Contig 003997:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005B22Sequence491000881 (14)gb|KDO54954.1|4e-93hypothetical protein CISIN_1g0202292mg, partial [Citrus sinensis]760003997 (8)gb|AAF26735.1|2e-126methionine synthase [Coffea arabica]
JMFF019D20Sequence594000881 (14)gb|KDO54954.1|1e-114hypothetical protein CISIN_1g0202292mg, partial [Citrus sinensis]730003997 (8)gb|AAF26735.1|7e-124methionine synthase [Coffea arabica]
JMFF021F13Sequence390006079 (2)tpg|DAA47597.1|3e-43TPA: putative methionine synthase family protein [Zea mays]445003997 (8)tpg|DAA50625.1|3e-65TPA: putative methionine synthase family protein [Zea mays]
JMFF032I11Sequence532000881 (14)gb|KDO54954.1|4e-102hypothetical protein CISIN_1g0202292mg, partial [Citrus sinensis]735003997 (8)gb|AAF26735.1|2e-137methionine synthase [Coffea arabica]
JMFF045H06Sequence669006079 (2)gb|KDO54954.1|4e-97hypothetical protein CISIN_1g0202292mg, partial [Citrus sinensis]282003997 (8)gb|ABR25991.1|1e-04methyltetrahydropteroyltriglutamate#homocysteine methyltransferase [Oryza sativ
JMSF008C13Sequence359000881 (14)gb|KDO54954.1|5e-58hypothetical protein CISIN_1g0202292mg, partial [Citrus sinensis]738003997 (8)gb|AAF26735.1|4e-128methionine synthase [Coffea arabica]
JMSF033F13Sequence636000881 (14)gb|KDO54954.1|1e-123hypothetical protein CISIN_1g0202292mg, partial [Citrus sinensis]741003997 (8)gb|AAF26735.1|2e-127methionine synthase [Coffea arabica]
JMSF037G01Sequence697000881 (14)gb|KDO54954.1|3e-137hypothetical protein CISIN_1g0202292mg, partial [Citrus sinensis]603003997 (8)gb|AAF26735.1|1e-92methionine synthase [Coffea arabica]

Alignment

This contig is upended


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rJMFF005B22+                                                       CCAGATTGCTTTGGC
rJMFF032I11+                    GTTAGAAATGACCAACCAAGATTTGAAACCTGCTACCAGATTGCTTTGGC
rJMSF008C13+                                                       CCAGANTGCTTTGGC
rJMSF033F13+                                                  TGCTACCAGATTGCTTNGGC
rJMFF019D20+                                                            TTGCTTTGGC
                      ____________________________________________________________
consensus                       GTTAGAAATGACCAACCAAGATTTGAAACCTGCTACCAGATTGCTTTGGC
 
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rJMFF005B22+          AATTAAGGATGAAGTAGAGGATTTGGAGAAGGCAAACATCAATGTCATTCAAATTGATGA
rJMFF032I11+          AATTAAGGATGAAGTAGAGGATTTGGAGAAGGCAAACATCAATGTCATTCAAATTGATGA
rJMSF008C13+          AATTAAGGATGAAGTAGAGGATTTGGAGAAGGCAAACATCAATGTCATTCAAATTGATGA
rJMSF033F13+          AATTAAGGATGAAGTAGAGGATTTGGAGAAGGCAAACATCAATGTCATTCAAATTGATGA
rJMFF019D20+          AATTAAGGATGAAGTAGAGGATTTGGAGAAGGCAAACATCAATGTCATTCAAATTGATGA
                      ____________________________________________________________
consensus             AATTAAGGATGAAGTAGAGGATTTGGAGAAGGCAAACATCAATGTCATTCAAATTGATGA
 
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rJMFF005B22+          AGCTGCTTTGAGAGAGGGTTTGCCTCTTAGGAAGGCGGAACATGCTTTCTATTTGAACTG
rJMFF032I11+          AGCTGCTTTGAGAGAGGGTTTGCCTCTTAGGAAGGCGGAACATGCTTTCTATTTGAACTG
rJMSF008C13+          AGCTGCTTTGAGAGAGGGTTTGCCTCTTAGGAAGGCGGAACATGCTTTCTATTTGAACTG
rJMSF033F13+          AGCTGCTTTGAGAGAGGGTTTGCCTCTTAGGAAGGCGGAACATGCTTTCTATTTGAACTG
rJMSF037G01+                                                                 AACTG
rJMFF019D20+          AGCTGCTTTGAGAGAGGGTTTGCNTCTTAGGAAGGCGGAACATGCTTTCTATTTGAACTG
                      ____________________________________________________________
consensus             AGCTGCTTTGAGAGAGGGTTTGCCTCTTAGGAAGGCGGAACATGCTTTCTATTTGAACTG
 
