Contig 004020:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023C07Sequence408011544 (2)gb|KJB78284.1|1e-09hypothetical protein B456_012G187800 [Gossypium raimondii]665004020 (3)ref|XP_010317101.1|7e-105PREDICTED: probable pectate lyase P59 [Solanum lycopersicum]
JMFN008I10Sequence631004020 (3)gb|AAB69766.1|1e-53putative pectate lyase Nt59 [Nicotiana tabacum]
JMFN011H20Sequence633004020 (3)ref|XP_010317101.1|3e-102PREDICTED: probable pectate lyase P59 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFN008I10+                                                         AATAAAAACCAAAG
                      ____________________________________________________________
consensus                                                           AATAAAAACCAAAG
 
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JMFN008I10+           TGTAAAGATCGAAACAATTACAAAACTTCCTAATAACTTGTTTGGACTGATGAGCTTACA
                      ____________________________________________________________
consensus             TGTAAAGATCGAAACAATTACAAAACTTCCTAATAACTTGTTTGGACTGATGAGCTTACA
 
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JMFN008I10+           AAGAGGACAACGGCTACTTTGCTTTGTGGGTAAGTAGAGTAATAATTAGGTAATTGTTGG
                      ____________________________________________________________
consensus             AAGAGGACAACGGCTACTTTGCTTTGTGGGTAAGTAGAGTAATAATTAGGTAATTGTTGG
 
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JMFN008I10+           GAGTCAAAAGGAAATTTTATGAGGGGTTTAAGTGATCCAACCAGGCTAGGCGGTCCATCA
                      ____________________________________________________________
consensus             GAGTCAAAAGGAAATTTTATGAGGGGTTTAAGTGATCCAACCAGGCTAGGCGGTCCATCA
 
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JMFN008I10+           GAAACACCAAGAGAAGTGTGAATAATAAAATAATATTGCATGGGTGGCCGGTCTAGAATG
JMFN011H20+                                                                  GAATG
rJMFF023C07-                                                       GGCCGGCCTGGAATG
                      ____________________________________________________________
consensus             GAAACACCAAGAGAAGTGTGAATAATAAAATAATATTGCATGGGTGGCCGGTCTGGAATG
 
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JMFN008I10+           CAATAATGCAATCTAACAGGGAGATCCTACTCTGCAATTAAGTGCCCCTGCGAACCTAGT
JMFN011H20+           CAATAATGCAATCTAACAAGGCGATCCTACTCTGCAATTAAGCGCCCCTGCGAACCTAGT
rJMFF023C07-          CAATAATGCAATCTAACAGGGAGATCCTACTCTGCAATTAAGTGCCCCTGCGAACCTAGT
                      ____________________________________________________________
consensus             CAATAATGCAATCTAACAGGGAGATCCTACTCTGCAATTAAGTGCCCCTGCGAACCTAGT
 
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JMFN008I10+           AAGCCAAGTCACATCCTCAGCCTTGAATGTCATTACCCCATCGTACAATTTGTGGTGCTT
JMFN011H20+           AAGCCAAGTCACATCCTCAGCCTTGAATGTCTGTACCCCATCGTACAATTCATTATGCTT
rJMFF023C07-          AAGCCAAGTCACATCCTCAGCCTTGAATGTCATTACCCCATCGTACAATTTGTGGTGCTT
                      ____________________________________________________________
consensus             AAGCCAAGTCACATCCTCAGCCTTGAATGTCATTACCCCATCGTACAATTTGTGGTGCTT
 
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JMFN008I10+           GTCCATGAAATTTGGATCCCCAGACTGAACAAAGAAAGCTCCCTCCATGTATATATCTCC
JMFN011H20+           TTTCATGAAATCTGGATCTCCCGACTGAACAAAAAAAGCTCCGCCCATATATATATCTCC
rJMFF023C07-          GTCCATGAAATTTGGATCCCCAGACTGAACAAAGAAAGCTCCCTCCATGTATATATCTCC
                      ____________________________________________________________
consensus             GTCCATGAAATTTGGATCCCCAGACTGAACAAAGAAAGCTCCCTCCATGTATATATCTCC
 
