Contig 003999:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019F23Sequence565003999 (4)ref|XP_009782684.1|5e-65PREDICTED: DCN1-like protein 4 [Nicotiana sylvestris]759003999 (4)ref|XP_009589589.1|2e-93PREDICTED: DCN1-like protein 4 [Nicotiana tomentosiformis] ref|XP_009589590.1| P
JMSF042N01Sequence749003999 (4)ref|XP_009589589.1|6e-110PREDICTED: DCN1-like protein 4 [Nicotiana tomentosiformis] ref|XP_009589590.1| P677003999 (4)ref|XP_009589589.1|6e-95PREDICTED: DCN1-like protein 4 [Nicotiana tomentosiformis] ref|XP_009589590.1| P

Alignment

This contig is upended


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JMFF019F23-                         ATACTGTTCTATTTCTGCCATAATTCAAAACCCTCCCCAGAAACCC
                      ____________________________________________________________
consensus                           ATACTGTTCTATTTCTGCCATAATTCAAAACCCTCCCCAGAAACCC
 
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JMFF019F23-           AATTAACAAGAATTCGAAACACAATGCCTCCTCGCGCTTCCAAGAGAAAAGCTAATCCCA
JMSF042N01-                                                    AAGAGAAAAGCTAATCCCA
                      ____________________________________________________________
consensus             AATTAACAAGAATTCGAAACACAATGCCTCCTCGCGCTTCCAAGAGAAAAGCTAATCCCA
 
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JMFF019F23-           CCAAATCTGCCCCTGCCAAATCTCCAAAAGTTGATTCTGTTCGCTCCGCCTCAAGCAAAG
JMSF042N01-           CCAAATCTGCCCCTGCCAAATCTCCAAAAGTTGATTCTGTTCGCTCCGCCTCAAGCAAAG
                      ____________________________________________________________
consensus             CCAAATCTGCCCCTGCCAAATCTCCAAAAGTTGATTCTGTTCGCTCCGCCTCAAGCAAAG
 
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JMFF019F23-           GGAAAGCTGCATCAAAAGTGACGGAGTCCATAGATAACCTTTTCAATACATATGCTA-AC
JMSF042N01-           GGAAAGCTGCATCAAAAGTGACGGAGTCCATAGATAACCTTTTCAATACATATGCTA-AC
rJMFF019F23+                               CGGAGTCCATAGATACCCTTTTCAATACATATGCTANCC
                      ____________________________________________________________
consensus             GGAAAGCTGCATCAAAAGTGACGGAGTCCATAGATAACCTTTTCAATACATATGCTA-AC
 
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JMFF019F23-           AAATCGTTGGGTTCAATTGATCCAGATGGA-GTTGAGGCATTGTGCTCGGATCTAGGCGT
JMSF042N01-           AAATCGTTGGGTTCAATTGATCCAGATGGA-GTTGAGGCATTGTGCTCGGATCTAGGCGT
rJMSF042N01+                                         GTTGAGGCATTGTGCTCGGATCTAGGCGT
rJMFF019F23+          AAATCGTTGGGTTCAATTGATCCAGATGGAGGTTGAGGCATTGTGCTCGGATCTAGGCGT
                      ____________________________________________________________
consensus             AAATCGTTGGGTTCAATTGATCCAGATGGA-GTTGAGGCATTGTGCTCGGATCTAGGCGT
 
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JMFF019F23-           AGATCATACTGATGTCAGGGTGTTGATGCTTGCTTGGAAAATGAAAGCGAAAAGACAGGG
JMSF042N01-           AGATCATACTGATGTCAGGGTGTTGATGCTTGCTTGGAAAATGAAAGCGAAAAGACAGGG
rJMSF042N01+          AGATCATACTGATGTCAGGGTGTTGATGCTTGCTTGGAAAATGAAAGCGAAAAGACAGGG
rJMFF019F23+          AGATCATACTGATGTCAGGGTGTTGATGCTTGCTTGGAAAATGAAAGCGAAAAGACAGGG
                      ____________________________________________________________
consensus             AGATCATACTGATGTCAGGGTGTTGATGCTTGCTTGGAAAATGAAAGCGAAAAGACAGGG
 
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JMFF019F23-           ATATTTCTCTCAGGATGAGTGGCAATTAGGGTTGAAAGCTCTTCAGGCTGATACCATTAC
JMSF042N01-           ATATTTCTCTCAGGATGAGTGGCAATTAGGGTTGAAAGCTCTTCAGGCTGATACCATTAC
rJMSF042N01+          ATATTTCTCTCAGGATGAGTGGCAATTAGGGTTGAAAGCTCTTCAGGCTGATACCATTAC
rJMFF019F23+          ATATTTCTCTCAGGATGAGTGGCAATTAGGGTTGAAAGCTCTTCAGGCTGATACCATTAC
                      ____________________________________________________________
consensus             ATATTTCTCTCAGGATGAGTGGCAATTAGGGTTGAAAGCTCTTCAGGCTGATACCATTAC
 
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JMFF019F23-           TAAATTGAAGAAAGCCCTCCCAAAATTGGAGGCAGAGGTCATGATGCCTGTGAATTTTGA
JMSF042N01-           TAAATTGAAGAAAGCCCTCCCAAAATTGGAGGCAGAGGTCATGATGCCTGTGAATTTTGA
rJMSF042N01+          TAAATTGAAGAAAGCCCTCCCAAAATTGGAGGCAGAGGTCATGATGCCTGTGAATTTTGA
rJMFF019F23+          TAAATTGAAGAAAGCCCTCCCAAAATTGGAGGCAGAGGTCATGATGCCTGTGAATTTTGA
                      ____________________________________________________________
consensus             TAAATTGAAGAAAGCCCTCCCAAAATTGGAGGCAGAGGTCATGATGCCTGTGAATTTTGA
 