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rJMFF005B22+          GGCTGTCCACTCATTCAGAATCACCAACTGCGGTGTCCAAAACACAACCCAGATCCATAC
rJMFF032I11+          GGCTGTCCACTCATTCAGAATCACCAACTGCGGTGTCCAAAACACAACCCAGATCCATAC
rJMSF008C13+          GGCTGTCCACTCATTCAGAATCACCAACTGCGGTGTCCAAAACACAACCCAGATCCATAC
rJMSF033F13+          GGCTGTCCACTCATTCAGAATCACCAACTGCGGTGTCCAAAACACAACCCAGATCCATAC
rJMSF037G01+          GGCTGTCCACTCATTCAGAATCACCAACTGCGGTGTNCAAAACACAANCCAGATCCATAC
rJMFF019D20+          GGCTGTCCACTCATTCAGAATCACCAACTGCGGTGTCCAAAACACAACCCAGATCCATAC
                      ____________________________________________________________
consensus             GGCTGTCCACTCATTCAGAATCACCAACTGCGGTGTCCAAAACACAACCCAGATCCATAC
 
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rJMFF005B22+          TCACATGTGCTATTCAAACTTCAACGACATCATCCACTCCATCATTGACATGGATGCTGA
rJMFF032I11+          TCACATGTGCTATTCAAACTTCAACGACATCATCCACTCCATCATTGACATGGATGCTGA
rJMSF008C13+          TCACATGTGCTATTCAAACTTCAACGACATCATCCACTCCATCATTGACATGGATGCTGA
rJMSF033F13+          TCACATGTGCTATTCAAACTTCAACAACATCATCCACTCCATCATTGACATGGATGCTGA
rJMSF037G01+          TCACATGTGCTATTCAAACTTCAANGACATCATCCACTCCATCATTGACATGGATGCTGA
rJMFF021F13+                                             ACTCCATCATTGACATGGATGCTGA
rJMFF019D20+          TCACATGTGCTATTCAAACTTCAACGACATCATCCACTCCATCATTGACATGGATGCTGA
                      ____________________________________________________________
consensus             TCACATGTGCTATTCAAACTTCAACGACATCATCCACTCCATCATTGACATGGATGCTGA
 
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rJMFF005B22+          TGTTATCACAATTGAGAACTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
rJMFF032I11+          TGTTATCACAATTGAGAACTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
rJMSF008C13+          TGTTATCACAATTGAGAACTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
rJMSF033F13+          TGTTATCACAATTGAGAACTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
rJMSF037G01+          TGTTATCACAATTGAGAACTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
rJMFF021F13+          NGTTATCNCAATTGAGANCTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
rJMFF019D20+          TGTTATCACAATTGAGAACTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
                      ____________________________________________________________
consensus             TGTTATCACAATTGAGAACTCCCGTTCTGATGAGAAGCTCCTCTCAGTTTTCCGTGAAGG
 
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rJMFF005B22+          AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
rJMFF032I11+          AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
rJMSF008C13+          AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
rJMSF033F13+          AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
rJMSF037G01+          AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
rJMFF021F13+          AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
rJMFF019D20+          AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
                      ____________________________________________________________
consensus             AGTGAAGTATGGTGCTGGAATCGGACCGGGTGTGTACGACATCCACTCCCCCAGAATACC
 
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rJMFF005B22+          GTCCACCGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGACACAAACAT
rJMFF032I11+          GTCCACCGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGACACAAACAT
rJMSF008C13+          GTCCACCGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGACACAAACAT
rJMSF033F13+          GTCCACCGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGACACAAACAT
rJMSF037G01+          GTCCACNGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGATACAAACAT
rJMFF021F13+          GTCCACCGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGACACAAACAT
rJMFF019D20+          GTCCACCGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGACACAAACAT
                      ____________________________________________________________
consensus             GTCCACCGAAGAGATTGCAGACAGAGTTAACAAGATGCTTGCAGTCCTTGACACAAACAT
 
