Contig 004002:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF019N01-                                                        GAATTCTTCTTCCCC
JMFF031B10-                                                        GAATTCTTCTTCCCC
                      ____________________________________________________________
consensus                                                          GAATTCTTCTTCCCC
 
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JMFF019N01-           CCACCATCTTCTCTCTCCTCCCTATATCTCTCTGCATTTGAAAGCGCCATTTATCCACGA
JMFF031B10-           CCACCATCTTCTCTCTCCTCCCTATATCTCTCTGCATTTGAAAGCGCCATTTATCCACGA
                      ____________________________________________________________
consensus             CCACCATCTTCTCTCTCCTCCCTATATCTCTCTGCATTTGAAAGCGCCATTTATCCACGA
 
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JMFF019N01-           TTCTTTAACAATTATATTCGGAGCCTTTTGTTTTTGTTTTTTGCATCAAAGCTCTATGTT
JMFF031B10-           TTCTTTAACAATTATATTCGGAGCCTTTTGTTTTTGTTTTTTGCATCAAAGCTCTATGTT
                      ____________________________________________________________
consensus             TTCTTTAACAATTATATTCGGAGCCTTTTGTTTTTGTTTTTTGCATCAAAGCTCTATGTT
 
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JMFF019N01-           TAGCTCCCTAAATTGGTTCAATCTTTGATTCTTTTTGCGAGAGAAACCATGAGGAGACGA
JMFF031B10-           TAGCTCCCTAAATTGGTTCAATCTTTGATTCTTTTTGCGAGAGAAACCATGAGGAGACGA
                      ____________________________________________________________
consensus             TAGCTCCCTAAATTGGTTCAATCTTTGATTCTTTTTGCGAGAGAAACCATGAGGAGACGA
 
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JMFF019N01-           GTAGAAGGAAGGGAAGACGGGGAAGAGGCGGAGATTGATCGCCTCCCCATTGACCTGTTG
JMFF031B10-           GTAGAAGGAAGGGAAGACGGGGAAGAGGCGGAGATTGATCGCCTCCCCATTGACCTGTTG
                      ____________________________________________________________
consensus             GTAGAAGGAAGGGAAGACGGGGAAGAGGCGGAGATTGATCGCCTCCCCATTGACCTGTTG
 
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JMFF019N01-           GCTCATATATTAACTCTTCTCACCTGTTTCAAAGATTTGGCTCAGGCGAGCAGTGTGAGC
JMFF031B10-           GCTCATATATTAACTCTTCTCACCTGTTTCAAAGATTTGGCTCAGGCGAGCAGTGTGAGC
rJMFF031B10+                                  TGTTTCAAAGATTTGGCTCAGGCGAGCAGTGTGAGC
rJMFF019N01+                                                        CGAGCAGTGTGAGC
                      ____________________________________________________________
consensus             GCTCATATATTAACTCTTCTCACCTGTTTCAAAGATTTGGCTCAGGCGAGCAGTGTGAGC
 
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JMFF019N01-           CAGAAATGGAGGCAGGGAGCTAAAGAATCGTTGGCGAGGAAAGAAAGACTGAGCTTTTCC
JMFF031B10-           CAGAAATGGAGGCAGGGAGCTAAAGAATCGTTGGCGAGGAAAGAAAGACTGAGCTTTTCC
rJMFF031B10+          CAGAAATGGAGGCAGGGAGCTAAAGAATCGTTGGCGAGGAAAGAAAGACTGAGCTTTTCC
rJMFF019N01+          CAGAAATGGAGGCAGGGAGCTAAAGAATCGTTGGCGAGGAAAGAAAGACTGAGCTTTTCC
                      ____________________________________________________________
consensus             CAGAAATGGAGGCAGGGAGCTAAAGAATCGTTGGCGAGGAAAGAAAGACTGAGCTTTTCC
 
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JMFF019N01-           GGGTGGAAAGTGGATGATGATTCCGCCACTCGCCTTGTTCTCCATGCTTACAGTCTTAAA
JMFF031B10-           GGGTGGAAAGTGGATGATGATTCCGCCACTCGCCTTGTTCTCCATGCTTACAGTCTTAAA
rJMFF031B10+          GGGTGGAAAGTGGATGATGATTCCGCCACTCGCCTTGTTCTCCATGCTTACAGTCTTAAA
rJMFF019N01+          GGGTGGAAAGTGGATGATGATTCCGCCACTCGCCTTGTTCTCCATGCTTACAGTCTTAAA
                      ____________________________________________________________
consensus             GGGTGGAAAGTGGATGATGATTCCGCCACTCGCCTTGTTCTCCATGCTTACAGTCTTAAA
 
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JMFF019N01-           GAGCTTGATATTTCAAGGAGCTGTTGGGGTTGCCAGATAACAGATCATGGGCTGTATCAA
JMFF031B10-           GAGCTTGATATTTCAAGGAGCTGTTGGGGTTGCCAGATAACAGATCATGGGCTGTATCAA
rJMFF031B10+          GAGCTTGATATTTCAAGGAGCTGTTGGGGTTGCCAGATAACAGATCATGGGCTGTATCAA
rJMFF019N01+          GAGCTTGATATTTCAAGGAGCTGTTGGGGTTGCCAGATAACAGATCATGGGCTGTATCAA
                      ____________________________________________________________
consensus             GAGCTTGATATTTCAAGGAGCTGTTGGGGTTGCCAGATAACAGATCATGGGCTGTATCAA
 
