| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014D02 | Sequence | 535 | 003981 (6) | ref|XP_006384760.1| | 1e-23 | harpin-induced family protein [Populus trichocarpa] gb|ERP62557.1| harpin-induce | 700 | 003981 (6) | ref|NP_001275943.1| | 3e-61 | uncharacterized protein LOC102589097 [Solanum tuberosum] ref|XP_006364492.1| PRE |
| JMFF019H20 | Sequence | 563 | 003981 (6) | ref|XP_006384760.1| | 2e-30 | harpin-induced family protein [Populus trichocarpa] gb|ERP62557.1| harpin-induce | 733 | 003981 (6) | ref|XP_009779546.1| | 1e-70 | PREDICTED: protein YLS9 [Nicotiana sylvestris] |
| JMFF023E18 | Sequence | 487 | 003981 (6) | ref|XP_006384760.1| | 3e-15 | harpin-induced family protein [Populus trichocarpa] gb|ERP62557.1| harpin-induce | 742 | 003981 (6) | ref|XP_009779546.1| | 3e-67 | PREDICTED: protein YLS9 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFF023E18- ACTCGCACTCA
JMFF014D02- ACTCGCACTCA
JMFF019H20- ACTCGCACTCA
____________________________________________________________
consensus ACTCGCACTCA
. : . : . : . : . : . :
JMFF023E18- CGTTCTTTGATTACTTTCATCTTTTGCAACCGCATTCATATATCTGGAGAATTATTCTTC
JMFF014D02- CGTTCTTTGATTACTTTCATCTTTTGCAACCGCATTCATATATCTGGAGAATTATTCTTC
JMFF019H20- CGTTCTTTGATTACTTTCATCTTTTGCAACCGCATTCATATATCTGGAGAATTATTCTTC
____________________________________________________________
consensus CGTTCTTTGATTACTTTCATCTTTTGCAACCGCATTCATATATCTGGAGAATTATTCTTC
. : . : . : . : . : . :
JMFF023E18- CTACCTGGTGTCAACAATGGCTGATCGGGTACACGCTAATAACGACTCGCCGTCATCGGA
JMFF014D02- CTACCTGGTGTCAACAATGGCTGATCGGGTACACGCTAATAACGACTCGCCGTCATCGGA
JMFF019H20- CTACCTGGTGTCAACAATGGCTGATCGGGTACACGCTAATAACGACTCGCCGTCATCGGA
____________________________________________________________
consensus CTACCTGGTGTCAACAATGGCTGATCGGGTACACGCTAATAACGACTCGCCGTCATCGGA
. : . : . : . : . : . :
JMFF023E18- GAACTCTGGCCAAGTAGCAGAGCGGAATGCGCAGCAGCCGGGAAAACCGCAACTGCCAGC
JMFF014D02- GAACTCTGGCCAAGTAGCAGAGCGGAATGCGCAGCAGCCGGGAAAACCGCAACTGCCAGC
JMFF019H20- GAACTCTGGCCAAGTAGCAGAGCGGAATGCGCAGCAGCCGGGAAAACCGCAACTGCCAGC
rJMFF023E18+ AAGTAGCAGAGCGGAATGCGCAGCAGCCGGGAAAACCGCAACTGCCAGC
rJMFF019H20+ CCAGC
____________________________________________________________
consensus GAACTCTGGCCAAGTAGCAGAGCGGAATGCGCAGCAGCCGGGAAAACCGCAACTGCCAGC
. : . : . : . : . : . :
JMFF023E18- TTCTGCAAAGCCGGTTCCGCCGCCGGGGACTTACGTCATCCAGGTCCCGAAGGACCAGAT
JMFF014D02- TTCTGCAAAGCCGGTTCCGCCGCCGGGGACTTACGTCATCCAGGTCCCGAAGGACCAGAT
JMFF019H20- TTCTGCAAAGCCGGTTCCGCCGCCGGGGACTTACGTCATCCAGGTCCCGAAGGACCAGAT
rJMFF023E18+ TTCTGCAAAGCCGGTTCCGCCGCCGGGGACTTACGTCATCCAGGTCCCGAAGGACCAGAT
rJMFF019H20+ TTNTGCAAAGCCGGTTCCGCCGCCGGGGACTTACGTCATCCAGGTCCCGAAGGACCAGAT
____________________________________________________________
consensus TTCTGCAAAGCCGGTTCCGCCGCCGGGGACTTACGTCATCCAGGTCCCGAAGGACCAGAT
. : . : . : . : . : . :
JMFF023E18- ATACCGCTACCCT-CCGCCGGAGAACTCCCGCCGCTTGAAGTCCTTCAGCCGCCGCAAGA
