Contig 003990:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017J07Sequence556005034 (2)ref|XP_006357221.1|7e-82PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]763003990 (2)ref|XP_009602226.1|7e-33PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Nicotiana tomentosi
JMSF016L06Sequence570005034 (2)ref|XP_006357221.1|7e-56PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]755003990 (2)ref|XP_009602226.1|2e-42PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF016L06+              AAACAGAAACTTGCAGTTTGAGCGTACGTGATGCAAATGCCGTGAAAGATGCCATT
rJMFF017J07+                           CAGTTTGAGCGTACGTGATGCAAATGCCGTGAAAGATGCCATT
                      ____________________________________________________________
consensus                 AAACAGAAACTTGCAGTTTGAGCGTACGTGATGCAAATGCCGTGAAAGATGCCATT
 
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rJMSF016L06+          GAAAGTAAGGAAGAGTACGAGGATATGTTTTTGATATATAAACAGCTTCGACAGATTGAG
rJMFF017J07+          GAAAGTAAGGAAGAGTACGAGGATATGTTTNTGATATATAAACAGCTTCGACAGATTGAG
                      ____________________________________________________________
consensus             GAAAGTAAGGAAGAGTACGAGGATATGTTTTTGATATATAAACAGCTTCGACAGATTGAG
 
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rJMSF016L06+          AGTCAACAGTCCAG-CTTAATGGACCTTCTTGAGAGATTCATCGGAAGTTCCCAGAATGG
rJMFF017J07+          AGTCAACAGTCCAGCCTTAATGGACCTTCTTGAGAGATTCATCGGAAGTTCCCAGAATGG
                      ____________________________________________________________
consensus             AGTCAACAGTCCAGCCTTAATGGACCTTCTTGAGAGATTCATCGGAAGTTCCCAGAATGG
 
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rJMSF016L06+          GATGAACTCGTTAGAGGAACGCGTGAATGGACTGGAGAGGGTATTGGATGAAATGCAGCA
rJMFF017J07+          GATGAACTCGTTAGAGGAACGCGTGAATGGACTGGAGAGGGTATTGGATGAAATGCAGCA
                      ____________________________________________________________
consensus             GATGAACTCGTTAGAGGAACGCGTGAATGGACTGGAGAGGGTATTGGATGAAATGCAGCA
 
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rJMSF016L06+          GTGTTTGGGGTTCTCCGGCAGAAGGATTCCGACCACTGATTATACGGGAAGTACATGTTT
rJMFF017J07+          GTGTTTGGGGTTCTCCGGCAGAAGGATTCCGACCACTGATTATACGGGAAGTACATGTTT
                      ____________________________________________________________
consensus             GTGTTTGGGGTTCTCCGGCAGAAGGATTCCGACCACTGATTATACGGGAAGTACATGTTT
 
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rJMSF016L06+          TATGCTACCTCGGGCAGAGTTTTTGAGTCCTAAGTTCTGGAGAAAACAAGAAGGACAAAG
rJMFF017J07+          TATGCTACCTCGGGCAGAGTTTTTGAGTCCTAAGTTCTGGAGAAAACAAGAAGGACAAAG
                      ____________________________________________________________
consensus             TATGCTACCTCGGGCAGAGTTTTTGAGTCCTAAGTTCTGGAGAAAACAAGAAGGACAAAG
 
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rJMSF016L06+          CTACAACACGAGTTTTTCGCTCTCGAGTAGAAGTCAGCCAGAGAACACCATGCACATGAT
rJMFF017J07+          CTACAACACGAGTTTTTCGCTCTCGAGTAGAAGTCAGCCAGAGAACACCATGCACATGAT
                      ____________________________________________________________
consensus             CTACAACACGAGTTTTTCGCTCTCGAGTAGAAGTCAGCCAGAGAACACCATGCACATGAT
 
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rJMSF016L06+          GCCAGGTGAAGATGACATTGCACAAACACTAATCGAAAATAGTTCCAGAAATCGCCATCC
rJMFF017J07+          GCCAGGTGAAGATGNCATTGCACAAACANTAATCGAAAATAGTTCCAGAAATCGCCATCC
                      ____________________________________________________________
consensus             GCCAGGTGAAGATGACATTGCACAAACACTAATCGAAAATAGTTCCAGAAATCGCCATCC
 
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rJMSF016L06+          GAGTATGCATGGCACCGGGGAAACATTAGAGTCATCTTCAACGAGGAAATGGGAGAGCGC
rJMFF017J07+          GAGTATGCATGGCACCGGGGAAACATTAGAGTCATCTTCAACGAGGAAATGGGAGAGCGC
                      ____________________________________________________________
consensus             GAGTATGCATGGCACCGGGGAAACATTAGAGTCATCTTCAACGAGGAAATGGGAGAGCGC
 
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rJMSF016L06+          CCGAGGTTGCCTTGCTGGTAGGCTAAACGGGGCGGCACTTGCAAATTGCATAAAACAGGA
rJMFF017J07+          CCGAGGTTGCCTTGCTGGTAGGCTAAACGGGGCGGCACTTGCAAATTGCATAAAACAGGA
                      ____________________________________________________________
consensus             CCGAGGTTGCCTTGCTGGTAGGCTAAACGGGGCGGCACTTGCAAATTGCATAAAACAGGA
 
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rJMSF016L06+          GACCTGAGCATGGGGGTTAAAATTATGGTCAGCCTTATCTATATATGTTGTTGTACATGT
rJMFF017J07+          GACCTGAGCATGGGGGTTAAAATTATGGTCAGCCTTATCTATATATGTTGTTGTACATGT
                      ____________________________________________________________
consensus             GACCTGAGCATGGGGGTTAAAATTATGGTCAGCCTTATCTATATATGTTGTTGTACATGT
 
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rJMSF016L06+          TCCTACGTTTCATCACGAATCGATGCATAGTTAGTTTACTGCAGAATACTCCCATTTCTT
rJMFF017J07+          TCCTACGTTTCATCACGAATCGATGCATAGTTAGTTTACTGCAGAATACTCCCATTTCTT
                      ____________________________________________________________
consensus             TCCTACGTTTCATCACGAATCGATGCATAGTTAGTTTACTGCAGAATACTCCCATTTCTT
 
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rJMSF016L06+          TCTTTCATGTTTATTACTTGATCCAGTAGCCTTCTTCTTT                    
rJMFF017J07+          TCTTTCATGTTTATTACTTGATCCAGTAGCCTTCTTCTTTTAAGTCTAATGCAGAAAACG
                      ____________________________________________________________
consensus             TCTTTCATGTTTATTACTTGATCCAGTAGCCTTCTTCTTTTAAGTCTAATGCAGAAAACG