Contig 004024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024E17Sequence543001683 (3)771004024 (2)ref|XP_004486986.1|6e-58PREDICTED: pumilio homolog 3-like [Cicer arietinum]
JMFF040L03Sequence531001683 (3)ref|XP_011089489.1|7e-59PREDICTED: pumilio homolog 2-like [Sesamum indicum]768004024 (2)gb|KDO72812.1|1e-96hypothetical protein CISIN_1g041401mg [Citrus sinensis]

Alignment

This contig is upended


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rJMFF040L03+                      TAAAGTCATGGAAGAGATTCTAGGATCTGTAAGCACATTGGCACAGGA
                      ____________________________________________________________
consensus                         TAAAGTCATGGAAGAGATTCTAGGATCTGTAAGCACATTGGCACAGGA
 
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rJMFF040L03+          TCAGTATGGTAATTATGTTGTACAGCATGTNCTGGAGCATGGAAAGCCGCATGAGAGGTC
                      ____________________________________________________________
consensus             TCAGTATGGTAATTATGTTGTACAGCATGTNCTGGAGCATGGAAAGCCGCATGAGAGGTC
 
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rJMFF040L03+          TACTATTATTAAGGAATTAGCTGGTAACATTGTTCAGATGAGCCAGCAGAAGTTCGCTTC
                      ____________________________________________________________
consensus             TACTATTATTAAGGAATTAGCTGGTAACATTGTTCAGATGAGCCAGCAGAAGTTCGCTTC
 
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rJMFF040L03+          AAATGTTGTAGAGAAATGCTTGACATTCGGTAATGCTAGTGAAAGACAACTTCTCGTGAA
rJMFF024E17+                   AGAGAAATGCTTGACATTCGGTAATGCTAGTGAAAGACAACTTCTCGTGAA
                      ____________________________________________________________
consensus             AAATGTTGTAGAGAAATGCTTGACATTCGGTAATGCTAGTGAAAGACAACTTCTCGTGAA
 
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rJMFF040L03+          TGAGATGCTTGGCACAACTGATGAAANTGAGCCACTTCAGGCGATGATGAAAGATCAGTT
rJMFF024E17+          TGAGATGCTTGGCACAACTGATGAAAATGAGCCACTTCAGGCGATGATGAAAGATCAGTT
                      ____________________________________________________________
consensus             TGAGATGCTTGGCACAACTGATGAAAATGAGCCACTTCAGGCGATGATGAAAGATCAGTT
 
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rJMFF040L03+          TGCAAATTACGTCGTACAAAAAGTTTTGGAAACTTGCAGTGATCAGGAGCGTGAACTGAT
rJMFF024E17+          TGCAAATTACGTCGTACAAAAAGTTTTGGAAACTTGCAGTGATCAGGAGCGTGAACTGAT
                      ____________________________________________________________
consensus             TGCAAATTACGTCGTACAAAAAGTTTTGGAAACTTGCAGTGATCAGGAGCGTGAACTGAT
 
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rJMFF040L03+          CCTTTCACGCATAAAAGTCCACTTGAATGCATTGAAGAAATACACCTACGGGAAGCACAT
rJMFF024E17+          CCTTTCACGCATAAAAGTCCACTTGAATGCATTGAAGAAATACACCTACGGGAAGCACAT
                      ____________________________________________________________
consensus             CCTTTCACGCATAAAAGTCCACTTGAATGCATTGAAGAAATACACCTACGGGAAGCACAT
 
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rJMFF040L03+          TGTTGCACGTGTTGAGAAACTCGTTGCTGCCGGGGAAAGGAGAATGGCTGCTCAGACTCC
rJMFF024E17+          TGTTGCACGTGTTGAGAAACTCGTTGCTGCCGGGGAAAGGAGAATGGCTGCTCAGACTCC
                      ____________________________________________________________
consensus             TGTTGCACGTGTTGAGAAACTCGTTGCTGCCGGGGAAAGGAGAATGGCTGCTCAGACTCC
 
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rJMFF040L03+          AAATCCCGCATAGATCTTCATAGAAAAGAAAGATGTACAGCTAACCGAGGCTAGTTTGAG
rJMFF024E17+          AAATCCCGCATAGATCTTCATAGAAAAGAAAGATGTACAGCTAACCGAGGCTAGTTTGAG
                      ____________________________________________________________
consensus             AAATCCCGCATAGATCTTCATAGAAAAGAAAGATGTACAGCTAACCGAGGCTAGTTTGAG
 
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rJMFF040L03+          CTGCCTCTCTCCCTTTCTTTTCTCGATACCTAGTTCTCTGGCTCCTCCGTGCCCTTGTTC
rJMFF024E17+          CTGCCTCTCTCCCTTTCTTTTCTCGATACCTAGTTCTCTGGCTCCTCCGTGCCCTTGTTC
                      ____________________________________________________________
consensus             CTGCCTCTCTCCCTTTCTTTTCTCGATACCTAGTTCTCTGGCTCCTCCGTGCCCTTGTTC
 
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rJMFF040L03+          CGTGATCTGTGATTGCAAATAAAGTTGTTGCTCCTACTAGAGATCTGTACATTATGTAGC
rJMFF024E17+          CGTGATCTGTGATTGCAAATAAAGTTGTTGCTCCTACTAGAGATCTGTACATTATGTAGC
                      ____________________________________________________________
consensus             CGTGATCTGTGATTGCAAATAAAGTTGTTGCTCCTACTAGAGATCTGTACATTATGTAGC
 
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rJMFF040L03+          TTAAAGAAGTCTCTATACACAGAACTAAGTAAAGCTAAAAGCCAGGCTGTTACATATTCT
rJMFF024E17+          TTAAAGAAGTCTCTATACACAGAACTAAGTAAAGCTAAAAGCCAGGCTGTTACATATTCT
                      ____________________________________________________________
consensus             TTAAAGAAGTCTCTATACACAGAACTAAGTAAAGCTAAAAGCCAGGCTGTTACATATTCT
 
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rJMFF040L03+          GATGGCTGTTGCAGAGGAAGTGAAGCTTCTATTATAAACCATGTAAAAATGATACCAACC
rJMFF024E17+          GATGGCTGTTGCAGAGGAAGTGAAGCTTCTATTATAAACCATGTAAAAATGATACCAACC
                      ____________________________________________________________
consensus             GATGGCTGTTGCAGAGGAAGTGAAGCTTCTATTATAAACCATGTAAAAATGATACCAACC
 
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rJMFF024E17+          TGGCCATAGTAGTTTTTATATGATCAACGTGACTGTACAAATGTTACCATGTTGAGAGAT
                      ____________________________________________________________
consensus             TGGCCATAGTAGTTTTTATATGATCAACGTGACTGTACAAATGTTACCATGTTGAGAGAT
 
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rJMFF024E17+          ATGATGTTTTAGGCATGGCTGGCCAGAGTTTTCATGTATGCTACTTAGTATTTATCATGT
                      ____________________________________________________________
consensus             ATGATGTTTTAGGCATGGCTGGCCAGAGTTTTCATGTATGCTACTTAGTATTTATCATGT
 
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rJMFF024E17+          TCTTTTAATGCTGAGTTATATGTTTTGTATGCCTCAATCTTATATGCTAAAAGCCCAAAA
                      ____________________________________________________________
consensus             TCTTTTAATGCTGAGTTATATGTTTTGTATGCCTCAATCTTATATGCTAAAAGCCCAAAA