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JMFN008I10+           CTGTGATCTCCATGTCCACGTCTTCCATTCTTCCGGAGTCCCCTTAACTCTTTTAGTTAT
JMFN011H20+           CTCTGATCTCCATGTCCACGTCTTCCATTCTGCCGGAGTCCCCGCAGTTCTATGAGTTAT
rJMFF023C07-          CTGTGATCTCCATGTCCACGTCTTCCATTCTTCCGGAGTCCCCTTAACTCTTTTAGTTAT
                      ____________________________________________________________
consensus             CTGTGATCTCCATGTCCACGTCTTCCATTCTTCCGGAGTCCCCTTAACTCTTTTAGTTAT
 
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JMFN008I10+           CTCTTTTTTGTGTATGTCTGGAGGAGCAATGAATCGGTTTCCCTGACAAATGATGGTGGG
JMFN011H20+           CTCTTTTTTGTGTATGTCTGGAGGAGCGATGAATCGATTTCCCTGACAGATGATGGTGGG
rJMFF023C07-          CTCTTTTTTGTGTATGTCTGGAGGAGCAATGAATCGGTTTCCCTGACAAATGATGGTGGG
                      ____________________________________________________________
consensus             CTCTTTTTTGTGTATGTCTGGAGGAGCAATGAATCGGTTTCCCTGACAAATGATGGTGGG
 
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JMFN008I10+           GTGAGAACTCCCTCCAATGGCGTACATGTTCCAGTGTGTATAATCGTTGTTGACCACATG
JMFN011H20+           GTTAGCACTCCCTCCAATGGCGTACATGTTCCAGTGTGTGTAATCGTTGTTCACCACATG
rJMFF023C07-          GTGAGAACTCCCTCCAATGGCGTACATGTTCCAGTGTGTATAATCGTTGTTGACCACATG
                      ____________________________________________________________
consensus             GTGAGAACTCCCTCCAATGGCGTACATGTTCCAGTGTGTATAATCGTTGTTGACCACATG
 
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JMFN008I10+           AATGTATCCGTACCGAC                                           
JMFN011H20+           GATGTATCCGAACCGACATCTGGGCATCCTCTGAATCAATCTCTTCCCGAAGTGGTTGAA
rJMFF023C07-          AATGTATCCGTACCGACATCTGGGCATCCTCTGAATCAATCTCTTCCCGAAGTGGTTGAA
                      ____________________________________________________________
consensus             AATGTATCCGTACCGACATCTGGGCATCCTCTGAATCAATCTCTTCCCGAAGTGGTTGAA
 
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JMFN011H20+           AGCAATGGTGATTTGCATGATCTTGTCTTTTGTGGACAAATCATTTGCACCGAACAGCAT
rJMFF023C07-          TGCAAGCGTGATTTGCATGATCTTGTCTTTTGTGGACAAATCATTTGCACCGAACAGCAT
                      ____________________________________________________________
consensus             TGCAATGGTGATTTGCATGATCTTGTCTTTTGTGGACAAATCATTTGCACCGAACAGCAT
 
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JMFN011H20+           CACATCATTATGATCTGTGAAGTGACCATTCGAAATTGTGATGGCCGTGGATGCTTCGAT
rJMFF023C07-          CACATCATTATGATCCGTGAAGTGACCATTCGAAATTGTGATGGCCGTGGATGCTTCGAT
                      ____________________________________________________________
consensus             CACATCATTATGATCTGTGAAGTGACCATTCGAAATTGTGATGGCCGTGGATGCTTCGAT
 
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JMFN011H20+           CGCATCAATAAGCCCGTCGTAACAGTTCCTCATCGACACATGG                 
rJMFF023C07-          CGCATCAATAAGCCCGTCGTAACAGTTCCTCATCGACACATGGTCTATCCAAACATTGGA
                      ____________________________________________________________
consensus             CGCATCAATAAGCCCGTCGTAACAGTTCCTCATCGACACATGGTCTATCCAAACATTGGA