Contig 004005:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020L04Sequence501004005 (9)ref|XP_009628564.1|2e-19PREDICTED: RING-H2 finger protein ATL33 [Nicotiana tomentosiformis]549004005 (9)ref|XP_011094844.1|9e-22PREDICTED: RING-H2 finger protein ATL33 [Sesamum indicum]
JMFF033M07Sequence641004005 (9)ref|XP_011077493.1|4e-26PREDICTED: RING-H2 finger protein ATL33-like [Sesamum indicum]701004005 (9)ref|XP_011077493.1|4e-26PREDICTED: RING-H2 finger protein ATL33-like [Sesamum indicum]
JMFF038G10Sequence593004005 (9)ref|XP_011077493.1|2e-26PREDICTED: RING-H2 finger protein ATL33-like [Sesamum indicum]
JMFN007B10Sequence606004005 (9)ref|XP_011077493.1|3e-26PREDICTED: RING-H2 finger protein ATL33-like [Sesamum indicum]
JMFN012O12Sequence535004005 (9)ref|XP_011077493.1|2e-26PREDICTED: RING-H2 finger protein ATL33-like [Sesamum indicum]
JMFN020M24Sequence615004005 (9)ref|XP_011077493.1|7e-26PREDICTED: RING-H2 finger protein ATL33-like [Sesamum indicum]
JMFN041N24Sequence636004005 (9)ref|XP_011077493.1|4e-26PREDICTED: RING-H2 finger protein ATL33-like [Sesamum indicum]

Alignment

This contig is upended


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JMFN007B10+                                                     TTGAAGGAAACAGAGTTA
JMFN020M24+                                                    TTTGAAGGAAACAGAGTTA
rJMFF033M07-          TTTTTGGATTTCCAACCTTAGAAAAAACTAGGATTTTAGCTTTTGAAGGAAACAGAGTTA
JMFN041N24+                                                             AACAGAGTTA
JMFF033M07+                                                     TTGAAGGAAACAGAGTTA
                      ____________________________________________________________
consensus             TTTTTGGATTTCCAACCTTAGAAAAAACTAGGATTTTAGCTTTTGAAGGAAACAGAGTTA
 
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JMFN007B10+           TGATTGCTTAAAAGTTTTCTAGCAATCATAATCAAAATATGGTGTTTATTTACAAGATCA
JMFN020M24+           TGATGCNTTAAAAGTTTTCTAGCAATCATAATCAAAATATGGTGTTTATTTACAAGATCA
rJMFF033M07-          TGATTGCTTAAAAGTTTTCTAGCAATCATAATCAAAATATGGTGTTTATTTACAAGATCA
JMFN041N24+           TGATTGCTTAAAAGTTTTCTAGCAATCATAATCAAAATATGGTGTTTATTTACAAGATCA
JMFF033M07+           TGATTGCTTAAAAGTTTTNTAGCAATCATAATCAAAATATGGTGTTTATTTACAAGATCA
rJMFF038G10-                                              ATATGGTGTTTATTTACAAGATCA
                      ____________________________________________________________
consensus             TGATTGCTTAAAAGTTTTCTAGCAATCATAATCAAAATATGGTGTTTATTTACAAGATCA
 
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JMFN007B10+           CTCAGCTCGATAGACAACAATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
JMFN020M24+           CTCAGCTCGATAGACAACAATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
rJMFF033M07-          CTCAGCTCGATAGACAACAATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
JMFN041N24+           CTCAGCTCGATAGACAACAATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
JMFN012O12+                             AATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
JMFF033M07+           NTCAGCTCGATAGACAACAATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
rJMFF038G10-          CTCAGCTCGATAGACAACAATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
rJMFF020L04-                                                           TCGGAGATTAC
                      ____________________________________________________________
consensus             CTCAGCTCGATAGACAACAATATAATCAAACTAAACCAGAAGGATCTTGTCGGAGATTAC
 
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JMFN007B10+           AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
JMFN020M24+           AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
rJMFF033M07-          AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
JMFN041N24+           AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
JMFN012O12+           AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
JMFF033M07+           AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
rJMFF038G10-          AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAATGTCCGGCAAACCG
JMFF020L04+                                                CGGCACGAAAGTCCGGCAAACCG
rJMFF020L04-          AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
                      ____________________________________________________________
consensus             AATCGGCGTCAATTACAGGCAGCTTGGAACGCCTAAACGGCACGAAAGTCCGGCAAACCG
 
