Contig 003988:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003F11Sequence534003636 (5)gb|EYU37978.1|9e-65hypothetical protein MIMGU_mgv1a002825mg [Erythranthe guttata]738003988 (2)gb|AFW76484.1|3e-89putative ATPase, V1 complex, subunit B protein [Zea mays] gb|AFW86991.1| putativ
JMFF016A18Sequence555003636 (5)gb|EYU37978.1|4e-72hypothetical protein MIMGU_mgv1a002825mg [Erythranthe guttata]659003988 (2)ref|XP_008377719.1|1e-69PREDICTED: V-type proton ATPase subunit B 2-like [Malus domestica]

Alignment

This contig is upended


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rJMFF003F11+                                                    TCACAGAAGGACAAATAT
                      ____________________________________________________________
consensus                                                       TCACAGAAGGACAAATAT
 
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rJMFF003F11+          ATATTGATAGACAGCTTCATANCCGGCAGATATACCCACCAATCAATGTGCTTCCATCCT
                      ____________________________________________________________
consensus             ATATTGATAGACAGCTTCATANCCGGCAGATATACCCACCAATCAATGTGCTTCCATCCT
 
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rJMFF003F11+          TGTCTCGTTTGATGAAGAGTGCTATTGGAGAGGGTATGACTAGGAGGGATCACTCAGATG
rJMFF016A18+              TCGTTTGATGAAGAGTGCTATTGGAGAGGGTATGACTAGGAGGGATCACTCAGATG
                      ____________________________________________________________
consensus             TGTCTCGTTTGATGAAGAGTGCTATTGGAGAGGGTATGACTAGGAGGGATCACTCAGATG
 
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rJMFF003F11+          TTTCAAACCAGCTATATGCAAATTATGCCATTGGGAAGGATGTCCAAGCAATGAAAGCTG
rJMFF016A18+          TTTCAAACCAGCTATATGCAAATTATGCCATTGGGAAGGATGTCCAAGCAATGAAAGCTG
                      ____________________________________________________________
consensus             TTTCAAACCAGCTATATGCAAATTATGCCATTGGGAAGGATGTCCAAGCAATGAAAGCTG
 
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rJMFF003F11+          TGGTTGGAGAGGAAGCACTTTCTTCTGAGGACCTGCTATACCTAGAGTTTCTAGACAAAT
rJMFF016A18+          TGGTTGGAGAGGAAGCACTTTCTTCTGAGGACCTGCTATACCTAGAGTTTCTAGACAAAT
                      ____________________________________________________________
consensus             TGGTTGGAGAGGAAGCACTTTCTTCTGAGGACCTGCTATACCTAGAGTTTCTAGACAAAT
 
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rJMFF003F11+          TTGAGAGGAAGTTTGTTACCCAAGGAGCATATGACACCCGCAACATCTTTCAGTCACTTG
rJMFF016A18+          TTGAGAGGAAGTTTGTTACCCAAGGAGCATATGACACCCGCAACATCTTTCAGTCACTTG
                      ____________________________________________________________
consensus             TTGAGAGGAAGTTTGTTACCCAAGGAGCATATGACACCCGCAACATCTTTCAGTCACTTG
 
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rJMFF003F11+          ATTTAGCATGGACACTCCTCCGAATCTTCCCTAGGGAGCTTCTACACCGTATCCCAGCAA
rJMFF016A18+          ATTTAGCATGGACACTCCTCCGAATCTTCCCTAGGGAGCTTCTACACCGTATCCCAGCAA
                      ____________________________________________________________
consensus             ATTTAGCATGGACACTCCTCCGAATCTTCCCTAGGGAGCTTCTACACCGTATCCCAGCAA
 
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rJMFF003F11+          AGACCCTGGATCTATTTTACAACAGGGATGCTACTAGTTGATGAGCAAGAGACCAGATTT
rJMFF016A18+          AGACCCTGGATCTATTTTACAACAGGGATGCTACTAGTTGATGAGCAAGAGACCANATTT
                      ____________________________________________________________
consensus             AGACCCTGGATCTATTTTACAACAGGGATGCTACTAGTTGATGAGCAAGAGACCAGATTT
 
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rJMFF003F11+          GTACTCTAGTCCCCCGGTGTGATTTGAGCATCTTGAGATGTTTTATGCACGTTTTCCTTG
rJMFF016A18+          GTACTATAGTCCCCCGGTGTGATTTGAGCATCTTGAGATGTTTTATGCACGTTTTCCTTG
                      ____________________________________________________________
consensus             GTACTCTAGTCCCCCGGTGTGATTTGAGCATCTTGAGATGTTTTATGCACGTTTTCCTTG
 
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rJMFF003F11+          CTAGGTTGCCCATCTCTAGCTCCTCCGAGTTCAATAAAGAGAGCCTCTAAATTGAGTTCT
rJMFF016A18+          CTAGGTTGCCCATCTCTAGCTCCTCCGAGTTCAATAAAGAAAGCCTCTAAATTGAGTTCT
                      ____________________________________________________________
consensus             CTAGGTTGCCCATCTCTAGCTCCTCCGAGTTCAATAAAGAGAGCCTCTAAATTGAGTTCT
 
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rJMFF003F11+          CAAAACCTAGTATCTCCAGCATTCAAGAGACAATTCATATTTTTTTAATGGTTCATGTAT
rJMFF016A18+          CAAAACCTAGTATCTCCAGCATTCAAGAGACAATTCATATTTTTTTAATGGTTCATGTAT
                      ____________________________________________________________
consensus             CAAAACCTAGTATCTCCAGCATTCAAGAGACAATTCATATTTTTTTAATGGTTCATGTAT
 
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rJMFF003F11+          TTTATATTTTTGTTATCCAAAATGTGGCATGACAGGTGGTTGGTTTTGCATTTGTATTAC
rJMFF016A18+          TTTATATTTTTGTTATCCAAAATGTGGCATGACAGGTGGTTGGTTTTGCATTTGTATTAC
                      ____________________________________________________________
consensus             TTTATATTTTTGTTATCCAAAATGTGGCATGACAGGTGGTTGGTTTTGCATTTGTATTAC
 
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rJMFF003F11+          TCCATTTGTCTAAGTTATTTTTGGGGCTTTTAGAAACTAGGAGCTAGTAATAACAAGTAC
rJMFF016A18+          TCCATTTGTCTAAGTTATTTTTGGGGCTTTTAGAANNTAGGAGCTAGTAATAACAAGTAC
                      ____________________________________________________________
consensus             TCCATTTGTCTAAGTTATTTTTGGGGCTTTTAGAAACTAGGAGCTAGTAATAACAAGTAC