Contig 003982:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014D24Sequence502009416 (3)ref|XP_011085688.1|8e-71PREDICTED: ras GTPase-activating protein-binding protein 2-like [Sesamum indicu789003982 (3)ref|XP_009764521.1|1e-35PREDICTED: ras GTPase-activating protein-binding protein 2 [Nicotiana sylvestri
JMSF012B19Sequence231009416 (3)ref|XP_007139477.1|8e-10hypothetical protein PHAVU_008G032800g [Phaseolus vulgaris] gb|ESW11471.1| hypot775003982 (3)ref|XP_006338360.1|1e-35PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X2 [Sol
JMSF031F17Sequence679009416 (3)ref|XP_009764521.1|9e-77PREDICTED: ras GTPase-activating protein-binding protein 2 [Nicotiana sylvestri738003982 (3)ref|XP_006338360.1|5e-35PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X2 [Sol

Alignment

This contig is upended


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rJMSF012B19+                                                            GAGGATGAAA
                      ____________________________________________________________
consensus                                                               GAGGATGAAA
 
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rJMSF012B19+          ACTGAAAAGCAGTCAGCTAGTATGGTAGCACAAGTTCCAGTACCTGAAGCACCAGCTCCA
rJMFF014D24+                                                            ACCAGCTCCA
                      ____________________________________________________________
consensus             ACTGAAAAGCAGTCAGCTAGTATGGTAGCACAAGTTCCAGTACCTGAAGCACCAGCTCCA
 
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rJMSF012B19+          ATTGCCCCCAGCACTGCTATTGATGAAAGCAAGAATGCTCAAGAAGAAGCTGAGGGTCAT
rJMSF031F17+                         GCTATTGATGAAAGCAAGAATGCTCAAGAAGAAGCTGAGGGTCAT
rJMFF014D24+          ATTGCCCCCAGCACTGCTATTGATGAAAGCAAGAATGCTCAAGAAGAAGCTGAGGGTCAT
                      ____________________________________________________________
consensus             ATTGCCCCCAGCACTGCTATTGATGAAAGCAAGAATGCTCAAGAAGAAGCTGAGGGTCAT
 
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rJMSF012B19+          TCCATTTATGTCCGAAATTTGCCTTTCAATATTACAGTAGCTGAATTAGAGGCTGTATTT
rJMSF031F17+          TCCATTTATGTCCGAAATTTGCCTTTCAATATTACAGTAGCTGAATTAGAGGCTGTATTT
rJMFF014D24+          TCCATTTATGTCCGAAATTTGCCTTTCAATATTACAGTAGCTGAATTAGAGGCTGTATTT
                      ____________________________________________________________
consensus             TCCATTTATGTCCGAAATTTGCCTTTCAATATTACAGTAGCTGAATTAGAGGCTGTATTT
 
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rJMSF012B19+          AAAAAATATGGACCTATCAAGCACGGAGGTATCCAAGTCAGAAGTAACAGGCAACAAGGA
rJMSF031F17+          AAAAAATATGGACCTATCAAGCACGGAGGTATCCAAGTCAGAAGTAACAGGCAACAAGGA
rJMFF014D24+          AAAAAATATGGACCTATCAAGCACGGAGGTATCCAAGTCAGAAGTAACAGGCAACAAGGA
                      ____________________________________________________________
consensus             AAAAAATATGGACCTATCAAGCACGGAGGTATCCAAGTCAGAAGTAACAGGCAACAAGGA
 
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rJMSF012B19+          TTCTGTTTTGGCTTTGTTGAATTTCATGGTTTGAACTCAATGAACAATGCTATACAGGAT
rJMSF031F17+          TTCTGTTTTGGCTTTGTTGAATTTCATGGTTTGAACTCAATGAACAATGCTATACAGGAT
rJMFF014D24+          TTCTGTTTTGGCTTTGTTGAATTTCATGGTTTGAACTCAATGAACAATGCTATACAGGAT
                      ____________________________________________________________
consensus             TTCTGTTTTGGCTTTGTTGAATTTCATGGTTTGAACTCAATGAACAATGCTATACAGGAT
 
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rJMSF012B19+          TCACCCATTATGATTGGGGATCGTCAAGCTGTAGTTGAGATAAAAAGAACTACAACTCGA
rJMSF031F17+          TCACCCATTATGATTGGGGATCGTCAAGCTGTAGTTGAGATAAAAAGAACTACAACTCGA
rJMFF014D24+          TCACCCATTATGATTGGGGATCGTCAAGCTGTAGTTGAGATAAAAAGAACTACAACTCGA
                      ____________________________________________________________
consensus             TCACCCATTATGATTGGGGATCGTCAAGCTGTAGTTGAGATAAAAAGAACTACAACTCGA
 