JMFF014D02- ATACCGCTACCCT-CCGCCGGAGAACTCCCGCCGCTTGAAGTCCTTCAGCCGCCGCAAGA
JMFF019H20- ATACCGCTACCCT-CCGCCGGAGAACTCCCGCCGCTTGAAGTCCTTCAGCCGCCGCAAGA
rJMFF023E18+ ATACCGCTACCCTCCCGCCGGAGAACTCCCGCCGCTTGAAGTCCTTCAGCCGCCGCAAGA
rJMFF019H20+ ATACCGCTACCCTCCCGCCGGAGAACTCCCGCCGCTTGAAGTCCTTCAGCCGCCGCAAGA
____________________________________________________________
consensus ATACCGCTACCCT-CCGCCGGAGAACTCCCGCCGCTTGAAGTCCTTCAGCCGCCGCAAGA
. : . : . : . : . : . :
JMFF023E18- GTCGCCGCGGGTGCTGCTGCAGGTGCTTCTGCTACACTCTGTGTCTCCTCGTGGTCCTCA
JMFF014D02- GTCGCCGCGGGTGCTGCTGCAGGTGCTTCTGCTACACTCTGTGTCTCCTCGTGGTCCTCA
JMFF019H20- GTCGCCGCGGGTGCTGCTGCAGGTGCTTCTGCTACACTCTGTGTCTCCTCGTGGTCCTCA
rJMFF023E18+ GTCGCCGCGGGTGCTGCTGCAGGTGCTTCTGCTACACTCTGTGTCTCCTCGTGGTCCTCA
rJMFF019H20+ GTCGCCGCGGGTGCTGCTGCAGGTGCTTCTGCTACACTCTGTGTCTCCTCGTGGTCCTCA
____________________________________________________________
consensus GTCGCCGCGGGTGCTGCTGCAGGTGCTTCTGCTACACTCTGTGTCTCCTCGTGGTCCTCA
. : . : . : . : . : . :
JMFF023E18- TTGTCGCCCTCGCCGTCGCCGCCGGCGTTCTCTACCTTGTTTTCCGCCCTGAATCGCCGA
JMFF014D02- TTGTCGCCCTCGCCGTCGCCGCCGGCGTTCTCTACCTTGTTTTCCGCCCTGAATCGCCGA
JMFF019H20- TTGTCGCCCTCGCCGTCGCCGCCGGCGTTCTCTACCTTGTTTTCCGCCCTGAATCGCCGA
rJMFF023E18+ TTGTCGCCCTCGCCGTCGCCGCCGGCGTTCTCTACCTTGTTTTCCGCCCTGAATCGCCGA
rJMFF019H20+ TTGTCGCCCTCGCCGTCGCCGCCGGCGTTCTCTACCTTGTTTTCCGCCCTGAATCGCCGA
____________________________________________________________
consensus TTGTCGCCCTCGCCGTCGCCGCCGGCGTTCTCTACCTTGTTTTCCGCCCTGAATCGCCGA
. : . : . : . : . : . :
JMFF023E18- ATTACACCGTGACCGACGTCGCAATCAAGGGGCTGAACCTGACGTCACGCTCCGCGG
JMFF014D02- ATTACACCGTGACCGACGTCGCAATCAAGGGGCTGAACCTGACGTCACGCTCCGCGGTTT
JMFF019H20- ATTACACCGTGACCGACGTCGCAATCAAGGGGCTGAACCTGACGTCACGCTCCGCGGTTT
rJMFF023E18+ ATTACACCGTGACCGACGTCGCAATCAAGGGGCTGAACCTGACGTCACGCTCCGCGGTTT
rJMFF019H20+ ATTACACCGTGACCGACGTCGCAATCAAGGGGCTGAACCTGACGTCACGCTCCGCGGTTT
rJMFF014D02+ TCGCAATCAAGGGGCTGAACCTGACGTCACGCTCCGCGGTTT
____________________________________________________________
consensus ATTACACCGTGACCGACGTCGCAATCAAGGGGCTGAACCTGACGTCACGCTCCGCGGTTT
. : . : . : . : . : . :
JMFF014D02- CGCCCGAGTTTGACGTCATCGTCCAAGCGGAGAATCCTAACGACA
JMFF019H20- CGCCCGAGTTTGACGTCATCGTCCAAGCGGAGAATCCTAACGACAAGATCGGGGTTTATT
rJMFF023E18+ CGCCCGAGTTTGACGTCATCGTCCAAGCGGAGAATCCTAACGACAAGATCGGGGTTTATT
rJMFF019H20+ CGCCCGAGTTTGACGTCATCGTCCAAGCGGAGAATCCTAACGACAAGATCGGGGTTTATT
rJMFF014D02+ CGCCCGAGTTTGACGTCATCGTCCAAGCGGAGAATCCTAACGACAAGATCGGGGTTTATT
____________________________________________________________
consensus CGCCCGAGTTTGACGTCATCGTCCAAGCGGAGAATCCTAACGACAAGATCGGGGTTTATT
. : . : . : . : . : . :
JMFF019H20- ACCGGAAAGGAAG
rJMFF023E18+ ACCGGAAAGGAAGCTCCGTTAGGGTTTCTTATTCCGGCATTGAACTCAGTCACGGTGAAT
rJMFF019H20+ ACCGGAAAGGAAGCTCCGTTAGGGTTTCTTATTCCGGCATTGAACTCAGTCACGGTGAAT
rJMFF014D02+ ACCGGAAAGGAAGCTCCGTTAGGGTTTCTTATTCCGGCATTGAACTCAGTCACGGTGAAT
