| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021L12 | Sequence | 431 | 000116 (3) | ref|XP_009774026.1| | 7e-37 | PREDICTED: LOW QUALITY PROTEIN: metal transporter Nramp6-like [Nicotiana sylves | 613 | 004013 (3) | emb|CDO98224.1| | 1e-59 | unnamed protein product [Coffea canephora] |
| JMSF020F19 | Sequence | 723 | 000116 (3) | ref|XP_011082369.1| | 9e-95 | PREDICTED: metal transporter Nramp6-like isoform X4 [Sesamum indicum] | 740 | 004013 (3) | ref|XP_011082362.1| | 5e-81 | PREDICTED: metal transporter Nramp1-like isoform X3 [Sesamum indicum] |
| JMSF032C10 | Sequence | 697 | 000116 (3) | ref|XP_009594426.1| | 3e-90 | PREDICTED: LOW QUALITY PROTEIN: metal transporter Nramp6-like [Nicotiana toment | 770 | 004013 (3) | ref|XP_011082362.1| | 3e-77 | PREDICTED: metal transporter Nramp1-like isoform X3 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF032C10+ AGTTCC
____________________________________________________________
consensus AGTTCC
. : . : . : . : . : . :
rJMSF020F19+ ATTGCGTTGCTAGCATCAGGACAGAGTTCTACCATAACGGGGACTTAC
rJMSF032C10+ NAGCTCTTTGCGATTGCGTTGCTAGCATCAGGACAGAGTTCTACCATAACGGGGACTTAC
____________________________________________________________
consensus NAGCTCTTTGCGATTGCGTTGCTAGCATCAGGACAGAGTTCTACCATAACGGGGACTTAC
. : . : . : . : . : . :
rJMSF020F19+ GCTGGGCAATACGTTATGCAGGGTTTTCTTGATTTAAGGTTGAAGCCTTGGATTAGGAAC
rJMSF032C10+ GCTGGGCAATACGTTATGCAGGGTTTTCTTGATTTAAGGTTGAAGCCTTGGATTAGGAAC
____________________________________________________________
consensus GCTGGGCAATACGTTATGCAGGGTTTTCTTGATTTAAGGTTGAAGCCTTGGATTAGGAAC
. : . : . : . : . : . :
rJMSF020F19+ ATGCTTACTCGGGGCTTAGCCATCGTTCCAAGTCTAATTGTTTCAATTATCGGTGGCTCT
rJMSF032C10+ ATGCTTACTCGGGGCTTAGCCATCGTTCCAAGTCTAATTGTTTCAATTATCGGTGGCTCT
rJMFF021L12+ TATCTGTGGCTCT
____________________________________________________________
consensus ATGCTTACTCGGGGCTTAGCCATCGTTCCAAGTCTAATTGTTTCAATTATCGGTGGCTCT
. : . : . : . : . : . :
rJMSF020F19+ GCTGGGGCTGGAAATTTAATCATTATTGCATCGATGATCTTATCATTTGAACTCCCCTTT
rJMSF032C10+ GCTGGGGCTGGAAATTTAATCATTATTGCATCGATGATCTTATCATTTGAACTCCCCTTT
rJMFF021L12+ GCTGGGGCTGGAAATTTAATCATTATTGCATCGATGATCTTATCATTTGAACTCCCCTTT
____________________________________________________________
consensus GCTGGGGCTGGAAATTTAATCATTATTGCATCGATGATCTTATCATTTGAACTCCCCTTT
. : . : . : . : . : . :
rJMSF020F19+ GCTCTCATTCCGTTGCTCAAATTCACGAGCAGCAAAACCAAGATGGGTGTACACGCCAAC
rJMSF032C10+ GCTCTCATTCCGTTGCTCAAATTCACGAGCAGCAAAACCAAGATGGGTGTACACGCCAAC
rJMFF021L12+ GCTCTCATTCCGTTGCTCAAATTCACGAGCAGCAAAACCAAGATGGGTGTACACGCCAAC
____________________________________________________________
consensus GCTCTCATTCCGTTGCTCAAATTCACGAGCAGCAAAACCAAGATGGGTGTACACGCCAAC
. : . : . : . : . : . :
rJMSF020F19+ TCAAAAATAATTTCTGCGATCACTTGGATAATCGGGTCATTGATCATGGGAATCAACATC
rJMSF032C10+ TCAAAAATAATTTCTGCGATCACTTGGATAATCGGGTCATTGATCATGGGAATCAACATC