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JMFF019N01-           TTGTCTATGGCGAAATGTATTAGCAATC-TTTCGTCGGTGTCTCTGTGGGGATCGACAGG
JMFF031B10-           TTGTCTATGGCGAAATGTATTAGCAATCTTTTCGTCGGTGTCTCTGTGGGGATCGACAGG
rJMFF031B10+          TTGTCTATGGCGAAATGTATTAGCAATC-TTTCGTCGGTGTCTCTGTGGGGATCGACAGG
rJMFF019N01+          TTGTCTATGGCGAAATGTATTAGCAATC-TTTCGTCGGTGTCTCTGTGGGGATCGACAGG
                      ____________________________________________________________
consensus             TTGTCTATGGCGAAATGTATTAGCAATC-TTTCGTCGGTGTCTCTGTGGGGATCGACAGG
 
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JMFF019N01-           GATCACAGACGCA                                               
JMFF031B10-           GATCACAGACGCAGGTGTTGTTCAACTGATCTCGGGAGCTCGCTCTCTACAACATCTGAA
rJMFF031B10+          GATCACAGACGCAGGTGTTGTTCAACTGATCTCGGGAGCTCGCTCTCTACAACATCTGAA
rJMFF019N01+          GATCACAGACGCAGGTGTTGTTCAACTGATCTCGGGAGCTCGCTCTCTACAACATCTGAA
                      ____________________________________________________________
consensus             GATCACAGACGCAGGTGTTGTTCAACTGATCTCGGGAGCTCGCTCTCTACAACATCTGAA
 
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JMFF031B10-           TATTGGCGCTACATTTA                                           
rJMFF031B10+          TATTGGCGCTACATTTATAACAGACACATCCTTGTTCGCCATTGCAGACAGCTGCCCGCA
rJMFF019N01+          TATTGGCGCTACATTTATAACAGACACATCCTTGTTCGCCATTGCAGACAGCTGCCCGCA
                      ____________________________________________________________
consensus             TATTGGCGCTACATTTATAACAGACACATCCTTGTTCGCCATTGCAGACAGCTGCCCGCA
 
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rJMFF031B10+          CTTAAAGAATATTGGTCTATGGGGTTGTCGCCATGTAACTGAGAGCGGACTCATAGCTCT
rJMFF019N01+          CTTAAAGAATATTGGTCTATGGGGTTGTCGCCATGTAACTGAGAGCGGACTCATAGCTCT
                      ____________________________________________________________
consensus             CTTAAAGAATATTGGTCTATGGGGTTGTCGCCATGTAACTGAGAGCGGACTCATAGCTCT
 
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rJMFF031B10+          TGTAAATAAATGTCGCAAGCTTGAATCGATTAATGTTCGGGGGATGAGGGTACCTGTGGA
rJMFF019N01+          TGTAAATAAATGTCGCAAGCTTGAATCGATTAATGTTCGGGGGATGAGGGTACCTGTGGA
                      ____________________________________________________________
consensus             TGTAAATAAATGTCGCAAGCTTGAATCGATTAATGTTCGGGGGATGAGGGTACCTGTGGA
 
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rJMFF031B10+          TTGCTTCATTGGTTTGCTTACCATAAGCCCAGCTCTTCAGATAGAACCCAAAGGGTTGCT
rJMFF019N01+          TTGCTTCATTGGTTTGCTTACCATAAGCCCAGCTCTTCAGATAGAACCCAAAGGGTTGCT
                      ____________________________________________________________
consensus             TTGCTTCATTGGTTTGCTTACCATAAGCCCAGCTCTTCAGATAGAACCCAAAGGGTTGCT
 
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rJMFF031B10+          GCCAAGCATTGACAGGGTCTCAATGTGGCCTGTCTTTTAAGCTGCCTATCAGCAGTGATC
rJMFF019N01+          GCCAAGCATTGACAGGGTCTCAATGTGGCCTGTCTTTTAAGCTGCCTATCAGCAGTGATC
                      ____________________________________________________________
consensus             GCCAAGCATTGACAGGGTCTCAATGTGGCCTGTCTTTTAAGCTGCCTATCAGCAGTGATC
 
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rJMFF031B10+          ACAGCTTTTACCCATTCTGTGTAAATAAGATTGATTGATGCTTCAAGTATGATATTTTCA
rJMFF019N01+          ACAGCTTTTACCCATTCTGTGTAAATAAGATTGATTGATGCTTCAAGTATGATATTTTCA
                      ____________________________________________________________
consensus             ACAGCTTTTACCCATTCTGTGTAAATAAGATTGATTGATGCTTCAAGTATGATATTTTCA
 
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rJMFF031B10+          ATTAATTTGTACAGATTGTTTCTCCATTTCTTTGTTCTATTGGTATCCCCCAATTCCAAT
rJMFF019N01+          ATTAATTTGTACAGATTGTTTCTCCATTTCTTTGTTCTATTGGTATCCCCCAATTCCAAT
                      ____________________________________________________________
consensus             ATTAATTTGTACAGATTGTTTCTCCATTTCTTTGTTCTATTGGTATCCCCCAATTCCAAT