____________________________________________________________
consensus ACCGGAAAGGAAGCTCCGTTAGGGTTTCTTATTCCGGCATTGAACTCAGTCACGGTGAAT
. : . : . : . : . : . :
rJMFF023E18+ TGCCGGTGTTTTTTCAGCCGTCAAATAACGTGACGGATTTCCACACGGCGCTGAAGGGAT
rJMFF019H20+ TGCCGGTGTTTTTTCAGCCGTCAAATAACGTGACGGATTTCCACACGGCGCTGAAGGGAT
rJMFF014D02+ TGCCGGTGTTTTTTCAGCCGTCAAATAACGTGACGGATTTCCACACGGCGCTGAAGGGAT
____________________________________________________________
consensus TGCCGGTGTTTTTTCAGCCGTCAAATAACGTGACGGATTTCCACACGGCGCTGAAGGGAT
. : . : . : . : . : . :
rJMFF023E18+ CCGGCGTGTTGCTGGGTAACACCGTTAGATCGTCACTGGTTCGTCAGCAGAGACAACGGA
rJMFF019H20+ CCGGCGTGTTGCTGGGTAACACCGTCAGATCGTCACTGGTTCGTCAGCAGAGACAACGGA
rJMFF014D02+ CCGGCGTGTTGCTGGGTAACACCGTTAGATCGTCACTGGTTCGTCAGCAGAGACAACGGA
____________________________________________________________
consensus CCGGCGTGTTGCTGGGTAACACCGTTAGATCGTCACTGGTTCGTCAGCAGAGACAACGGA
. : . : . : . : . : . :
rJMFF023E18+ AAGTAACGTTTAAGTTGGACGTAGAAGCGCCGGTCAAAATTAAGGTCGGGGCAGTGAAGA
rJMFF019H20+ AAGTAACGTTTAAGTTGGACGTAGAAGCGCCGGTCAAAATTAAGGTCGGGGCAGTGAAGA
rJMFF014D02+ AAGTAACGTTTAAGTTGGACGTAGAAGCGCCGGTCAAAATTAAGGTCGGGGCAGTGAAGA
____________________________________________________________
consensus AAGTAACGTTTAAGTTGGACGTAGAAGCGCCGGTCAAAATTAAGGTCGGGGCAGTGAAGA
. : . : . : . : . : . :
rJMFF023E18+ CGTGGGAAATCACTGTCAAGGTTAAATGTGACGTCACCGTGGATGCTTTGAATGAGAAAT
rJMFF019H20+ CGTGGGAAATCACTGTCAAGGTTAAATGTGACGTCACCGTGGATGCTTTGAATGAGAAAT
rJMFF014D02+ CGTGGGAAATCACTGTCAAGGTTAAATGTGACGTCACCGTGGATGCTTTGAATGAGAAAT
____________________________________________________________
consensus CGTGGGAAATCACTGTCAAGGTTAAATGTGACGTCACCGTGGATGCTTTGAATGAGAAAT
. : . : . : . : . : . :
rJMFF023E18+ CCAACGTCGTTTCAAAGGATTGTAATTACAGTG
rJMFF019H20+ CCAACGTCGTTTCAAAGGATTGTAATTACAGTGTGAAATTGTGGTAGAAAATTTGTGTTC
rJMFF014D02+ CCAACGTCGTTTCAAAGGATTGTAATTACAGTGTGAAAT--TGGTAGAAAATTTGTGTTC
____________________________________________________________
consensus CCAACGTCGTTTCAAAGGATTGTAATTACAGTGTGAAATTGTGGTAGAAAATTTGTGTTC
. : . : . : . : . : . :
rJMFF019H20+ TATTAAAT
rJMFF014D02+ TATTAAATTCATTCTTTTTTATGATTTTAGAATTTTGAACACCACATACTTTATAATGAG
____________________________________________________________
consensus TATTAAATTCATTCTTTTTTATGATTTTAGAATTTTGAACACCACATACTTTATAATGAG
. : . : . : . : . : . :
rJMFF014D02+ AAAAATGATATTTGGACTATACTATGTTTAATTGTTGTAAAAATTGACCTCCAACTAGGT
____________________________________________________________
consensus AAAAATGATATTTGGACTATACTATGTTTAATTGTTGTAAAAATTGACCTCCAACTAGGT
. : . : . : . : . : . :
rJMFF014D02+ GTTAGGCTGAAGCAATTTCAATCTTAGGCGACTTTTAGTTAGATGGTTGATTAGGCGCCG
____________________________________________________________
consensus GTTAGGCTGAAGCAATTTCAATCTTAGGCGACTTTTAGTTAGATGGTTGATTAGGCGCCG
. : . : . : . : . : . :
rJMFF014D02+ AGTTTGGAGCCTAACTAGACCGAGTTGGTGCCAAACTCTGCGAAGTGGTATTTTTTACTG
____________________________________________________________
consensus AGTTTGGAGCCTAACTAGACCGAGTTGGTGCCAAACTCTGCGAAGTGGTATTTTTTACTG