rJMFF021L12+ TCAAAAATAATTTCTGCGATCACTTGGATAATCGGGTCATTGATCATGGGAATCAACATC
____________________________________________________________
consensus TCAAAAATAATTTCTGCGATCACTTGGATAATCGGGTCATTGATCATGGGAATCAACATC
. : . : . : . : . : . :
rJMSF020F19+ TATTACCTTGCAGAGAAGTTAGTTACTTCCCTCAAGAACAGTGATTTGAAGATGGTGGGC
rJMSF032C10+ TATTACCTTGCAGAGAAGTTAGTTACTTCCCTCAAGAACAGTGATTTGAAGATGGTGGGC
rJMFF021L12+ TATTACCTTGCAGAGAAGTTAGTTACTTCCCTCAAGAACAGTGATTTGAAGATGGTGGGC
____________________________________________________________
consensus TATTACCTTGCAGAGAAGTTAGTTACTTCCCTCAAGAACAGTGATTTGAAGATGGTGGGC
. : . : . : . : . : . :
rJMSF020F19+ AAGGTGTTGTGTGGAATCTTGGGGTTCACGGGATTGTTGGTCTACTTGGGAAGCATCGCA
rJMSF032C10+ AAGGTGTTGTGTGGAATCTTGGGGTTCACGGGATTGTTGGTCTACTTGGGAAGCATCGCA
rJMFF021L12+ AAGGTGTTGTGTGGAATCTTGGGGTTCACGGGATTGTTGGTCTACTTGGGAAGCATCGCA
____________________________________________________________
consensus AAGGTGTTGTGTGGAATCTTGGGGTTCACGGGATTGTTGGTCTACTTGGGAAGCATCGCA
. : . : . : . : . : . :
rJMSF020F19+ TACCTAGTCATCCGAAAAAACAAGGAACGCACCCACCTTCTCGCACTCGCTGCCGTCGAT
rJMSF032C10+ TACCTAGTCATCCGAAAAAACAAGGAACGCACCCACCTTCTCGCACTCGCTGCCGTCGAT
rJMFF021L12+ TACCTAGTCATCCGAAAAAACAAGGAACGCACCCACCTTCTCGCACTCGCTGCCGTCGAT
____________________________________________________________
consensus TACCTAGTCATCCGAAAAAACAAGGAACGCACCCACCTTCTCGCACTCGCTGCCGTCGAT
. : . : . : . : . : . :
rJMSF020F19+ GGGTCACCAAACGGCAACGAGCCAAGTCTACCCCGAGAGGACATTCGGAGCATGCAACTG
rJMSF032C10+ GGGTCACCAAACGGCAACGAGCCAAGTCTACCCCGAGAGGACATTCGGAGCATGCAACTG
rJMFF021L12+ GGGTCACCAAACGGCAACGAGCCAAGTCTACCCCGAGAGGACATTCGGAGCATGCAACTG
____________________________________________________________
consensus GGGTCACCAAACGGCAACGAGCCAAGTCTACCCCGAGAGGACATTCGGAGCATGCAACTG
. : . : . : . : . : . :
rJMSF020F19+ CCGGAGAAGAGGTCTACTTTAGATGTGGAGTGAAGGAGTGATAGTATAGGTCGGAAGATA
rJMSF032C10+ CCGGAGAAGAGGTCTACTTTAGATGTGGAGTGAAGGAGTGATAGTATAGGTCGGAAGATA
rJMFF021L12+ CCGGAGAAGAGGTCTACTTTAGATGTGGAGTGAAGGAGTGATAGTATAGGTCGGAAGATA
____________________________________________________________
consensus CCGGAGAAGAGGTCTACTTTAGATGTGGAGTGAAGGAGTGATAGTATAGGTCGGAAGATA
. : . : . : . : . : . :
rJMSF020F19+ TAAATGACAACCTAACTAGGTGGAAATACAGGTAGCAACATGGATAGTGGTTGGTGTTTT
rJMSF032C10+ TAAATGACAACCTAACTAGGTGGAAATAGAGGTAGCAACATGGATAGTGGTTGGTGTTTT
rJMFF021L12+ TAAATGACAACCTAACTAGGTGGAAATAGAGGTAGCAACATGGATAGTGGTTGGTGTTTT
____________________________________________________________
consensus TAAATGACAACCTAACTAGGTGGAAATAGAGGTAGCAACATGGATAGTGGTTGGTGTTTT
. : . : . : . : . : . :
rJMSF020F19+ CTTTCCATTTTGATGTTAAGGTTTTAGATATC
rJMSF032C10+ CTTTCCATTTTGATGTTAAGGTTTTAGATATC
rJMFF021L12+ CTTTCCATTTTGATGTTAAGGTTTTAGATATCATAAGCTGTACGTGTGTGACGTGCTATT
____________________________________________________________
consensus CTTTCCATTTTGATGTTAAGGTTTTAGATATCATAAGCTGTACGTGTGTGACGTGCTATT