Contig 004018:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022G17Sequence526011892 (7)ref|XP_006347706.1|2e-33PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like isoform X1 [S769004018 (3)emb|CCW28845.1|3e-63DNA gyrase, partial [Arachis ipaensis]
JMSF005B23Sequence289000609 (3)531004018 (3)emb|CCW28845.1|2e-36DNA gyrase, partial [Arachis ipaensis]
JMSF031G24Sequence133011892 (7)emb|CBI29134.3|3e-15unnamed protein product [Vitis vinifera]655004018 (3)emb|CCW28845.1|5e-54DNA gyrase, partial [Arachis ipaensis]

Alignment

This contig is upended


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rJMFF022G17+                     CTTGTGAAAATGTAAGAGCACAAGGAAGGCATACTCGGGGCTCAGTTGC
                      ____________________________________________________________
consensus                        CTTGTGAAAATGTAAGAGCACAAGGAAGGCATACTCGGGGCTCAGTTGC
 
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rJMSF031G24+                         AGGGGATAAAATGGCTAGCATGGACATAATACCAGCTGCTTTGTG
rJMFF022G17+          TATGAGACTGAAAGAAGGGGATAAAATGGCTAGCATGGACATAATACCAGCTGCTTTGTG
                      ____________________________________________________________
consensus             TATGAGACTGAAAGAAGGGGATAAAATGGCTAGCATGGACATAATACCAGCTGCTTTGTG
 
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rJMSF031G24+          GAGTGATTTTGGGAAAGTTACAGAAGCTGACAAAAGTGGTAAGAGCACAAAAGGCCCATG
rJMFF022G17+          GAGTGATTTTGGGAAAGTTACAGAAGCTGACAAAAGTGGTAAGAGCACAAAAGGCCCATG
                      ____________________________________________________________
consensus             GAGTGATTTTGGGAAAGTTACAGAAGCTGACAAAAGTGGTAAGAGCACAAAAGGCCCATG
 
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rJMSF031G24+          GCTGTTGTTTGTGTCTGAGAGTGGTTTAGGAAAGAGAGTCCCTCTCAGCCGGTTTCGCAC
rJMSF005B23+                     TGTCTGAGAGTGGTTTAGGAAAGAGAGTCCCTCTCAGCCGGTTTCGCAC
rJMFF022G17+          GCTGTTGTTTGTGTCTGAGAGTGGTTTAGGAAAGAGAGTCCCTCTCAGCCGGTTTCGCAC
                      ____________________________________________________________
consensus             GCTGTTGTTTGTGTCTGAGAGTGGTTTAGGAAAGAGAGTCCCTCTCAGCCGGTTTCGCAC
 
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rJMSF031G24+          ATCACCTTTGAACAGAGTTGGTTTAAGAGGTTACAAGCTTTCATCTGAAGATCGGCTGGC
rJMSF005B23+          ATCACCTTTGAACAGAGTTGGTTTAAGAGGTTACAAGCTTTCATCTGAAGATCGGCTGGC
rJMFF022G17+          ATCACCTTTGAACAGAGTTGGTTTAAGAGGTTACAAGCTTTCATCTGAAGATCGGCTGGC
                      ____________________________________________________________
consensus             ATCACCTTTGAACAGAGTTGGTTTAAGAGGTTACAAGCTTTCATCTGAAGATCGGCTGGC
 
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rJMSF031G24+          AGCAGTATTTGTTGTTGGGTTTTCTCTGGGAGATGATGGTGAAAGTGTTGAACAAGTTGT
rJMSF005B23+          AGCAGTATTTGTTGTTGGGTTTTCTCTGGGAGATGATGGTGAAAGTGTTGAACAAGTTGT
rJMFF022G17+          AGCAGTATTTGTTGTTGGGTTTTCTCTGGGAGATGATGGTGAAAGTGTTGAACAAGTTGT
                      ____________________________________________________________
consensus             AGCAGTATTTGTTGTTGGGTTTTCTCTGGGAGATGATGGTGAAAGTGTTGAACAAGTTGT
 
