Contig 004034:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003N24Sequence555000955 (12)ref|XP_011015557.1|2e-88PREDICTED: selenium-binding protein 1-like [Populus euphratica]700004034 (10)emb|CDP15102.1|1e-113unnamed protein product [Coffea canephora]
JMFF012E15Sequence543000955 (12)ref|XP_011015557.1|2e-86PREDICTED: selenium-binding protein 1-like [Populus euphratica]751004034 (10)emb|CDP15102.1|1e-125unnamed protein product [Coffea canephora]
JMFF023K18Sequence473000955 (12)ref|XP_011015557.1|7e-72PREDICTED: selenium-binding protein 1-like [Populus euphratica]628004034 (10)emb|CDP15102.1|5e-103unnamed protein product [Coffea canephora]
JMFF026D19Sequence537000955 (12)ref|XP_011015557.1|1e-75PREDICTED: selenium-binding protein 1-like [Populus euphratica]745004034 (10)emb|CDP15102.1|3e-113unnamed protein product [Coffea canephora]
JMFF035F08Sequence580000955 (12)ref|XP_011015557.1|1e-87PREDICTED: selenium-binding protein 1-like [Populus euphratica]724004034 (10)emb|CDP15102.1|8e-120unnamed protein product [Coffea canephora]
JMFF035H02Sequence575000955 (12)ref|XP_011015557.1|5e-86PREDICTED: selenium-binding protein 1-like [Populus euphratica]721004034 (10)emb|CDP15102.1|4e-119unnamed protein product [Coffea canephora]
JMFF041M08Sequence633000955 (12)ref|XP_011015557.1|7e-101PREDICTED: selenium-binding protein 1-like [Populus euphratica]611004034 (10)emb|CDP15102.1|3e-87unnamed protein product [Coffea canephora]
JMFF044K03Sequence643000955 (12)ref|XP_011015557.1|3e-113PREDICTED: selenium-binding protein 1-like [Populus euphratica]579004034 (10)emb|CDP15102.1|8e-82unnamed protein product [Coffea canephora]
JMFF050K23Sequence607000955 (12)ref|XP_011015557.1|1e-81PREDICTED: selenium-binding protein 1-like [Populus euphratica]566004034 (10)emb|CDP15102.1|2e-77unnamed protein product [Coffea canephora]
JMSF045M13Sequence778000955 (12)ref|XP_011015557.1|2e-119PREDICTED: selenium-binding protein 1-like [Populus euphratica]752004034 (10)emb|CDP15102.1|1e-133unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF045M13+                                              CATCTGAAGCGACCGGGTTCGTGG
                      ____________________________________________________________
consensus                                                 CATCTGAAGCGACCGGGTTCGTGG
 
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rJMSF045M13+          GGTGTGCATTGACCAGCAACATGGTTCGTTTCTTCAAGAATCCAGATGACTCGTGGAG-C
rJMFF012E15+                      CCAGCAACATGGTTCGTTTCTTCAAGAATCCAGATGACTCGTGGAG-C
rJMFF003N24+                                                                    GC
rJMFF035H02+                                              AGAATCCAGATGACTCGTGGAG-C
rJMFF035F08+                                             AAGAATCCAGATGACTCGTGGAG-C
rJMFF026D19+                                             AAGAATCCAGATGACTCGTGGAGCC
                      ____________________________________________________________
consensus             GGTGTGCATTGACCAGCAACATGGTTCGTTTCTTCAAGAATCCAGATGACTCGTGGAG-C
 
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rJMSF045M13+          CATGAGCTAGCAGTGTCAGTGAAAGCACTGAAAGTCCAGAATTGGATTCTCCCTGAAATG
rJMFF012E15+          CATGAGCTAGCAGTGTCAGTGAAAGCACTGAAAGTCCAGAATTGGATTCTCCCTGAAATG
rJMFF003N24+          CATGAGCTAGCAGTGTCAGTGAAAGCACTGAAAGTCCAGAATTGGATTCTCCCTGAAATG
rJMFF023K18+                                                                GAAATG
rJMFF035H02+          CATGAGCTAGCAGTGTCAGTGAAAGCACTGAAAGTCCAGAATTGGATTCTCCCTGAAATG
rJMFF035F08+          CATGAGCTAGCAGTGTCAGTGAAAGCACTGAAAGTCCAGAATTGGATTCTCCCTGAAATG
rJMFF026D19+          CATGAGCTAGCAGTGTCAGTGAAAGCACTGAAAGTCCAGAATTGGATTCTCCCTGAAATG
                      ____________________________________________________________
consensus             CATGAGCTAGCAGTGTCAGTGAAAGCACTGAAAGTCCAGAATTGGATTCTCCCTGAAATG
 
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rJMSF045M13+          CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
rJMFF012E15+          CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
rJMFF003N24+          CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
rJMFF023K18+          CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
rJMFF035H02+          CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
rJMFF035F08+          CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
rJMFF041M08+                                                        TCTACTTTGCGAAT
rJMFF026D19+          CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
                      ____________________________________________________________
consensus             CCTGGGCTCATTACTGATTTCCTGATCTCGTTGGATGATCGCTTCCTCTACTTTGCGAAT
 