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rJMSF012B19+          GTTGGGATGGGGAGAGGTCGGTTTGGTTCTGGTAGAGGGTTTCGAAATGATAGATTGAGG
rJMSF031F17+          GTTGGGATGGGGAGAGGTCGGTTTGGTTCTGGTAGAGGGTTTCGAAATGATAGATTGAGG
rJMFF014D24+          GTTGGGATGGGGAGAGGTCGGTTTGGTTCTGGTAGAGGGTTTCGAAATGATAGATTGAGG
                      ____________________________________________________________
consensus             GTTGGGATGGGGAGAGGTCGGTTTGGTTCTGGTAGAGGGTTTCGAAATGATAGATTGAGG
 
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rJMSF012B19+          GAGCATGGGGATTTCAGAGGAGGAGGTCGCAGCAGCTACGGGAGAGGTGATTTTGGAGAC
rJMSF031F17+          GAGCATGGGGATTTCAGAGGAGGAGGTCGCAGCAGCTACGGGAGAGGTGATTTTGGAGAC
rJMFF014D24+          GAGCATGGGGATTTCAGAGGAGGAGGTCGCAGCAGCTACGGGAGAGGTGATTTTGGAGAC
                      ____________________________________________________________
consensus             GAGCATGGGGATTTCAGAGGAGGAGGTCGCAGCAGCTACGGGAGAGGTGATTTTGGAGAC
 
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rJMSF012B19+          GGTGAATTTTCAGGGCATGGTAGGGGCCAAGGTGGGCGAGGGAGGGGAGGAGGACGAAGA
rJMSF031F17+          GGTGAATTTTCAGGGCATGGTAGGGGCCAAGGTGGGCGAGGGAGGGGAGGAGGACGAAGA
rJMFF014D24+          GGTGAATTTTCAGGGCATGGTAGGGGCCAAGGTGGGCGAGGGAGGGGAGGAGGACGAAGA
                      ____________________________________________________________
consensus             GGTGAATTTTCAGGGCATGGTAGGGGCCAAGGTGGGCGAGGGAGGGGAGGAGGACGAAGA
 
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rJMSF012B19+          GGTGGTTGGAGCCGAAATGCAGCAGCAGCAGCAGCTTCATCACCACACTAATCCAGCCAA
rJMSF031F17+          GGTGGTTGGAGCCGAAATGCAGCAGCAGCAGCAGCTTCATCACCACACTAATCCAGCCAA
rJMFF014D24+          GGTGGTTGGAGCCGAAATGCAGCAGCAGCAGCAGCTTCATCACCACACTAATCCAGCCAA
                      ____________________________________________________________
consensus             GGTGGTTGGAGCCGAAATGCAGCAGCAGCAGCAGCTTCATCACCACACTAATCCAGCCAA
 
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rJMSF012B19+          AATATTTTGGCCCAATTTTGACACTGTAGTTTTCACTTGCCAGTGCGGTGGGCAACCAAA
rJMSF031F17+          AATATTTTGGCCCAATTTTGACACTGTAGTTTTCACTTGCCAGTGCGGTGGGCAACCAAA
rJMFF014D24+          AATATTTTGGCCCAATTTTGACACTGTAGTTTTCACTTGCCAGTGCGGTGGGCAACCAAA
                      ____________________________________________________________
consensus             AATATTTTGGCCCAATTTTGACACTGTAGTTTTCACTTGCCAGTGCGGTGGGCAACCAAA
 
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rJMSF012B19+          ACAAAAATCACGATTAACCTAATTCTTGTACGAGATAGAAGAAATGGTATCATCATTTAT
rJMSF031F17+          ACAAAAATCACGATTAACCTAATTCTTGTACGAGATAGAAGAAATGGTATCATCATTTAT
rJMFF014D24+          ACAAAAATCACGATTAACCTAATTCTTGTACGAGATAGAAGAAATGGTATCATCATTTAT
                      ____________________________________________________________
consensus             ACAAAAATCACGATTAACCTAATTCTTGTACGAGATAGAAGAAATGGTATCATCATTTAT
 
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rJMSF012B19+          CGTATATGTAAACTAAAGACCCATGTTCTGTAATTCCACAAATGT               
rJMSF031F17+          CGTATATGTAAACTAAAGA-CCATGTTCTGTAATTCCACAAATGTTAGCCAGGGGGAACA
rJMFF014D24+          CGTATATGTAAACTAAAGA-CCATGTTCTGTAATTCCACAAATGTTAGCCAGGGGGAACA
                      ____________________________________________________________
consensus             CGTATATGTAAACTAAAGA-CCATGTTCTGTAATTCCACAAATGTTAGCCAGGGGGAACA
 
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rJMSF031F17+          GCACAAGCAGTTATGTTAGAATACTTACCTCAAC                          
rJMFF014D24+          GCACAAGCAGTTATGTTAGAATACTTACCTCAACAGTCTTATTATCACAATATATACTAA
                      ____________________________________________________________
consensus             GCACAAGCAGTTATGTTAGAATACTTACCTCAACAGTCTTATTATCACAATATATACTAA