| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001K11 | Sequence | 523 | 003979 (14) | gb|AFK39830.1| | 1e-69 | unknown [Lotus japonicus] | 594 | 003979 (14) | gb|AFK39830.1| | 3e-69 | unknown [Lotus japonicus] |
| JMFF013G02 | Sequence | 599 | 003979 (14) | gb|AFK39830.1| | 4e-69 | unknown [Lotus japonicus] | 642 | 003979 (14) | gb|AFK39830.1| | 6e-69 | unknown [Lotus japonicus] |
| JMFF018P20 | Sequence | 562 | 003979 (14) | gb|AFK39830.1| | 2e-69 | unknown [Lotus japonicus] | 650 | 003979 (14) | gb|AFK39830.1| | 2e-69 | unknown [Lotus japonicus] |
| JMFF022F08 | Sequence | 473 | 003979 (14) | ref|XP_002279938.1| | 1e-68 | PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera] ref|XP_ | 716 | 003979 (14) | gb|AFK39830.1| | 5e-68 | unknown [Lotus japonicus] |
| JMFF033E12 | Sequence | 338 | 003979 (14) | ref|XP_004229971.1| | 1e-37 | PREDICTED: eukaryotic translation initiation factor 1A-like [Solanum lycopersic | |||||
| JMFN001B05 | Sequence | 516 | 003979 (14) | gb|AFK39830.1| | 1e-69 | unknown [Lotus japonicus] | |||||
| JMFN010F03 | Sequence | 624 | 003979 (14) | gb|AFK39830.1| | 5e-69 | unknown [Lotus japonicus] | |||||
| JMFN041L10 | Sequence | 628 | 003979 (14) | gb|AFK39830.1| | 5e-72 | unknown [Lotus japonicus] | |||||
| JMSF029J10 | Sequence | 619 | 003979 (14) | gb|AFK39830.1| | 5e-69 | unknown [Lotus japonicus] | 564 | 003979 (14) | gb|AFK39830.1| | 2e-69 | unknown [Lotus japonicus] |
This contig is upended
. : . : . : . : . : . :
JMFN041L10- ACTAGTCTTGAGXXXXXXXXXXXXXXXXX
____________________________________________________________
consensus ACTAGTCTTGAGNNNNNNNNNNNNNNNNN
. : . : . : . : . : . :
JMFN041L10- XXXXXAAAAAGGTAACTCAGTTTTATTCCATCCATTTTATCGAAAGCTTAACTTCATACT
____________________________________________________________
consensus NNNNNAAAAAGGTAACTCAGTTTTATTCCATCCATTTTATCGAAAGCTTAACTTCATACT
. : . : . : . : . : . :
JMFN041L10- TGAAATTCAATGCACAAGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
rJMFF018P20- ATGCACAAGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
JMFF013G02+ G
rJMFF001K11- AATTAAATATCCCAG
rJMSF029J10- TATCCCAG
JMFF001K11+ CCAG
rJMFF013G02- AGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
____________________________________________________________
consensus TGAAATTCAATGCACAAGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
. : . : . : . : . : . :
JMFN041L10- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMFF018P20- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
JMFF013G02+ TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMFF001K11- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMSF029J10- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
JMFF018P20+ AACTCAAATACAAATAAAAATACT
JMFN001B05+ ATAAAAATACT
JMFF001K11+ TTNTANGTATATNGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
JMFN010F03+ TGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMFF013G02- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
____________________________________________________________
consensus TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
. : . : . : . : . : . :
JMFN041L10- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF018P20- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFF013G02+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF001K11- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMSF029J10- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFF018P20+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFN001B05+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF022F08- TTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFF001K11+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFN010F03+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMSF029J10+ TTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF013G02- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
____________________________________________________________
consensus TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
. : . : . : . : . : . :
JMFN041L10- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF018P20- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF013G02+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF001K11- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMSF029J10- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF018P20+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFN001B05+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF022F08+ ATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF022F08- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF001K11+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFN010F03+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMSF029J10+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF013G02- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
____________________________________________________________
consensus CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
. : . : . : . : . : . :
JMFN041L10- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF018P20- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF013G02+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF001K11- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMSF029J10- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF018P20+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFN001B05+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF022F08+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF022F08- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF033E12+ TTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF001K11+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFN010F03+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMSF029J10+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF013G02- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
____________________________________________________________
consensus TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
. : . : . : . : . : . :
JMFN041L10- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMFF018P20- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF013G02+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMFF001K11- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMSF029J10- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF018P20+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFN001B05+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF022F08+ GAATTACATCGGCCTTATCATC-CTGATAGTCGCGGAGGCCGACGAGGATGATGTCGCCG
rJMFF022F08- GAATTACATCGGCCTTATCATC-CTGATAGTCGCGGAGGCCGACGAGGATGATGTCGCCG
JMFF033E12+ GAATTACATCGGCCTTATCATCTATGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF001K11+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFN010F03+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMSF029J10+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMFF013G02- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
____________________________________________________________
consensus GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
. : . : . : . : . : . :
JMFN041L10- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF018P20- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF013G02+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF001K11- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMSF029J10- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF018P20+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFN001B05+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF022F08+ GCGGCGATCCAGACCTTCTCGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF022F08- GCGGCGATCCAGACCTTCTCGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF033E12+ GCGGCGATCCAGNCCTTCTTGNGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF001K11+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFN010F03+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMSF029J10+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF013G02- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
____________________________________________________________
consensus GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
. : . : . : . : . : . :
JMFN041L10- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF018P20- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF013G02+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF001K11- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMSF029J10- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF018P20+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFN001B05+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF022F08+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF022F08- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF033E12+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF001K11+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFN010F03+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMSF029J10+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF013G02- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
____________________________________________________________
consensus TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
. : . : . : . : . : . :
JMFN041L10- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF018P20- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF013G02+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF001K11- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMSF029J10- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF018P20+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFN001B05+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF022F08+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF022F08- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF033E12+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTNTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF001K11+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFN010F03+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMSF029J10+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF013G02- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
____________________________________________________________
consensus TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
. : . : . : . : . : . :
rJMFF018P20- TTCCTATTCTTACCTCCCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFF013G02+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
rJMFF001K11- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
rJMSF029J10- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFF018P20+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFN001B05+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFF022F08+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATG
rJMFF022F08- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATG
JMFF033E12+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGC
JMFF001K11+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGC
JMFN010F03+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATG
JMSF029J10+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
rJMFF013G02- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
____________________________________________________________
consensus TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
. : . : . : . : . : . :
rJMFF018P20- CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
JMFF013G02+ CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
rJMFF001K11- CTAACCCAAACAGCTCT
rJMSF029J10- CTAACCCAAACAGCTCT
JMFF018P20+ CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
JMFN001B05+ CTAACCCAAACAGCTCTGGTTTTTGTT
JMSF029J10+ CTAACCCAAACAGCTCT
rJMFF013G02- CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
____________________________________________________________
consensus CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT