Contig 003985:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015H24Sequence586003647 (6)ref|XP_009606191.1|2e-25PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Nicotiana tomentosif640003985 (7)ref|XP_010321097.1|1e-36PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Solanum lycopersicum
JMFF017I22Sequence584003647 (6)ref|XP_009606191.1|1e-25PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Nicotiana tomentosif773003985 (7)ref|XP_010321097.1|6e-63PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Solanum lycopersicum
JMFF028E17Sequence502003647 (6)ref|XP_009606191.1|5e-19PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Nicotiana tomentosif751003985 (7)ref|XP_010321097.1|2e-52PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Solanum lycopersicum
JMFF028I04Sequence714003985 (7)ref|XP_010321097.1|1e-52PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Solanum lycopersicum
JMFN004L02Sequence621003985 (7)ref|XP_010321097.1|4e-58PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Solanum lycopersicum
JMSF019F19Sequence244003647 (6)702003985 (7)ref|XP_010321097.1|2e-55PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Solanum lycopersicum
JMSF023G13Sequence590003647 (6)ref|XP_009606191.1|1e-27PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Nicotiana tomentosif781003985 (7)ref|XP_009758231.1|2e-85PREDICTED: nucleolar complex protein 2 homolog isoform X3 [Nicotiana sylvestris

Alignment

This contig is upended


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rJMSF023G13+               AGTGCNTTCAGTGGCTTAACAGTCTCTCTATTTCTAGTGGAACTTTTGTCCCTGT
                      ____________________________________________________________
consensus                  AGTGCNTTCAGTGGCTTAACAGTCTCTCTATTTCTAGTGGAACTTTTGTCCCTGT
 
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rJMSF023G13+          TGCCTCGTTTGTGTTGGATGTTTTGGAATATAAAATAGTCAAAGAGGGTGGAAAACCTGG
                      ____________________________________________________________
consensus             TGCCTCGTTTGTGTTGGATGTTTTGGAATATAAAATAGTCAAAGAGGGTGGAAAACCTGG
 
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rJMSF023G13+          AAATGCTGTTAACTTCAATTCTGTTTTGAAGTTACCAAAGCATTGCTTGAAGTCACGAAC
rJMFF028E17+                                     GAAGTTACCAAAGCATTGCTTGAAGTCACGACC
rJMSF019F19+                                                         TGAAGTCACGAAC
JMFN004L02-                                              CAAAGCATTGCTTGAAGTCACGAAC
rJMFF017I22+              GCTGTTAACTTCAATTCTGTTTTGAAGTTACCAAAGCATTGCTTGAAGTCACGAAC
                      ____________________________________________________________
consensus             AAATGCTGTTAACTTCAATTCTGTTTTGAAGTTACCAAAGCATTGCTTGAAGTCACGAAC
 
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rJMSF023G13+          CTT-CCAAGAGGAATGCGTTTTCTCAGCAATTGAACAACTATCAGCACATTTTGCTCAGT
rJMFF028E17+          CTTCCCAAGAGGAATGCGTTTTCTCAGCAATTGAACAACTATCAGCACATTTTGCTCAGT
rJMFF028I04+              CCAAGAGGAATGCGTTTTCTCAGCAATTGAACAACTATCAGCACATTTTGCTCAGT
rJMSF019F19+          CTT-CCAAGAGGAATGCGTTTTCTCAGCAATTGAACAACTATCAGCACATTTTGCTCAGT
JMFN004L02-           CTT-CCAAGAGGAATGCGTTTTCTCAGCAATTGAACAACTATCAGCACATTTTGCTCAGT
rJMFF017I22+          CTT-CCAAGAGGAATGCGTTTTCTCAGCAATTGAACAACTATCAGCACATTTTGCTCAGT
                      ____________________________________________________________
consensus             CTT-CCAAGAGGAATGCGTTTTCTCAGCAATTGAACAACTATCAGCACATTTTGCTCAGT
 
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rJMSF023G13+          GGAGCTACCACATTTCCTTTCCCGACTTAGCAACTATCCCAATCATTCGTCTAAAGAAAT
rJMFF028E17+          GGAGCTACCACATTTCCTTTCCCGACTTAGCAACTATCCCAATCATTCGTCTAAAGAAAT
rJMFF028I04+          GGAGCTACCACATTTCCTTTCCCGACTTAGCAACTATCCCAATCATTCGTCTAAAGAAAT
rJMSF019F19+          GGAGCTACCACATTTCCTTTCCCGACTTAGCAACTATCCCAATCATTCGTCTAAAGAAAT
JMFN004L02-           GGAGCTACCACATTTCCTTTCCCGACTTAGCAACTATCCCAATCATTCGTCTAAAGAAAT
rJMFF017I22+          GGAGCTACCACATTTCCTTTCCCGACTTAGCAACTATCCCAATCATTCGTCTAAAGAAAT
rJMFF015H24+                                 GACTTAGCAACTATCCCAATCATTCGTTTAAAGAAAT
                      ____________________________________________________________
consensus             GGAGCTACCACATTTCCTTTCCCGACTTAGCAACTATCCCAATCATTCGTCTAAAGAAAT
 
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rJMSF023G13+          TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCNTTAATCGCTTGATTGACCAGG
rJMFF028E17+          TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCATTAATCGCTTGATTGACCAGG
rJMFF028I04+          TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCATTAATCGCTTGATTGACCAGG
rJMSF019F19+          TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCATTAATCGCTTGATTGACCAGG
JMFN004L02-           TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCATTAATCGCTTGATTGACCAGG
rJMFF017I22+          TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCATTAATCGCTTGATTGACCAGG
rJMFF015H24+          TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCATTAATCGCTTGATTGACCAGG
                      ____________________________________________________________
consensus             TCTGTGAGATGACTAGTGCCGACAGTTCAAAGCGAGTCATTAATCGCTTGATTGACCAGG
 
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rJMSF023G13+          TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
rJMFF028E17+          TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
rJMFF028I04+          TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
rJMSF019F19+          TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
JMFN004L02-           TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
rJMFF017I22+          TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
rJMFF015H24+          TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
                      ____________________________________________________________
consensus             TTGAGCAAAATGTGGGGCTTGTTCAAAAGAAGAGAGATGAGGTGGCTTTTTCACCTAATG
 
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rJMSF023G13+          ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
rJMFF028E17+          ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
rJMFF028I04+          ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
rJMSF019F19+          ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
JMFN004L02-           ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
rJMFF017I22+          ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
rJMFF015H24+          ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
                      ____________________________________________________________
consensus             ATCATCAATCCGTTGAATTATTTCTTCAGCTTGAGAAGTCAAGTTTGAAAGCTCCATTCA
 
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rJMSF023G13+          CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
rJMFF028E17+          CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
rJMFF028I04+          CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
rJMSF019F19+          CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
JMFN004L02-           CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
rJMFF017I22+          CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
rJMFF015H24+          CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
                      ____________________________________________________________
consensus             CTCAATACTACAAAAGTGTTCATGATAATGCTGCTCTAAGGACTTTGCGGAAGAATGAAA
 
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rJMSF023G13+          AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
rJMFF028E17+          AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
rJMFF028I04+          AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
rJMSF019F19+          AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
JMFN004L02-           AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
rJMFF017I22+          AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
rJMFF015H24+          AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
                      ____________________________________________________________
consensus             AGATGAGCTTGCCAACACCAAAGAAACCAAAGCGGAAAAGAGGGCAGCTCCGTGATGGCG
 
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rJMSF023G13+          TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
rJMFF028E17+          TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
rJMFF028I04+          TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
rJMSF019F19+          TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
JMFN004L02-           TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
rJMFF017I22+          TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
rJMFF015H24+          TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
                      ____________________________________________________________
consensus             TAGATGCTGATAAAGAAAGACACAACCCCAAAAATGATGATGCTATGGTTAACTTAAAGG
 
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rJMSF023G13+          GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
rJMFF028E17+          GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
rJMFF028I04+          GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
rJMSF019F19+          GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
JMFN004L02-           GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
rJMFF017I22+          GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
rJMFF015H24+          GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
                      ____________________________________________________________
consensus             GGAAGAAACAAAGAACTGTCAAAGCATAATTGTAACATCATTCTTCTTCACTACAAAATT
 
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rJMSF023G13+          TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGC   
rJMFF028E17+          TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGCACT
rJMFF028I04+          TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGCACT
rJMSF019F19+          TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGCACT
JMFN004L02-           TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGC   
rJMFF017I22+          TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGCACT
rJMFF015H24+          TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGCACT
                      ____________________________________________________________
consensus             TTGGGCTTTTAATTCTTAGCTTTGGATTGTAAGTGATGATTAGTCAAGGAAAGGGGCACT
 
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rJMFF028E17+          GTGCCCTACATGCTCTAACTACCTCAGACTTTATATTTCCCAGTTCATAGTAGAAGGATA
rJMFF028I04+          GTGCCCTACATGCTCTAACTACCTCAGACTTTATATTTCCCAGTTCATAGTAGAAGGATA
rJMSF019F19+          GTGCCCTACATGCTCTAACTACCTCAGACTTTATATTTCCCAGTTCATAGTAGAAGGATA
rJMFF017I22+          GTGCCCTACATGCTCTAACTACCTCAGACTTTATATTTCCCAGTTCATAGTAGAAGGATA
rJMFF015H24+          GTGCCCTACATGCTCTAACTACCTCAGACTTTATATTTCCCAGTTCATAGTAGAAGGATA
                      ____________________________________________________________
consensus             GTGCCCTACATGCTCTAACTACCTCAGACTTTATATTTCCCAGTTCATAGTAGAAGGATA
 
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rJMFF028E17+          TGATCAAGACAAACAATTGGTTACTCAATTTTTGGCAACATTTATGATACGAAAAAAT  
rJMFF028I04+          TGATCAAGACAAACAATTGGTTACTCAATTTTTGGCAACATTTATGATACGAAAAAAT  
rJMSF019F19+          TGATCAAGACAAACAATTGGTTACTCAATT                              
rJMFF017I22+          TGATCAAGACAAACAATTGGTTACTCAATTTTTGGCAACATTTATGATACGAAAAAAT  
rJMFF015H24+          TGATCAAGACAAACAATTGGTTACTCAATTTTTGGCAACATTTATGATACGAAAAAATTC
                      ____________________________________________________________
consensus             TGATCAAGACAAACAATTGGTTACTCAATTTTTGGCAACATTTATGATACGAAAAAATTC