACCTGATTGCTGCAATGCTATCAGACGATGAATTCATGG
rJMFF002I22+          TAGTTTCAACGCAGACACAACACCTGATTGCTGCAATGCTATCAGACGATGAATTCATGG
rJMFF030G19+          TAGTTTCAACGCAGACACAACACCTGATTGCTGCAATGCTATCAGACGATGAATTCATGG
rJMFF026G16+          TAGTTTCAACGCAGACACAACACCTGATTGCTGCAATGCTATCAGACGATGAATTCATGG
                      ____________________________________________________________
consensus             TAGTTTCAACGCAGACACAACACCTGATTGCTGCAATGCTATCAGACGATGAATTCATGG
 
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rJMFF020F11+          AAGATTTCATTAAACAAAGCTCGGAAAGGCTAAGGAAGAGGCACGAGAGCTTCACGCGAG
rJMFF002I22+          AAGATTTCATTAAACAAAGCTCGGAAAGGCTAAGGAAGAGGCACGAGAGCTTCACGCGAG
rJMFF030G19+          AAGATTTCATTAAACAAAGCTCGGAAAGGCTAAGGAAGAGGCACGAGAGCTTCACGCGAG
rJMFF026G16+          AAGATTTCATTAAACAAAGCTCGGAAAGGCTAAGGAAGAGGCACGAGAGCTTCACGCGAG
                      ____________________________________________________________
consensus             AAGATTTCATTAAACAAAGCTCGGAAAGGCTAAGGAAGAGGCACGAGAGCTTCACGCGAG
 
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rJMFF020F11+          GACTAGCCCAAGTGGGGATAGAAACTCTGAAGAGCAACGGCGGGCTGTTTGTGTGGATGA
rJMFF002I22+          GACTAGCCCAAGTGGGGATAGAAACTCTGAAGAGCAACGGCGGGCTGTTTGTGTGGATGA
rJMFF030G19+          GACTAGCCCAAGTGGGGATAGAAACTCTGAAGAGCAACGGCGGGCTGTTTGTGTGGATGA
rJMFF026G16+          GACTAGCCCAAGTGGGGATAGAAACTCTGAAGAGCAACGGCGGGCTGTTTGTGTGGATGA
                      ____________________________________________________________
consensus             GACTAGCCCAAGTGGGGATAGAAACTCTGAAGAGCAACGGCGGGCTGTTTGTGTGGATGA
 
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rJMFF020F11+          ATTTGAGAAACCTCCTTAAAGAACCAACTTTTGCCGCAGAATTGGAGCTGTGGAGGATGA
rJMFF002I22+          ATTTGAGAAACCTCCTTAAAGAACCAACTTTTGCCGCAGAATTGGAGCTGTGGAGGATGA
rJMFF030G19+          ATTTGAGAAACCTCCTTAAAGAACCAACTTTTGCCGCAGAATTGGAGCTGTGGAGGATGA
rJMFF026G16+          ATTTGAGAAACCTCCTTAAAGAACCAACTTTTGCCGCAGAATTGGAGCTGTGGAGGATGA
                      ____________________________________________________________
consensus             ATTTGAGAAACCTCCTTAAAGAACCAACTTTTGCCGCAGAATTGGAGCTGTGGAGGATGA
 
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rJMFF020F11+          TTATTAATGAAATGAAGCTGAATGTGTCCCCTGGATGTTCGTTCCATTGCCACGAAGCTG
rJMFF002I22+          TTATTAATGAAATGAAGCTGAATGTGTCCCCTGGATGTTCGTTCCATTGCCACGAAGCTG
rJMFF030G19+          TTATTAATGAAATGAAGCTGAATGTGTCCCCTGGATGTTCGTTCCATTGCCACGAAGCTG
rJMFF026G16+          TTATTAATGAAATGAAGCTGAATGTGTCCCCTGGATGTTCGTTCCATTGCCACGAAGCTG
                      ____________________________________________________________
consensus             TTATTAATGAAATGAAGCTGAATGTGTCCCCTGGATGTTCGTTCCATTGCCACGAAGCTG
 