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JMFN007B10+           GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
JMFN020M24+           GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
rJMFF033M07-          GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
JMFN041N24+           GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
JMFN012O12+           GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
JMFF033M07+           GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
rJMFF038G10-          GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
JMFF020L04+           GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
rJMFF020L04-          GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
                      ____________________________________________________________
consensus             GACAGGTGGAGTGAGAACCGAGCCAGACATCGATACATTTGACATGAAACATATGCTTGC
 
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JMFN007B10+           ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
JMFN020M24+           ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
rJMFF033M07-          ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
JMFN041N24+           ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
JMFN012O12+           ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
JMFF033M07+           ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
rJMFF038G10-          ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
JMFF020L04+           ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
rJMFF020L04-          ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
                      ____________________________________________________________
consensus             ATGCATTTAGCTCTCTAATTTCTTCTCCAGCAACAAACACTGATAAGCACACCGGACATT
 
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JMFN007B10+           CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
JMFN020M24+           CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
rJMFF033M07-          CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
JMFN041N24+           CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
JMFN012O12+           CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
JMFF033M07+           CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
rJMFF038G10-          CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
JMFF020L04+           CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
rJMFF020L04-          CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
                      ____________________________________________________________
consensus             CGCCGGTCACGCCACTCTCGTTCTCTGCCTCTTCTTTCACGTACTTTAAGGTCGAGAAGA
 
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JMFN007B10+           ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCACCCGCCGGGCTCC
JMFN020M24+           ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCGCCCGCCGGGCTCC
rJMFF033M07-          ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCACCCGCCGGGCTCC
JMFN041N24+           ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCACCCGCCGGGCTCC
JMFN012O12+           ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCACCCGCCGGGCTCC
JMFF033M07+           ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCACCCGCCGGGCTCC
rJMFF038G10-          ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGNTCACCCGCCGGGCTCC
JMFF020L04+           ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCA-CCGCCGGGCTCC
rJMFF020L04-          ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCA-CCGCCGGGCTCC
                      ____________________________________________________________
consensus             ACTCCACCAGCGGCTGTTTCTTCACTTTCAATTCTCCAGGCGGTTCACCCGCCGGGCTCC
 
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JMFN007B10+           GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
JMFN020M24+           GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
rJMFF033M07-          GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
JMFN041N24+           GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
JMFN012O12+           GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
JMFF033M07+           GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
rJMFF038G10-          GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
JMFF020L04+           GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
rJMFF020L04-          GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
                      ____________________________________________________________
consensus             GTCCGATCTGCCGGAAAGGGCTCCCACGGCACTTTATGACAAGGCAGACGGTGTAAATCA
 
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JMFN007B10+           GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
JMFN020M24+           GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
rJMFF033M07-          GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
JMFN041N24+           GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
JMFN012O12+           GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
JMFF033M07+           GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
rJMFF038G10-          GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
JMFF020L04+           GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
rJMFF020L04-          GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
                      ____________________________________________________________
consensus             GGAGGGGCAGTAATAAGAGTAGTAATAGGGAGAAGATGGCGGAGAGAGGATTCATGTCGG
 
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JMFN007B10+           A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTC                
JMFN020M24+           AGGTCT                                                      
rJMFF033M07-          AGGGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
JMFN041N24+           A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
JMFN012O12+           A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
JMFF033M07+           A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
rJMFF038G10-          A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
JMFF020L04+           A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
rJMFF020L04-          A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
                      ____________________________________________________________
consensus             A-GGTCTTGGAAGTGATCGGCGCCGGAGACAGCAGTGGTGGGTCTTGATTCATGGACGCC
 
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rJMFF033M07-          CAGGTTATGATAAAGGG                                           
JMFN041N24+           CAGGT                                                       
JMFN012O12+           CAGGTTATGATAAA                                              
JMFF033M07+           CAGGTTATGATAAAGGGATTAATT                                    
rJMFF038G10-          CAGGTTATGATAAAGGGATTAATT                                    
JMFF020L04+           CAGGTTATGATAAAGGGATTAATTATTTTGTTATGGCCTAGATCGATGACGGCAATATAT
rJMFF020L04-          CAGGTTATGATAAAGGGATTAATTATTTTGTTATGGCCTAGATCGATGACGGCAATATAT
                      ____________________________________________________________
consensus             CAGGTTATGATAAAGGGATTAATTATTTTGTTATGGCCTAGATCGATGACGGCAATATAT