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rJMSF045M13+          TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF012E15+          TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF003N24+          TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF023K18+          TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF035H02+          TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF035F08+          TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF044K03+                          TTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF050K23+                                      ACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF041M08+          TGGCTGCNCGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
rJMFF026D19+          TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
                      ____________________________________________________________
consensus             TGGCTGCACGGCGATATTAGACAGTATAACATCGAGGATCGAGCAAACCCGAAGCTGGCG
 
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rJMSF045M13+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF012E15+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF003N24+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF023K18+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF035H02+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF035F08+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF044K03+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF050K23+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF041M08+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
rJMFF026D19+          GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
                      ____________________________________________________________
consensus             GGGCAAGTATGGGTTGGTGGATTGATCCGAAAAGGAAGCTCTGTAGTTGCAGAGGCAGAA
 
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rJMSF045M13+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
rJMFF012E15+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
rJMFF003N24+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
rJMFF023K18+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAATAAGCTGAGAGGAGGA
rJMFF035H02+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
rJMFF035F08+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
rJMFF044K03+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAATAAGCTGAGAGGAGGA
rJMFF050K23+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
rJMFF041M08+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
rJMFF026D19+          GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
                      ____________________________________________________________
consensus             GATGGCACAACATACCAGGTGGATGTCCCAGATATCCAGGGAAAGAAGCTGAGAGGAGGA
 
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rJMSF045M13+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF012E15+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF003N24+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF023K18+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF035H02+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF035F08+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF044K03+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF050K23+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF041M08+          CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
rJMFF026D19+          CCGCGGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
                      ____________________________________________________________
consensus             CCGCAGATGATACAGCTGAGCCTAGACGGGAAGAGGCTATACGCGACAAACTCGCTGTAC
 
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rJMSF045M13+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF012E15+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF003N24+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF023K18+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF035H02+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF035F08+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF044K03+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF050K23+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF041M08+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
rJMFF026D19+          AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
                      ____________________________________________________________
consensus             AGCACCTGGGACAAGCAGTTCTATCCAGATCTGGTGGAGAAAGGCTCCCACATTATACAG
 
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rJMSF045M13+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF012E15+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF003N24+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF023K18+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF035H02+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF035F08+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF044K03+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF050K23+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF041M08+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
rJMFF026D19+          ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
                      ____________________________________________________________
consensus             ATAGATGTGGACACACACAAAGGCGGGCTCTCCATTAACCCTAACTTCTTCGTCGACTTT
 
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rJMSF045M13+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF012E15+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF003N24+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF023K18+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF035H02+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF035F08+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF044K03+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF050K23+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF041M08+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
rJMFF026D19+          GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
                      ____________________________________________________________
consensus             GGAGATGAGCCGGATGGTCCAGCCTTGGCTCATGAGATGAGGTATCCTGGTGGTGACTGC
 
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rJMSF045M13+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF012E15+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF003N24+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF023K18+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF035H02+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF035F08+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF044K03+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF050K23+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF041M08+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
rJMFF026D19+          ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
                      ____________________________________________________________
consensus             ACTTCTGATATCTGGATTTAATCAATAAAGCCTTGTAGCCACTATCCATGGGATATTAGC
 
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rJMSF045M13+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF012E15+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF003N24+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF023K18+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF035H02+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF035F08+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF044K03+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF050K23+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF041M08+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
rJMFF026D19+          ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
                      ____________________________________________________________
consensus             ATTTCATGCATGTTAAATAACCCAGCTGGGATATGCATGTTTAATTTCATCAAACACATG
 
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rJMSF045M13+          TACTCAGTC                                                   
rJMFF012E15+          TACTCAGTCCCTGTCTCATGATT                                     
rJMFF003N24+          TACTCAGTCCCTGTCTCATGATT                                     
rJMFF023K18+          TACTCAGTCCCTGTCTCATGAT                                      
rJMFF035H02+          TACTCAGTCCCTGTCTCATGATT                                     
rJMFF035F08+          TACTCAGTCCCTGTCTCATGATTTCTCTAATAATT                         
rJMFF044K03+          TACTCAGTCCCTGTCTCATGATTTCTCTAATAATTTCAAATAAATGAT            
rJMFF050K23+          TACTCAGTCCCTGTCTCATGATTTCTCTAATAATTTCAAATAAATGAT            
rJMFF041M08+          TACTCAGTCCCTGTCTCATGATTTCTCTAATAATTTCAAATAAATGAT            
rJMFF026D19+          TACTCAGTCCCTGTCTCATGATTTCTCTAATAATTTCAAATAAATGATTACGTCTCCCTT
                      ____________________________________________________________
consensus             TACTCAGTCCCTGTCTCATGATTTCTCTAATAATTTCAAATAAATGATTACGTCTCCCTT