Contig 003987:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016H10Sequence613003987 (2)ref|XP_009609389.1|2e-35PREDICTED: GATA transcription factor 28-like [Nicotiana tomentosiformis]
JMFF015O22Sequence498004927 (2)ref|XP_004230570.1|8e-35PREDICTED: GATA transcription factor 24 [Solanum lycopersicum]733003987 (2)ref|XP_009609389.1|4e-56PREDICTED: GATA transcription factor 28-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF015O22-                                                         CATTACTTCAATA
                      ____________________________________________________________
consensus                                                            CATTACTTCAATA
 
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rJMCP016H10+                    TGCCAATTTGCAATCCCCATACAAGATGGATACGTAGACCACAAACATAG
rJMFF015O22-          ACAAATCTATTGCCAATTTGCAATCCCCATACAAGATGGATACGTAGACCACAAACATAG
                      ____________________________________________________________
consensus             ACAAATCTATTGCCAATTTGCAATCCCCATACAAGATGGATACGTAGACCACAAACATAG
 
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rJMCP016H10+          CTAAAGACGCTTTCACTGGGATGTGCATATTTCAAATGTAATGAACAAAtaaCTAAAGCT
rJMFF015O22-          CTAAAGACGCTTTCACTGGGATGTGCATATTTCAAATGTAATGAACAAAATTCTAAAGCT
                      ____________________________________________________________
consensus             CTAAAGACGCTTTCACTGGGATGTGCATATTTCAAATGTAATGAACAAAATTCTAAAGCT
 
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rJMCP016H10+          TTATACTAGAAAACCTAAAACCTAGCCTTCATTCACTCCAAAATGTGCATTTGAAtCTAG
rJMFF015O22-          TTATACTAGAAAACCTAAAACCTAGCCTTCATTCACTCCAAAATGTGCATTTGAAACTAG
                      ____________________________________________________________
consensus             TTATACTAGAAAACCTAAAACCTAGCCTTCATTCACTCCAAAATGTGCATTTGAAACTAG
 
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rJMCP016H10+          TACAGATTTCaATGTACAGCCTGAATCCGAGCTCGATTCCACAGAGAAAGATGAAGTTCA
rJMFF015O22-          TACAGATTTCTATGTACAGCCTGAATCCGAGCTCGATTCCACAGAGAAAGATGAAGTTCA
                      ____________________________________________________________
consensus             TACAGATTTCTATGTACAGCCTGAATCCGAGCTCGATTCCACAGAGAAAGATGAAGTTCA
 
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rJMCP016H10+          AGTCACTGTCTTTCATTATTTTGAGTTCTCACACCTGTACCCTATtaGTATAgttGTAAA
rJMFF015O22-          AGTCACTGTCTTTCATTATTTTGAGTTCTCACACCTGTACCCTATATGTATACAAGTAAA
                      ____________________________________________________________
consensus             AGTCACTGTCTTTCATTATTTTGAGTTCTCACACCTGTACCCTATATGTATACAAGTAAA
 
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rJMCP016H10+          CCGGTGACCAATAtgTTCACTTTTCAGCCGTTGGTGCTGGGTTATCGTAGTTTAACATAt
rJMFF015O22-          CCGGTGACCAATAACTTCACTTTTCAGCCGTTGGTGCTGGGTTATCGTAGTTTAACATAA
                      ____________________________________________________________
consensus             CCGGTGACCAATAACTTCACTTTTCAGCCGTTGGTGCTGGGTTATCGTAGTTTAACATAA
 
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rJMCP016H10+          aGGCATCGCCAGCAATGGTCAaCGCGTGAGAACCGTTTGCTTCACCATTGTTCT      
rJMFF015O22-          TGGCATCGCCAGCAATGGTCATCGCGTGAGAACCGTTTGCTTCACCATTGTTCTGTCCGC
                      ____________________________________________________________
consensus             TGGCATCGCCAGCAATGGTCATCGCGTGAGAACCGTTTGCTTCACCATTGTTCTGTCCGC
 
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rJMFF015O22-          CAATCTTAATGGCGTGATCTTGAACTGCAGTGGCTGGAACTTTAGACAGATCTCTTAAAA
                      ____________________________________________________________
consensus             CAATCTTAATGGCGTGATCTTGAACTGCAGTGGCTGGAACTTTAGACAGATCTCTTAAAA
 
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rJMFF015O22-          TTCCCTTGTTGGCCCACTTGAGTCCACATGCATTGCAAAGTGACCTCGGGCCAGCTGGTC
                      ____________________________________________________________
consensus             TTCCCTTGTTGGCCCACTTGAGTCCACATGCATTGCAAAGTGACCTCGGGCCAGCTGGTC
 
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rJMFF015O22-          CACGGCGCATCATTGGTGTAGCTTTGGAACTAATTCCACAATGTCTACAAAATATTTCCT
                      ____________________________________________________________
consensus             CACGGCGCATCATTGGTGTAGCTTTGGAACTAATTCCACAATGTCTACAAAATATTTCCT
 
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rJMFF015O22-          GATCTTCTTGTCCAGAAACTGAGTTGCAATCTGCAGATGATGAACCTGCTTCATCAGATA
                      ____________________________________________________________
consensus             GATCTTCTTGTCCAGAAACTGAGTTGCAATCTGCAGATGATGAACCTGCTTCATCAGATA
 
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rJMFF015O22-          CCGACTTGGTAGATGTAAATTGACCCTTCTTACGTTGCATCCTCAGTGCAACTTCCTTCC
                      ____________________________________________________________
consensus             CCGACTTGGTAGATGTAAATTGACCCTTCTTACGTTGCATCCTCAGTGCAACTTCCTTCC