Contig 004016:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009E11Sequence551004016 (5)ref|XP_006352186.1|144PREDICTED: uncharacterized protein LOC102590323 [Solanum tuberosum]524004016 (5)ref|XP_006352186.1|144PREDICTED: uncharacterized protein LOC102590323 [Solanum tuberosum]
JMFF022F09Sequence522004016 (5)ref|XP_006352186.1|144PREDICTED: uncharacterized protein LOC102590323 [Solanum tuberosum]514004016 (5)ref|XP_006352186.1|144PREDICTED: uncharacterized protein LOC102590323 [Solanum tuberosum]
JMFN016C11Sequence526004016 (5)ref|XP_006352186.1|145PREDICTED: uncharacterized protein LOC102590323 [Solanum tuberosum]

Alignment

This contig is upended


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JMFN016C11+                                                                      A
JMFF009E11+                                                            TTTTTTTTTTA
                      ____________________________________________________________
consensus                                                              TTTTTTTTTTA
 
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JMFN016C11+           TACTTAACTTTAAAGCATCTATCATCATATATCAATAATATATAATGGAGTACATAAGAA
JMFF009E11+           TACTTAACTTTAAAGCATCTATCATCATATATCAATAATATATAATGGAGTACATAAGAA
JMFF022F09+                             CTATCATCATATATCAATAATATATAATGGAGTACATAAGAA
rJMFF009E11-                            CTATCATCATATATCAATAATATATAATGGAGTACATAAGAA
rJMFF022F09-                                     TATATCAATAATATATAATGGAGTACATAAGAA
                      ____________________________________________________________
consensus             TACTTAACTTTAAAGCATCTATCATCATATATCAATAATATATAATGGAGTACATAAGAA
 
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JMFN016C11+           TTTGTTTTTCTTTTAGTTTTTCAAATCAAAAGCGTATATAAAATATGAGATAGATAACAT
JMFF009E11+           TTTGTTTTTCTTTTAGTTTTTCAAATCAAAAGCGTATATAAAATATGAGATAGATAACAT
JMFF022F09+           TTTGTTTTTCTTTTAGTTTTTCAAATCAAAAGCGTATATAAAATATGAGATAGATAACAT
rJMFF009E11-          TTTGTTTTTCTTTTAGTTTTTCAAATCAAAAGCGTATATAAAATATGAGATAGATAACAT
rJMFF022F09-          TTTGTTTTTCTTTTAGTTTTTCAAATCAAAAGCGTATATAAAATATGAGATAGATAACAT
                      ____________________________________________________________
consensus             TTTGTTTTTCTTTTAGTTTTTCAAATCAAAAGCGTATATAAAATATGAGATAGATAACAT
 
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JMFN016C11+           GATAAATACACGGCAGTACAGTGTAATTAGAGTACTAAATATATATATTTATTATTACGA
JMFF009E11+           GATAAATACACGGCAGTACAGTGTAATTAGAGTACTAAATATATATATTTATTATTACGA
JMFF022F09+           GATAAATACACGGCAGTACAGTGTAATTAGAGTACTAAATATATATATTTATTATTACGA
rJMFF009E11-          GATAAATACACGGCAGTACAGTGTAATTAGAGTACTAAATATATATATTTATTATTACGA
rJMFF022F09-          GATAAATACACGGCAGTACAGTGTAATTAGAGTACTAAATATATATATTTATTATTACGA
                      ____________________________________________________________
consensus             GATAAATACACGGCAGTACAGTGTAATTAGAGTACTAAATATATATATTTATTATTACGA
 
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JMFN016C11+           CGGCCTATTGGGAGGACGAACGGAGATTTGAACTGGAATAGGACGGCCAGTTCCGGTGCC
JMFF009E11+           CGGCCTATTGGGAGGACGAACGGAGATTTGAACTGGAATAGGACGGCCAGTTCCGGTGCC
JMFF022F09+           CGGCCTATTGGGAGGACGAACGGAGATTTGAACTGGAATAGGACGGCCAGTTCCGGTGCC
rJMFF009E11-          CGGCCTATTGGGAGGACGAACGGAGATTTGAACTGGAATAGGACGGCCAGTTCCGGTGCC
rJMFF022F09-          CGGCCTATTGGGAGGACGAACGGAGATTTGAACTGGAATAGGACGGCCAGTTCCGGTGCC
                      ____________________________________________________________
consensus             CGGCCTATTGGGAGGACGAACGGAGATTTGAACTGGAATAGGACGGCCAGTTCCGGTGCC
 