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rJMFF020F11+          GTTGGTTTAGAGTGTGCTTTGCCAATATGGACGATGAAACCATGAGGGTGGCGCTGACGA
rJMFF002I22+          GTTGGTTTAGAGTGTGCTTTGCCAATATGGACGATGAAACCATGAGGGTGGCGCTGACGA
rJMFF030G19+          GTTGGTTTAGAGTGTGCTTTGCCAATATGGACGATGAAACCATGAGGGTGGCGCTGACGA
rJMFF026G16+          GTTGGTTTAGAGTGTGCTTTGCCAATATGGACGATGAAACCATGAGGGTGGCGCTGACGA
                      ____________________________________________________________
consensus             GTTGGTTTAGAGTGTGCTTTGCCAATATGGACGATGAAACCATGAGGGTGGCGCTGACGA
 
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rJMFF020F11+          GGATCCTGAAGTTTGTGCTTCAGTGGAAGGGGGCGGCGGCGAAGAAGAAGCAGTGCAGGA
rJMFF002I22+          GGATCCTGAAGTTTGTGCTTCAGTGGAAGGGGGCGGCGGCGAAGAAGAAGCAGTGCAGGA
rJMFF030G19+          GGATCCTGAAGTTTGTGCTTCAGTGGAAGGGGGCGGCGGCGAAGAAGAAGCAGTGCAGGA
rJMFF026G16+          GGATCCTGAAGTTTGTGCTTCAGTGGAAGGGGGCGGCGGCGAAGAAGAAGCAGTGCAGGA
                      ____________________________________________________________
consensus             GGATCCTGAAGTTTGTGCTTCAGTGGAAGGGGGCGGCGGCGAAGAAGAAGCAGTGCAGGA
 
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rJMFF020F11+          GGAATTTGAAGATCAGCTTATCCTTTCGGCGATTGGAGGATTGCATGATGTCCTCTCCTC
rJMFF002I22+          GGAATTTGAAGATCAGCTTATCCTTTCGGCGATTGGAGGATTGCATGATGTCCTCTCCTC
rJMFF030G19+          GGAATTTGAAGATCAGCTTATCCTTTCGGCGATTGGAGGATTGCATGATGTCCTCTCCTC
rJMFF026G16+          GGAATTTGAAGATCAGCTTATCCTTTCGGCGATTGGAGGATTGCATGATGTCCTCTCCTC
                      ____________________________________________________________
consensus             GGAATTTGAAGATCAGCTTATCCTTTCGGCGATTGGAGGATTGCATGATGTCCTCTCCTC
 
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rJMFF020F11+          ACTCTCCGTCCATGCATTCGCCATTGGTTCAAGCGACCACTTAATCAAACAAGGATCACT
rJMFF002I22+          ACTCTCCGTCCATGCATTCGCCATTGGTTCAAGCGACCACTTAATCAAACAAGGATCACT
rJMFF030G19+          ACTCTCCGTCCATGCATTCGCCATTGGTTCAAGCGACCACTTAATCAAACAAGGATCACT
rJMFF026G16+          ACTCTCCGTCCATGCATTCGCCATTGGTTCAAGCGACCACTTAATCAAACAAGGATCACT
                      ____________________________________________________________
consensus             ACTCTCCGTCCATGCATTCGCCATTGGTTCAAGCGACCACTTAATCAAACAAGGATCACT
 
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rJMFF020F11+          ACGTACAACACC-AAAAATATAGTATAAGGCTATTAGCAATAAGTGTAGTCCTNTTGTGT
rJMFF002I22+          ACGTACAACACCAAAAAATATAGTATAAGGCTATTAGCAATAAGTGTAGTCCTTTTGTGT
rJMFF030G19+          ACGTACAACACC-AAAAATATAGTATAAGGCTATTAGCAATAAGTGTAGTCCTTTTGTGT
rJMFF026G16+          ACGTACAACACC-AAAAATATAGTATAAGGCTATTAGCAATAAGTGTAGTCCTTTTGTGT
                      ____________________________________________________________
consensus             ACGTACAACACC-AAAAATATAGTATAAGGCTATTAGCAATAAGTGTAGTCCTTTTGTGT
 
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rJMFF020F11+          CAATGCATATTA                                                
rJMFF002I22+          CAATGCATATTATAATTACAAATAA                                   
rJMFF030G19+          CAATGCATATTA                                                
rJMFF026G16+          CAATGCATATTATAATTACAAATAATAACTAAATTAAGGAATAACAGAGGACAACATCAA
                      ____________________________________________________________
consensus             CAATGCATATTATAATTACAAATAATAACTAAATTAAGGAATAACAGAGGACAACATCAA