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rJMSF031G24+          TCTTGTGAGCCAGAGTGGAACTGTGAACCGGATAAAAGTTCGGGATATATCTGTTCAATC
rJMSF005B23+          TCTTGTGAGCCAGAGTGGAACTGTGAACCGGATAAAAGTTCGGGATATATCTGTTCAATC
rJMFF022G17+          TCTTGTGAGCCAGAGTGGAACTGTGAACCGGATAAAAGTTCGGGATATATCTGTTCAATC
                      ____________________________________________________________
consensus             TCTTGTGAGCCAGAGTGGAACTGTGAACCGGATAAAAGTTCGGGATATATCTGTTCAATC
 
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rJMSF031G24+          ACGGTTTTCAAGAGGAGTTATTCTGATGCGGCTTGATCAGACTGGAAAAATCCAATCGGC
rJMSF005B23+          ACGGTTTTCAAGAGGAGTTATTCTGATGCGGCTTGATCAGACTGGAAAAATCCAATCGGC
rJMFF022G17+          ACGGTTTTCAAGAGGAGTTATTCTGATGCGGCTTGATCAGACTGGAAAAATCCAATCGGC
                      ____________________________________________________________
consensus             ACGGTTTTCAAGAGGAGTTATTCTGATGCGGCTTGATCAGACTGGAAAAATCCAATCGGC
 
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rJMSF031G24+          TTCATTGATCTCAGCAGCAGAGTCTGAGTCTGATGAACTTGAAGAAGCCACAGTTGCTGC
rJMSF005B23+          TTCATTGATCTCAGCAGCAGAGTCTGAGTCTGATGAACTTGAAGAAGCCACAGTTGCTGC
rJMFF022G17+          TTCATTGATCTCAGCAGCAGAGTCTGAGTCTGATGAACTTGAAGAAGCCACAGTTGCTGC
                      ____________________________________________________________
consensus             TTCATTGATCTCAGCAGCAGAGTCTGAGTCTGATGAACTTGAAGAAGCCACAGTTGCTGC
 
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rJMSF031G24+          TGCTTCTTCATAGGACTTGGGCATTGGGCGGTATCCAATGATGTTGTATCACAGATGATT
rJMSF005B23+          TGCTTCTTCATAGGACTTGGGCATTGGGCGGTATCCAATGATGTTGTATCACAGATGATT
rJMFF022G17+          TGCTTCTTCATAGGACTTGGGCATTGGGCGGTATCCAATGATGTTGTATCACAGATGATT
                      ____________________________________________________________
consensus             TGCTTCTTCATAGGACTTGGGCATTGGGCGGTATCCAATGATGTTGTATCACAGATGATT
 
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rJMSF031G24+          GTACAGCTAATGACTTATGGTATCAATAGAAATAGGTTGGTTATTATGTTATTATTATCA
rJMSF005B23+          GTACAGCTAATGACNTATGGTATCAATAGAAATAGGTTGGTTATTATGTTATTATTATCA
rJMFF022G17+          GTACAGCTAATGACTTATGGTATCAATAGAAATAGGTTGGTTATTATGTTATTATTATCA
                      ____________________________________________________________
consensus             GTACAGCTAATGACTTATGGTATCAATAGAAATAGGTTGGTTATTATGTTATTATTATCA
 
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rJMSF031G24+          TTATTATTGTTATTTTGGAGAAAAGTTTAGTCTCTAGTTATAGTGATTTTGAAGGAACCT
rJMSF005B23+          TTATTATTGNTANTTNGGAAAAAAGTTTAGTCTCTAGTTATAGTGATTTCGAAGGAACC 
rJMFF022G17+          TTATTATTGTTATTTTGGAAAAAAGTTTAGTCTCTAGTTATAGTGATTTTGAAGGAACCT
                      ____________________________________________________________
consensus             TTATTATTGTTATTTTGGAAAAAAGTTTAGTCTCTAGTTATAGTGATTTTGAAGGAACCT
 
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rJMSF031G24+          TTTATTGTAC                                                  
rJMFF022G17+          TTTATTGTACTATTGATTTTTGGAGCAAATACCAATTTTGGTCTCATGAGTATAACAAAA
                      ____________________________________________________________
consensus             TTTATTGTACTATTGATTTTTGGAGCAAATACCAATTTTGGTCTCATGAGTATAACAAAA