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JMFN016C11+           GCCGCAGCTACTGCACGCCATTCGACCGGAACCGGCACAGGTCCGACAGCCGACATCCCC
JMFF009E11+           GCCGCAGCTACTGCACGCCATTCGACCGGAACCGGCACAGGTCCGACAGCCGACATCCCC
JMFF022F09+           GCCGCAGCTACTGCACGCCATTCGACCGGAACCGGCACAGGTCCGACAGCCGACATCCCC
rJMFF009E11-          GCCGCAGCTACTGCACGCCATTCGACCGGAACCGGCACAGGTCCGACAGCCGACATCCCC
rJMFF022F09-          GCCGCAGCTACTGCACGCCATTCGACCGGAACCGGCACAGGTCCGACAGCCGACATCCCC
                      ____________________________________________________________
consensus             GCCGCAGCTACTGCACGCCATTCGACCGGAACCGGCACAGGTCCGACAGCCGACATCCCC
 
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JMFN016C11+           GTCCGACCAGCGGGAGCAAAGGCAGGAGATCCTGCCGGTGCCGTTGCAGGAGGGACACCG
JMFF009E11+           GTCCGACCAGCGGGAGCAAAGGCAGGAGATCCTGCCGGTGCCGTTGCAGGAGGGACACCG
JMFF022F09+           GTCCGACCAGCGGGAGCAAAGGCAGGAGATCCTGCCGGTGCCGTTGCAGGAGGGACACCG
rJMFF009E11-          GTCCGACCAGCGGGAGCAAAGGCAGGAGATCCTGCCGGTGCCGTTGCAGGAGGGACACCG
rJMFF022F09-          GTCCGACCAGCGGGAGCAAAGGCAGGAGATCCTGCCGGTGCCGTTGCAGGAGGGACACCG
                      ____________________________________________________________
consensus             GTCCGACCAGCGGGAGCAAAGGCAGGAGATCCTGCCGGTGCCGTTGCAGGAGGGACACCG
 
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JMFN016C11+           GGGGAATTTCCCTGACCCCATCATTGCTTTCTGCTCCATCACTGACTTCACCACAACTGC
JMFF009E11+           GGGGAATTTCCCTGACCCCATCATTGCTTTCTGCTCCATCACTGACTTCACCACAACTGC
JMFF022F09+           GGGGAATTTCCCTGACCCCATCATTGCTTTCTGCTCCATCACTGACTTCACCACAACTGC
rJMFF009E11-          GGGGAATTTCCCTGACCCCATCATTGCTTTCTGCTCCATCACTGACTTCACCACAACTGC
rJMFF022F09-          GGGGAATTTCCCTGACCCCATCATTGCTTTCTGCTCCATCACTGACTTCACCACAACTGC
                      ____________________________________________________________
consensus             GGGGAATTTCCCTGACCCCATCATTGCTTTCTGCTCCATCACTGACTTCACCACAACTGC
 
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JMFN016C11+           GCCGGCCAATACGCCCAGACCCGTAGCTAATGGCGTCAGTACGAGCGGACCCATTATTGA
JMFF009E11+           GCCGGCCAATACGCCCAGACCCGTAGCTAATGGCGTCAGTACGAGCGGACCCATTATTGA
JMFF022F09+           GCCGGCCAATACGCCCAGACCCGTAGCTAATGGCGTCAGTACGAGCGGACCCATTATTGA
rJMFF009E11-          GCCGGCCAATACGCCCAGACCCGTAGCTAATGGCGTCAGTACGAGCGGACCCATTATTGA
rJMFF022F09-          GCCGGCCAATACGCCCAGACCCGTAGCTAATGGCGTCAGTACGAGCGGACCCATTATTGA
                      ____________________________________________________________
consensus             GCCGGCCAATACGCCCAGACCCGTAGCTAATGGCGTCAGTACGAGCGGACCCATTATTGA
 
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JMFN016C11+           TCGGATGAGATGATGAGCTCTAAACGATAGATGAAGATGATGAAA               
JMFF009E11+           TCGGATGAGATGATGAGCTCTAAACGATAGATGAAGATGATGAAAGAGAGAAAATTAGTT
JMFF022F09+           TCGGATGAGATGATGAGCTCTAAACGATAGATGAAGATGATGAAAGAGAGAAAATTAGTT
rJMFF009E11-          TCGGATGAGATGATGAGCTCTAAACGATAGATGAAGATGATGAAAGAGAGAAAATTAGTT
rJMFF022F09-          TCGGATGAGATGATGAGCTCTAAACGATAGATGAAGATGATGAAAGAGAGAAAATTAGTT
                      ____________________________________________________________
consensus             TCGGATGAGATGATGAGCTCTAAACGATAGATGAAGATGATGAAAGAGAGAAAATTAGTT