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JMFF019F23-           GGATTTTTATGCTTTTGCATTTCGCTACTGCCTAACAGAGGATAAACAAAAATGCTTAGA
JMSF042N01-           GGATTTTTATGCTTTTGCATTTCGCTACTGCCTAACAGAGGATAAACAAAAATGCTTAGA
rJMSF042N01+          GGATTTTTATGCTTTTGCATTTCGCTACTGCCTAACAGAGGATAAACAAAAATGCTTAGA
rJMFF019F23+          GGATTTTTATGCTTTTGCATTTCGCTACTGCCTAACAGAGGATAAACAAAAATGCTTAGA
                      ____________________________________________________________
consensus             GGATTTTTATGCTTTTGCATTTCGCTACTGCCTAACAGAGGATAAACAAAAATGCTTAGA
 
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JMFF019F23-           CATTGATAGCATCTGTATACTGGTGGATCTTGTTCTGGGGT                   
JMSF042N01-           CATTGATAGCATCTGTATACTGGTGGATCTTGTTCTGGGGTCACAGTTCCGAGCTCAGGT
rJMSF042N01+          CATTGATAGCATCTGTATACTGGTGGATCTTGTTCTGGGGTCACAGTTCCGAGCTCAGGT
rJMFF019F23+          CATTGATAGCATCTGTATACTGGTGGATCTTGTTCTGGGGTCACAGTTCCGAGCTCAGGT
                      ____________________________________________________________
consensus             CATTGATAGCATCTGTATACTGGTGGATCTTGTTCTGGGGTCACAGTTCCGAGCTCAGGT
 
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JMSF042N01-           TGACTCATTCGTAGAATATCTTAAGAGTCAAAGTGATTATAAAGTACTCAATATGGATCA
rJMSF042N01+          TGACTCATTCGTAGAATATCTTAAGAGTCAAAGTGATTATAAAGTACTCAATATGGATCA
rJMFF019F23+          TGACTCATTCGTAGAATATCTTAAGAGTCAAAGTGATTATAAAGTACTCAATATGGATCA
                      ____________________________________________________________
consensus             TGACTCATTCGTAGAATATCTTAAGAGTCAAAGTGATTATAAAGTACTCAATATGGATCA
 
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JMSF042N01-           GTGGACAAACTTTCTTCGATTTTGCCAAGAGATAAGCTTCCCAGACCTCCAAGATTACGA
rJMSF042N01+          GTGGACAAACTTTCTTCGATTTTGCCAAGAGATAAGCTTCCCAGACCTCCAAGATTACGA
rJMFF019F23+          GTGGACAAACTTTCTTCGATTTTGCCAAGAGATAAGCTTCCCAGACCTCCAAGATTACGA
                      ____________________________________________________________
consensus             GTGGACAAACTTTCTTCGATTTTGCCAAGAGATAAGCTTCCCAGACCTCCAAGATTACGA
 
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JMSF042N01-           TACAAACCAAGCATGGCCCGTAATTCTTGACAATTTTGTAGACTGGATGAAAGAAAAGCG
rJMSF042N01+          TACAAACCAAGCATGGCCCGTAATTCTTGACAATTTTGTAGACTGGATGAAAGAAAAGCG
rJMFF019F23+          TACAAACCAAGCATGGCCCGTAATTCTTGACAATTTTGTAGACTGGATGAAAGAAAAGCG
                      ____________________________________________________________
consensus             TACAAACCAAGCATGGCCCGTAATTCTTGACAATTTTGTAGACTGGATGAAAGAAAAGCG
 
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JMSF042N01-           AAGCTAACTGCCAGCTTGAAACCATCCCTCCTTAATGCTAATTTCACAAGGGCTTCTCCG
rJMSF042N01+          AAGCTAACTGCCAGCTTGAAACCATCCCTCCTTAATGCTAATTTCACAAGGGCTTCTCCG
rJMFF019F23+          AAGCTAACTGCCAGCTTGAAACCATCCCTCCTTAATGCTAATTTCACAAGGGCTTCTCCG
                      ____________________________________________________________
consensus             AAGCTAACTGCCAGCTTGAAACCATCCCTCCTTAATGCTAATTTCACAAGGGCTTCTCCG
 
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JMSF042N01-           AACTCCATGAC                                                 
rJMSF042N01+          AACTCCATGACGGAGCCAAAGTACTCGTGAATCATTGCGCTACTGAGAATATGAAGCTGG
rJMFF019F23+          AACTCCATGACGGAGCCAAAGTACTCGTGAATCATTGCGCTACTGAGAATATGAAGCTGG
                      ____________________________________________________________
consensus             AACTCCATGACGGAGCCAAAGTACTCGTGAATCATTGCGCTACTGAGAATATGAAGCTGG
 
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rJMSF042N01+          TCTGCCAGGATACAAAATTCAATCTCAGATTTTACTTACAT                   
rJMFF019F23+          TCTGCCAGGATACAAAATTCAATCTCAGATTTTACTTACATTCCTGCTAAATTACTCATA
                      ____________________________________________________________
consensus             TCTGCCAGGATACAAAATTCAATCTCAGATTTTACTTACATTCCTGCTAAATTACTCATA