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rJMFF005B22+          CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
rJMFF032I11+          CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
rJMSF008C13+          CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
rJMSF033F13+          CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
rJMSF037G01+          CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
rJMFF021F13+          CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
rJMFF045H06+                                                   ACACAGAAGTGAAGCCAGC
rJMFF019D20+          CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
                      ____________________________________________________________
consensus             CTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACAGAAGTGAAGCCAGC
 
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rJMFF005B22+          TCTTGAGAACATGGTTTCTGCTGCCAAG                                
rJMFF032I11+          TCTTGAGAACATGGTTTCTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
rJMSF008C13+          TCTTGAGAACATGGTTTCTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
rJMSF033F13+          TCTTGAGAACATGGTTTCTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
rJMSF037G01+          TCTTGAGAACATGGTTTCTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
rJMFF021F13+          TCTTGAGAACATGGTTTCTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
rJMFF045H06+          TCTTGAGAACATGGTTTTTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
rJMFF019D20+          TCTTGAGAACATGGTTTCTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
                      ____________________________________________________________
consensus             TCTTGAGAACATGGTTTCTGCTGCCAAGCTCATCCGGACCCAGCTTGCCAGTGCCAAATG
 
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rJMFF032I11+          AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
rJMSF008C13+          AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
rJMSF033F13+          AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
rJMSF037G01+          AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
rJMFF021F13+          AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
rJMFF045H06+          AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
rJMFF019D20+          AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
                      ____________________________________________________________
consensus             AGCCTTTGAATTTCACCACCCAATTTATTCCTAAATACCAGTGTTTGTGAGGAAATGGCA
 
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rJMFF032I11+          CTCTGTAGCTCTAGTGTGCTCCCTGAGCATTTATTATTCTTTTCCACTTTTCTTTGTTTC
rJMSF008C13+          CTCTGTAGCTCTAGTGTGCTCCCTGAGCATTTATTATTCTTTTCCACTTTTCTTTGTTTC
rJMSF033F13+          CTCTGTAGCTCTAGTGTGCTCCCTGAGCATTTATTATTCTTTTCCACTTTTCTTTGTTTC
rJMSF037G01+          CTCTGTAGCTCTAGTGTGCTCCCTGAGCATTTANTATTCTTTTCCACTANTCTTTGTTTC
rJMFF021F13+          CTCTGTAGCTCTAGTGTGCTCCCTGAGCATTTATTATTCTTTTCCACTTTTCTTTGTTTC
rJMFF045H06+          CTCTGTAGCTTTAGTGTGCTCCCTGAGCATTTATTATTCTTTTCCACTTTTCTTTGTTTC
rJMFF019D20+          CTCTGTAGCTCTAGTGTGCTCCCTGAGCATTTATTATTCTTTTCCACTTTTCTTTGTTTC
                      ____________________________________________________________
consensus             CTCTGTAGCTCTAGTGTGCTCCCTGAGCATTTATTATTCTTTTCCACTTTTCTTTGTTTC
 
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rJMFF032I11+          GTCTTTTACTTTTACCTTTGCATTT                                   
rJMSF008C13+          GTCTTTTACTTTTACCTTTGCATTTTGAAAGGAATCTGATATCCTGAACTTCTCAGAG  
rJMSF033F13+          GTCTTTTACTTTTACCTTTGCATTTTGAAAGGAATCTGATATCCTGAACTTCTCAGAG  
rJMSF037G01+          GTCTTTTACTTTCACCTTTGCATTTTGAAAGGAATCTGATATCCTGAACTTCTCAGAG  
rJMFF045H06+          GTCTTTTACTTTTACCTTTGCATTTTGAAAGGAATTTGATATCCTG              
rJMFF019D20+          GTCTTTTACTTTTACCTTTGCATTTTGAAAGGAATCTGATATCCTGAACTTCTCAGAGNG
                      ____________________________________________________________
consensus             GTCTTTTACTTTTACCTTTGCATTTTGAAAGGAATCTGATATCCTGAACTTCTCAGAGNG